Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6830 and GFF6831 are separated by 19 nucleotides GFF6831 and GFF6832 are separated by 63 nucleotides GFF6832 and GFF6833 are separated by 2 nucleotides GFF6833 and GFF6834 are separated by 91 nucleotides GFF6834 and GFF6835 are separated by 67 nucleotides
GFF6830 - penicillin amidase family protein, at 14,868 to 17,288
GFF6830
GFF6831 - hypothetical protein, at 17,308 to 17,958
GFF6831
GFF6832 - DnaJ-class molecular chaperone CbpA, at 18,022 to 18,984
GFF6832
GFF6833 - FIG00432169: hypothetical protein, at 18,987 to 19,304
GFF6833
GFF6834 - no description, at 19,396 to 19,851
GFF6834
GFF6835 - DNA-3-methyladenine glycosylase (EC 3.2.2.20), at 19,919 to 20,503
GFF6835
Position (kb) 18
19 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 17.064 kb on + strand at 17.064 kb on + strand at 17.064 kb on + strand at 17.064 kb on + strand at 17.064 kb on + strand at 17.065 kb on - strand at 17.065 kb on - strand at 17.065 kb on - strand at 17.065 kb on - strand at 17.065 kb on - strand at 17.065 kb on - strand at 17.076 kb on + strand at 17.076 kb on + strand at 17.076 kb on + strand at 17.077 kb on - strand at 17.077 kb on - strand at 17.077 kb on - strand at 17.077 kb on - strand at 17.077 kb on - strand at 17.077 kb on - strand at 17.088 kb on + strand at 17.088 kb on + strand at 17.088 kb on + strand at 17.088 kb on + strand at 17.088 kb on + strand at 17.088 kb on + strand at 17.088 kb on + strand at 17.088 kb on + strand at 17.088 kb on + strand at 17.088 kb on + strand at 17.088 kb on + strand at 17.088 kb on + strand at 17.088 kb on + strand at 17.089 kb on - strand at 17.089 kb on - strand at 17.089 kb on - strand at 17.089 kb on - strand at 17.089 kb on - strand at 17.089 kb on - strand at 17.089 kb on - strand at 17.145 kb on + strand at 17.146 kb on - strand at 17.146 kb on - strand at 17.181 kb on + strand at 17.182 kb on - strand at 17.410 kb on + strand, within GFF6831 at 17.410 kb on + strand, within GFF6831 at 17.410 kb on + strand, within GFF6831 at 17.410 kb on + strand, within GFF6831 at 17.410 kb on + strand, within GFF6831 at 17.410 kb on + strand, within GFF6831 at 17.410 kb on + strand, within GFF6831 at 17.411 kb on - strand, within GFF6831 at 17.411 kb on - strand, within GFF6831 at 17.411 kb on - strand, within GFF6831 at 17.411 kb on - strand, within GFF6831 at 17.809 kb on + strand, within GFF6831 at 17.809 kb on + strand, within GFF6831 at 17.809 kb on + strand, within GFF6831 at 17.809 kb on + strand, within GFF6831 at 17.809 kb on + strand, within GFF6831 at 17.809 kb on + strand, within GFF6831 at 17.809 kb on + strand, within GFF6831 at 17.810 kb on - strand, within GFF6831 at 17.810 kb on - strand, within GFF6831 at 17.810 kb on - strand, within GFF6831 at 17.810 kb on - strand, within GFF6831 at 17.810 kb on - strand, within GFF6831 at 17.810 kb on - strand, within GFF6831 at 17.810 kb on - strand, within GFF6831 at 17.956 kb on + strand at 17.956 kb on + strand at 17.957 kb on - strand at 17.957 kb on - strand at 17.957 kb on - strand