Strain Fitness in Variovorax sp. SCN45 around GFF7058

Experiment: Community=Locust bean gum; Passage=1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=1
17,076	+				+0.3
17,076	+				+0.4
17,076	+				+0.5
17,121	+				-1.2
17,121	+				-0.2
17,121	+				-0.4
17,122	-				-0.7
17,122	-				-0.2
17,413	+		GFF7057	0.29	-0.2
17,413	+		GFF7057	0.29	+0.6
17,413	+		GFF7057	0.29	-0.5
17,413	+		GFF7057	0.29	+0.3
17,413	+		GFF7057	0.29	-0.3
17,413	+		GFF7057	0.29	+0.3
17,414	-		GFF7057	0.29	+0.1
17,414	-		GFF7057	0.29	+0.3
17,414	-		GFF7057	0.29	+0.8
17,414	-		GFF7057	0.29	-0.2
17,414	-		GFF7057	0.29	-1.1
17,414	-		GFF7057	0.29	-0.2
17,414	-		GFF7057	0.29	-0.3
17,414	-		GFF7057	0.29	-0.2
17,414	-		GFF7057	0.29	+0.3
17,414	-		GFF7057	0.29	-0.1
17,414	-		GFF7057	0.29	-0.3
17,414	-		GFF7057	0.29	-0.6
17,414	-		GFF7057	0.29	-1.1
17,414	-		GFF7057	0.29	-0.2
17,415	+		GFF7057	0.29	-0.5
17,415	+		GFF7057	0.29	-0.2
17,415	+		GFF7057	0.29	+0.2
17,415	+		GFF7057	0.29	-1.2
17,415	+		GFF7057	0.29	-0.6
17,415	+		GFF7057	0.29	-0.4
17,415	+		GFF7057	0.29	-0.4
17,415	+		GFF7057	0.29	+0.8
17,415	+		GFF7057	0.29	-1.2
17,415	+		GFF7057	0.29	+0.1
17,415	+		GFF7057	0.29	+0.3
17,416	-		GFF7057	0.29	-0.2
17,416	-		GFF7057	0.29	+0.8
17,416	-		GFF7057	0.29	+0.3
17,416	-		GFF7057	0.29	+0.0
17,416	-		GFF7057	0.29	-0.9
17,485	+		GFF7057	0.39	+0.8
17,485	+		GFF7057	0.39	-0.9
17,485	+		GFF7057	0.39	-0.5
17,485	+		GFF7057	0.39	+0.3
17,486	-		GFF7057	0.39	-0.8
17,486	-		GFF7057	0.39	-0.6
17,486	-		GFF7057	0.39	-0.6
17,573	+		GFF7057	0.51	-0.3
17,573	+		GFF7057	0.51	-0.0
17,573	+		GFF7057	0.51	+0.5
17,573	+		GFF7057	0.51	+0.9
17,574	-		GFF7057	0.51	-1.5
17,574	-		GFF7057	0.51	-1.2
17,574	-		GFF7057	0.51	-0.2
17,574	-		GFF7057	0.51	-1.0
17,574	-		GFF7057	0.51	-0.3
17,574	-		GFF7057	0.51	+0.6
17,574	-		GFF7057	0.51	-0.7
17,574	-		GFF7057	0.51	+0.0
17,701	+		GFF7057	0.69	-0.5
17,701	+		GFF7057	0.69	-0.6
17,918	-				-0.1
17,988	+				-2.7
17,990	+				-1.9
17,990	+				-0.2
17,990	+				-1.2
17,990	+				-1.8
17,990	+				-0.9
17,991	-				+1.1
17,991	-				-1.0
17,991	-				-0.6
18,008	+				+0.5
18,008	+				-0.8
18,008	+				-0.1
18,008	+				-0.2
18,009	-				-0.3
18,009	-				-0.1
18,009	-				-0.1
18,009	-				-0.4
18,009	-				+0.3
18,011	-				+0.0
18,462	-		GFF7058	0.37	-0.7
18,462	-		GFF7058	0.37	-0.6
18,462	-		GFF7058	0.37	-0.8
18,789	-		GFF7058	0.64	-1.0
18,810	-		GFF7058	0.66	-2.0
19,234	+				-2.4
19,235	-				-0.5
19,235	-				+1.2
19,235	-				-1.0
19,235	-				-0.4
19,540	+		GFF7059	0.61	-0.9
19,789	+				+0.3
19,790	-				+0.5
19,805	+				+0.5
19,805	+				-0.4
19,918	+				+0.8
19,949	-				-0.7
19,993	-		GFF7060	0.10	+0.2
20,027	+		GFF7060	0.14	-2.1
20,028	-		GFF7060	0.14	-0.4
20,176	-		GFF7060	0.29	-2.7