Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6995 and GFF6996 overlap by 4 nucleotides GFF6996 and GFF6997 overlap by 4 nucleotides GFF6997 and GFF6998 are separated by 1 nucleotides GFF6998 and GFF6999 are separated by 46 nucleotides
GFF6995 - Flagellar M-ring protein FliF, at 12,387 to 13,901
GFF6995
GFF6996 - Flagellar hook-basal body complex protein FliE, at 13,898 to 14,263
GFF6996
GFF6997 - Flagellar basal-body rod protein FlgC, at 14,260 to 14,709
GFF6997
GFF6998 - Flagellar basal-body rod protein FlgB, at 14,711 to 15,094
GFF6998
GFF6999 - Flagellar P-ring protein FlgI, at 15,141 to 16,277
GFF6999
Position (kb) 13
14
15 Strain fitness (log2 ratio) -1
0
1 at 13.204 kb on + strand, within GFF6995 at 13.880 kb on + strand at 13.880 kb on + strand at 13.901 kb on + strand at 13.915 kb on + strand at 14.048 kb on + strand, within GFF6996 at 14.337 kb on - strand, within GFF6997 at 14.439 kb on - strand, within GFF6997 at 14.702 kb on + strand at 14.915 kb on + strand, within GFF6998 at 14.979 kb on + strand, within GFF6998
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 13,204 + GFF6995 0.54 -0.9 13,880 + -0.8 13,880 + +1.7 13,901 + -0.0 13,915 + -0.0 14,048 + GFF6996 0.41 +0.3 14,337 - GFF6997 0.17 -0.4 14,439 - GFF6997 0.40 -0.9 14,702 + +0.1 14,915 + GFF6998 0.53 +0.1 14,979 + GFF6998 0.70 +0.1
Or see this region's nucleotide sequence