at 17.957 kb on - strand at 18.025 kb on + strand at 18.037 kb on + strand at 18.037 kb on + strand at 18.037 kb on + strand at 18.037 kb on + strand at 18.037 kb on + strand at 18.037 kb on + strand at 18.037 kb on + strand at 18.037 kb on + strand at 18.037 kb on + strand at 18.037 kb on + strand at 18.038 kb on - strand at 18.038 kb on - strand at 18.038 kb on - strand at 18.038 kb on - strand at 18.038 kb on - strand at 18.038 kb on - strand at 18.038 kb on - strand at 18.040 kb on + strand at 18.040 kb on + strand at 18.040 kb on + strand at 18.040 kb on + strand at 18.040 kb on + strand at 18.041 kb on - strand at 18.041 kb on - strand at 18.041 kb on - strand at 18.041 kb on - strand at 18.041 kb on - strand at 18.041 kb on - strand at 18.094 kb on + strand at 18.094 kb on + strand at 18.095 kb on - strand at 18.095 kb on - strand at 18.115 kb on + strand at 18.115 kb on + strand at 18.115 kb on + strand at 18.115 kb on + strand at 18.115 kb on + strand at 18.115 kb on + strand at 18.115 kb on + strand at 18.116 kb on - strand at 18.116 kb on - strand at 18.116 kb on - strand at 18.116 kb on - strand at 18.116 kb on - strand at 18.185 kb on + strand, within GFF6832 at 18.185 kb on + strand, within GFF6832 at 18.185 kb on + strand, within GFF6832 at 18.185 kb on + strand, within GFF6832 at 18.185 kb on + strand, within GFF6832 at 18.185 kb on + strand, within GFF6832 at 18.186 kb on - strand, within GFF6832 at 18.186 kb on - strand, within GFF6832 at 18.186 kb on - strand, within GFF6832 at 18.186 kb on - strand, within GFF6832 at 18.186 kb on - strand, within GFF6832 at 18.186 kb on - strand, within GFF6832 at 18.214 kb on + strand, within GFF6832 at 18.215 kb on - strand, within GFF6832 at 18.215 kb on - strand, within GFF6832 at 18.406 kb on + strand, within GFF6832 at 18.406 kb on + strand, within GFF6832 at 18.406 kb on + strand, within GFF6832 at 18.406 kb on + strand, within GFF6832 at 18.406 kb on + strand, within GFF6832 at 18.406 kb on + strand, within GFF6832 at 18.406 kb on + strand, within GFF6832 at 18.407 kb on - strand, within GFF6832 at 18.407 kb on - strand, within GFF6832 at 18.407 kb on - strand, within GFF6832 at 18.407 kb on - strand, within GFF6832 at 18.407 kb on - strand, within GFF6832 at 18.407 kb on - strand, within GFF6832 at 18.643 kb on + strand, within GFF6832 at 18.643 kb on + strand, within GFF6832 at 18.643 kb on + strand, within GFF6832 at 18.644 kb on - strand, within GFF6832 at 18.644 kb on - strand, within GFF6832 at 18.676 kb on + strand, within GFF6832 at 18.676 kb on + strand, within GFF6832 at 18.676 kb on + strand, within GFF6832 at 18.700 kb on + strand, within GFF6832 at 18.700 kb on + strand, within GFF6832 at 18.700 kb on + strand, within GFF6832 at 18.701 kb on - strand, within GFF6832 at 18.701 kb on - strand, within GFF6832 at 18.701 kb on - strand, within GFF6832 at 18.701 kb on - strand, within GFF6832 at 18.701 kb on - strand, within GFF6832 at 18.701 kb on - strand, within GFF6832 at 18.701 kb on - strand, within GFF6832 at 18.868 kb on + strand, within