Strain Fitness in Variovorax sp. SCN45 around GFF7006

Experiment: Community=Locust bean gum; Passage=1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF7005 and GFF7006 overlap by 1 nucleotidesGFF7006 and GFF7007 are separated by 101 nucleotidesGFF7007 and GFF7008 are separated by 114 nucleotides GFF7005 - Flagellar biosynthesis protein FlhB, at 21,691 to 22,785 GFF7005 GFF7006 - Flagellar biosynthesis protein FliR, at 22,785 to 23,501 GFF7006 GFF7007 - Flagellar biosynthesis protein FliQ, at 23,603 to 23,869 GFF7007 GFF7008 - no description, at 23,984 to 24,133 GFF7008 Position (kb) 22 23 24Strain fitness (log2 ratio) -3 -2 -1 0 1at 21.950 kb on + strand, within GFF7005at 22.072 kb on - strand, within GFF7005at 22.158 kb on - strand, within GFF7005at 22.158 kb on - strand, within GFF7005at 22.244 kb on + strand, within GFF7005at 22.274 kb on + strand, within GFF7005at 22.275 kb on - strand, within GFF7005at 22.275 kb on - strand, within GFF7005at 22.275 kb on - strand, within GFF7005at 22.597 kb on + strand, within GFF7005at 22.849 kb on + strandat 23.126 kb on - strand, within GFF7006at 23.126 kb on - strand, within GFF7006at 23.126 kb on - strand, within GFF7006at 23.188 kb on + strand, within GFF7006at 23.188 kb on + strand, within GFF7006at 23.189 kb on - strand, within GFF7006at 23.204 kb on + strand, within GFF7006at 23.205 kb on - strand, within GFF7006at 23.205 kb on - strand, within GFF7006at 23.316 kb on + strand, within GFF7006at 23.316 kb on + strand, within GFF7006at 23.317 kb on - strand, within GFF7006at 23.317 kb on - strand, within GFF7006at 23.482 kb on + strandat 23.483 kb on - strandat 23.541 kb on + strandat 23.541 kb on + strandat 23.542 kb on - strandat 23.542 kb on - strandat 23.542 kb on - strandat 23.542 kb on - strandat 23.870 kb on + strandat 23.871 kb on - strandat 23.909 kb on + strandat 23.940 kb on + strandat 23.941 kb on - strandat 23.941 kb on - strandat 24.048 kb on + strand, within GFF7008at 24.073 kb on - strand, within GFF7008at 24.169 kb on + strandat 24.182 kb on - strandat 24.251 kb on - strandat 24.265 kb on + strandat 24.265 kb on + strandat 24.265 kb on + strandat 24.266 kb on - strandat 24.266 kb on - strandat 24.350 kb on + strandat 24.351 kb on - strandat 24.383 kb on + strandat 24.383 kb on + strandat 24.383 kb on + strandat 24.383 kb on + strandat 24.383 kb on + strandat 24.384 kb on - strandat 24.384 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1
remove
21,950 + GFF7005 0.24 -1.7
22,072 - GFF7005 0.35 +0.6
22,158 - GFF7005 0.43 -1.9
22,158 - GFF7005 0.43 -1.6
22,244 + GFF7005 0.51 -0.7
22,274 + GFF7005 0.53 +0.1
22,275 - GFF7005 0.53 +0.7
22,275 - GFF7005 0.53 +0.9
22,275 - GFF7005 0.53 -0.0
22,597 + GFF7005 0.83 +0.1
22,849 + +0.9
23,126 - GFF7006 0.48 -0.9
23,126 - GFF7006 0.48 -0.4
23,126 - GFF7006 0.48 -2.8
23,188 + GFF7006 0.56 -1.6
23,188 + GFF7006 0.56 -0.2
23,189 - GFF7006 0.56 -0.5
23,204 + GFF7006 0.58 +0.7
23,205 - GFF7006 0.59 +0.7
23,205 - GFF7006 0.59 -0.3
23,316 + GFF7006 0.74 -0.1
23,316 + GFF7006 0.74 -0.1
23,317 - GFF7006 0.74 -0.6
23,317 - GFF7006 0.74 -0.5
23,482 + +0.7
23,483 - +0.0
23,541 + +0.1
23,541 + +0.1
23,542 - -0.2
23,542 - -0.8
23,542 - -1.8
23,542 - -0.4
23,870 + +0.4
23,871 - +0.0
23,909 + +0.7
23,940 + -0.9
23,941 - +0.1
23,941 - -0.3
24,048 + GFF7008 0.43 -1.0
24,073 - GFF7008 0.59 -1.6
24,169 + -0.3
24,182 - +0.4
24,251 - +0.7
24,265 + +0.1
24,265 + -0.0
24,265 + +0.6
24,266 - -0.3
24,266 - -0.5
24,350 + +0.0
24,351 - +0.0
24,383 + +1.7
24,383 + +0.9
24,383 + +0.6
24,383 + -0.2
24,383 + +0.1
24,384 - -0.6
24,384 - -0.6

Or see this region's nucleotide sequence