Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7058 and GFF7059 are separated by 13 nucleotides GFF7059 and GFF7060 are separated by 156 nucleotides
GFF7058 - Zinc-binding GTPase YciC, at 18,026 to 19,219
GFF7058
GFF7059 - Zinc uptake regulation protein Zur, at 19,233 to 19,733
GFF7059
GFF7060 - BUG/TctC family periplasmic protein, at 19,890 to 20,885
GFF7060
Position (kb) 19
20 Strain fitness (log2 ratio) -2
-1
0
1 at 18.462 kb on - strand, within GFF7058 at 18.462 kb on - strand, within GFF7058 at 18.462 kb on - strand, within GFF7058 at 18.789 kb on - strand, within GFF7058 at 18.810 kb on - strand, within GFF7058 at 19.234 kb on + strand at 19.235 kb on - strand at 19.235 kb on - strand at 19.235 kb on - strand at 19.235 kb on - strand at 19.540 kb on + strand, within GFF7059 at 19.789 kb on + strand at 19.790 kb on - strand at 19.805 kb on + strand at 19.805 kb on + strand at 19.918 kb on + strand at 19.949 kb on - strand at 19.993 kb on - strand, within GFF7060 at 20.027 kb on + strand, within GFF7060 at 20.028 kb on - strand, within GFF7060 at 20.176 kb on - strand, within GFF7060 at 20.242 kb on - strand, within GFF7060 at 20.242 kb on - strand, within GFF7060 at 20.242 kb on - strand, within GFF7060 at 20.379 kb on + strand, within GFF7060 at 20.379 kb on + strand, within GFF7060 at 20.379 kb on + strand, within GFF7060 at 20.379 kb on + strand, within GFF7060 at 20.380 kb on - strand, within GFF7060 at 20.380 kb on - strand, within GFF7060 at 20.380 kb on - strand, within GFF7060 at 20.444 kb on + strand, within GFF7060 at 20.444 kb on + strand, within GFF7060 at 20.445 kb on - strand, within GFF7060 at 20.445 kb on - strand, within GFF7060 at 20.448 kb on + strand, within GFF7060 at 20.448 kb on + strand, within GFF7060 at 20.449 kb on - strand, within GFF7060 at 20.449 kb on - strand, within GFF7060 at 20.449 kb on - strand, within GFF7060 at 20.449 kb on - strand, within GFF7060 at 20.449 kb on - strand, within GFF7060 at 20.640 kb on + strand, within GFF7060 at 20.640 kb on + strand, within GFF7060 at 20.641 kb on - strand, within GFF7060 at 20.641 kb on - strand, within GFF7060 at 20.641 kb on - strand, within GFF7060 at 20.641 kb on - strand, within GFF7060 at 20.641 kb on - strand, within GFF7060
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 18,462 - GFF7058 0.37 -0.7 18,462 - GFF7058 0.37 -0.6 18,462 - GFF7058 0.37 -0.8 18,789 - GFF7058 0.64 -1.0 18,810 - GFF7058 0.66 -2.0 19,234 + -2.4 19,235 - -0.5 19,235 - +1.2 19,235 - -1.0 19,235 - -0.4 19,540 + GFF7059 0.61 -0.9 19,789 + +0.3 19,790 - +0.5 19,805 + +0.5 19,805 + -0.4 19,918 + +0.8 19,949 - -0.7 19,993 - GFF7060 0.10 +0.2 20,027 + GFF7060 0.14 -2.1 20,028 - GFF7060 0.14 -0.4 20,176 - GFF7060 0.29 -2.7 20,242 - GFF7060 0.35 +0.3 20,242 - GFF7060 0.35 -1.1 20,242 - GFF7060 0.35 +1.5 20,379 + GFF7060 0.49 -1.1 20,379 + GFF7060 0.49 -0.9 20,379 + GFF7060 0.49 +0.2 20,379 + GFF7060 0.49 +0.1 20,380 - GFF7060 0.49 +0.2 20,380 - GFF7060 0.49 -0.3 20,380 - GFF7060 0.49 -0.7 20,444 + GFF7060 0.56 +0.6 20,444 + GFF7060 0.56 -0.0 20,445 - GFF7060 0.56 +0.5 20,445 - GFF7060 0.56 -0.8 20,448 + GFF7060 0.56 -0.7 20,448 + GFF7060 0.56 +0.0 20,449 - GFF7060 0.56 +0.5 20,449 - GFF7060 0.56 +0.2 20,449 - GFF7060 0.56 +0.8 20,449 - GFF7060 0.56 +1.0 20,449 - GFF7060 0.56 -1.5 20,640 + GFF7060 0.75 +0.3 20,640 + GFF7060 0.75 +0.3 20,641 - GFF7060 0.75 -1.0 20,641 - GFF7060 0.75 -0.8 20,641 - GFF7060 0.75 -1.1 20,641 - GFF7060 0.75 -0.5 20,641 - GFF7060 0.75 +0.1
Or see this region's nucleotide sequence