Strain Fitness in Variovorax sp. SCN45 around GFF7090

Experiment: Community=Locust bean gum; Passage=1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=1
11,777	+		GFF7088	0.87	-0.2
11,777	+		GFF7088	0.87	-1.0
11,778	-		GFF7088	0.87	-1.7
11,778	-		GFF7088	0.87	+0.6
11,885	+				+1.4
11,885	+				+0.3
11,885	+				+0.6
11,885	+				-0.0
11,886	-				+0.1
11,886	-				-0.5
11,886	-				-2.0
11,886	-				-0.2
11,886	-				+0.9
11,886	-				-0.1
12,207	+		GFF7089	0.31	-0.8
12,321	+		GFF7089	0.46	-0.1
12,321	+		GFF7089	0.46	+0.0
12,321	+		GFF7089	0.46	+0.6
12,321	+		GFF7089	0.46	-0.5
12,321	+		GFF7089	0.46	-0.3
12,321	+		GFF7089	0.46	-0.7
12,322	-		GFF7089	0.46	-0.4
12,322	-		GFF7089	0.46	-0.5
12,322	-		GFF7089	0.46	-0.6
12,322	-		GFF7089	0.46	+1.2
12,322	-		GFF7089	0.46	+0.3
12,426	+		GFF7089	0.59	-1.2
12,426	+		GFF7089	0.59	+0.2
12,426	+		GFF7089	0.59	-0.1
12,427	-		GFF7089	0.59	+0.0
12,474	+		GFF7089	0.65	+1.4
12,475	-		GFF7089	0.65	-0.8
12,475	-		GFF7089	0.65	-0.9
12,475	-		GFF7089	0.65	-0.7
12,608	-		GFF7089	0.82	-0.3
12,637	+		GFF7089	0.86	-1.2
12,638	-		GFF7089	0.86	-0.5
12,718	-				+1.1
12,826	+				-0.5
12,827	-				-0.3
12,845	+		GFF7090	0.12	-0.4
12,845	+		GFF7090	0.12	-0.1
12,846	-		GFF7090	0.12	-0.6
12,848	+		GFF7090	0.13	-0.5
12,848	+		GFF7090	0.13	-1.1
12,848	+		GFF7090	0.13	-0.4
12,848	+		GFF7090	0.13	+1.0
12,848	+		GFF7090	0.13	+0.3
12,848	+		GFF7090	0.13	-0.4
12,849	-		GFF7090	0.13	-1.1
12,849	-		GFF7090	0.13	-0.8
12,849	-		GFF7090	0.13	-0.5
12,953	+		GFF7090	0.30	+0.5
12,954	-		GFF7090	0.30	+1.0
12,954	-		GFF7090	0.30	-0.7
12,954	-		GFF7090	0.30	+1.6
13,150	+		GFF7090	0.63	+0.1
13,151	-		GFF7090	0.64	-0.8
13,168	+		GFF7090	0.66	-0.0
13,168	+		GFF7090	0.66	-0.0
13,168	+		GFF7090	0.66	-0.1
13,168	+		GFF7090	0.66	+0.0
13,169	-		GFF7090	0.67	-0.9
13,169	-		GFF7090	0.67	-0.7
13,169	-		GFF7090	0.67	-0.9
13,214	+		GFF7090	0.74	-0.6
13,214	+		GFF7090	0.74	+1.1
13,214	+		GFF7090	0.74	-0.5
13,215	-		GFF7090	0.74	-0.3
13,233	-		GFF7090	0.77	+0.4
13,241	+		GFF7090	0.79	-0.2
13,241	+		GFF7090	0.79	-0.4
13,242	-		GFF7090	0.79	-1.3
13,332	+				+0.1
13,332	+				-0.2
13,332	+				+0.5
13,333	-				-0.8
13,333	-				-0.2
13,365	-				-0.7
13,365	-				-0.2
13,395	+		GFF7091	0.11	-0.7
13,409	+		GFF7091	0.19	+0.3
13,410	-		GFF7091	0.19	-0.3
13,449	-		GFF7091	0.41	+0.3
13,602	+		GFF7092	0.33	+0.3
13,602	+		GFF7092	0.33	-0.1
13,603	-		GFF7092	0.34	+0.3
13,603	-		GFF7092	0.34	-0.8
13,603	-		GFF7092	0.34	-0.3
13,603	-		GFF7092	0.34	-0.3
13,603	-		GFF7092	0.34	-0.5
13,667	+		GFF7092	0.76	-0.6
13,667	+		GFF7092	0.76	-0.0
13,668	-		GFF7092	0.76	-0.4
13,668	-		GFF7092	0.76	-0.8
13,668	-		GFF7092	0.76	+0.2
13,668	-		GFF7092	0.76	-1.1
13,668	-		GFF7092	0.76	-0.7
13,779	+				-1.5
13,779	+				-0.9
13,779	+				-0.6
13,780	-				-0.1
13,780	-				+0.2
13,783	+				+0.3
13,784	-				-0.4
13,784	-				-0.4
13,784	-				-1.4
13,784	-				-0.3
13,784	-				-1.6
13,841	+				+0.2
13,842	-				+0.3
13,842	-				-0.2
13,842	-				-1.4
13,842	-				-0.0
13,854	-				-0.2
13,871	+				+0.2
13,872	-				-0.6
13,895	+				+0.0
13,895	+				-0.3
13,895	+				-0.9
13,895	+				-0.1
13,895	+				+0.6
13,895	+				-0.3
13,896	-				-0.9
13,896	-				-1.2
13,896	-				-0.7
13,949	+				+1.1
13,950	-				+0.4
13,950	-				+0.7
13,950	-				+1.1
13,950	-				-2.2
13,990	+				+0.1
13,990	+				+0.6
13,990	+				-0.3
13,990	+				-0.7
13,990	+				-0.2
13,991	-				+0.4
14,003	+				-0.5
14,003	+				-0.5
14,004	-				+0.1
14,004	-				-0.9
14,167	+				+1.9
14,167	+				-0.3
14,168	-				-1.5
14,168	-				+0.1
14,168	-				-0.9
14,168	-				+0.9
14,168	-				+0.1
14,168	-				-0.2
14,168	-				-0.2
14,250	-		GFF7093	0.14	-0.9