Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7013 and GFF7014 are separated by 177 nucleotides GFF7014 and GFF7015 are separated by 181 nucleotides GFF7015 and GFF7016 are separated by 43 nucleotides
GFF7013 - Taurine ABC transporter, substrate-binding protein TauA, at 28,345 to 29,355
GFF7013
GFF7014 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 29,533 to 31,068
GFF7014
GFF7015 - protein of unknown function DUF1486, at 31,250 to 31,630
GFF7015
GFF7016 - FAD-dependent oxidoreductase, at 31,674 to 33,164
GFF7016
Position (kb) 29
30
31
32 Strain fitness (log2 ratio) -2
-1
0
1 at 28.625 kb on + strand, within GFF7013 at 28.626 kb on - strand, within GFF7013 at 28.626 kb on - strand, within GFF7013 at 28.925 kb on + strand, within GFF7013 at 28.926 kb on - strand, within GFF7013 at 29.398 kb on - strand at 29.418 kb on - strand at 29.458 kb on + strand at 29.458 kb on + strand at 29.931 kb on - strand, within GFF7014 at 30.143 kb on + strand, within GFF7014 at 30.422 kb on + strand, within GFF7014 at 30.426 kb on - strand, within GFF7014 at 30.426 kb on - strand, within GFF7014 at 30.426 kb on - strand, within GFF7014 at 30.870 kb on - strand, within GFF7014 at 30.870 kb on - strand, within GFF7014 at 31.175 kb on + strand at 31.175 kb on + strand at 31.628 kb on + strand at 31.629 kb on - strand at 31.629 kb on - strand at 31.629 kb on - strand at 31.794 kb on + strand at 31.836 kb on + strand, within GFF7016 at 31.836 kb on + strand, within GFF7016
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 28,625 + GFF7013 0.28 +0.8 28,626 - GFF7013 0.28 -0.4 28,626 - GFF7013 0.28 -2.1 28,925 + GFF7013 0.57 -0.4 28,926 - GFF7013 0.57 -0.5 29,398 - -1.3 29,418 - -1.0 29,458 + -0.9 29,458 + +0.0 29,931 - GFF7014 0.26 -0.2 30,143 + GFF7014 0.40 -0.3 30,422 + GFF7014 0.58 -1.1 30,426 - GFF7014 0.58 -1.3 30,426 - GFF7014 0.58 -0.9 30,426 - GFF7014 0.58 -0.8 30,870 - GFF7014 0.87 +0.7 30,870 - GFF7014 0.87 -0.9 31,175 + -0.1 31,175 + +0.9 31,628 + -0.8 31,629 - -0.6 31,629 - -0.8 31,629 - -0.1 31,794 + +0.3 31,836 + GFF7016 0.11 -0.9 31,836 + GFF7016 0.11 -0.9
Or see this region's nucleotide sequence