GFF6832 at 18.868 kb on + strand, within GFF6832 at 18.868 kb on + strand, within GFF6832 at 18.868 kb on + strand, within GFF6832 at 18.869 kb on - strand, within GFF6832 at 18.881 kb on - strand, within GFF6832 at 18.925 kb on + strand at 18.926 kb on - strand at 19.176 kb on + strand, within GFF6833 at 19.176 kb on + strand, within GFF6833 at 19.176 kb on + strand, within GFF6833 at 19.176 kb on + strand, within GFF6833 at 19.177 kb on - strand, within GFF6833 at 19.177 kb on - strand, within GFF6833 at 19.177 kb on - strand, within GFF6833 at 19.558 kb on + strand, within GFF6834 at 19.558 kb on + strand, within GFF6834 at 19.558 kb on + strand, within GFF6834 at 19.559 kb on - strand, within GFF6834 at 19.603 kb on + strand, within GFF6834 at 19.603 kb on + strand, within GFF6834 at 19.604 kb on - strand, within GFF6834 at 19.604 kb on - strand, within GFF6834 at 19.604 kb on - strand, within GFF6834 at 19.888 kb on + strand at 19.889 kb on - strand at 19.898 kb on + strand at 19.898 kb on + strand at 19.899 kb on - strand at 19.899 kb on - strand at 19.899 kb on - strand at 19.899 kb on - strand at 19.899 kb on - strand at 19.899 kb on - strand at 19.899 kb on - strand at 19.899 kb on - strand at 19.982 kb on + strand, within GFF6835 at 19.982 kb on + strand, within GFF6835 at 19.983 kb on - strand, within GFF6835 at 19.983 kb on - strand, within GFF6835
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 17,064 + -0.6 17,064 + -0.9 17,064 + -0.1 17,064 + -0.5 17,064 + -0.4 17,065 - -0.7 17,065 - +0.4 17,065 - -0.3 17,065 - +0.5 17,065 - -0.1 17,065 - +1.0 17,076 + -0.9 17,076 + +0.3 17,076 + -0.5 17,077 - -1.1 17,077 - -0.6 17,077 - -1.3 17,077 - +0.5 17,077 - +0.1 17,077 - +0.4 17,088 + -0.5 17,088 + -0.7 17,088 + -1.3 17,088 + -0.5 17,088 + +1.3 17,088 + +2.0 17,088 + +0.3 17,088 + -0.6 17,088 + -0.0 17,088 + +0.4 17,088 + +0.2 17,088 + +1.0 17,088 + +0.1 17,089 - +1.7 17,089 - -0.3 17,089 - +0.3 17,089 - +0.1 17,089 - -0.1 17,089 - -0.0 17,089 - -0.2 17,145 + +0.8 17,146 - -0.8 17,146 - -0.1 17,181 + +1.5 17,182 - -0.0 17,410 + GFF6831 0.16 -0.3 17,410 + GFF6831 0.16 -1.0 17,410 + GFF6831 0.16 +0.1 17,410 + GFF6831 0.16 +0.7 17,410 + GFF6831 0.16 -0.4 17,410 + GFF6831 0.16 -1.0 17,410 + GFF6831 0.16 -1.2 17,411 - GFF6831 0.16 -0.7 17,411 - GFF6831 0.16 -1.7 17,411 - GFF6831 0.16 -0.7 17,411 - GFF6831 0.16 +0.5 17,809 + GFF6831 0.77 +0.5 17,809 + GFF6831 0.77 -1.2 17,809 + GFF6831 0.77 -0.2 17,809 + GFF6831 0.77 -0.2 17,809 + GFF6831 0.77 +1.3 17,809 + GFF6831 0.77 -0.2 17,809 + GFF6831 0.77 +0.8 17,810 - GFF6831 0.77 +0.2 17,810 - GFF6831 0.77 +0.2 17,810 - GFF6831 0.77 +0.9 17,810 - GFF6831 0.77 -0.5 17,810 - GFF6831 0.77 -0.7 17,810 - GFF6831 0.77 -1.9 17,810 - GFF6831 0.77 +0.6 17,956 + -0.1 17,956 + -0.9 17,957 - -0.3 17,957 - +0.3 17,957 - -0.9 17,957 - -1.4 18,025 + -0.0 18,037 + -1.3 18,037 + -0.6 18,037 + -0.0 18,037 + -1.0 18,037 + -2.4 18,037 + +2.0 18,037 + -0.1 18,037 + -0.0 18,037 + +0.7 18,037 + -0.3 18,038 - -0.4 18,038 - -0.3 18,038 - -0.6 18,038 - -0.1 18,038 - -1.0 18,038 - -0.9 18,038 - +0.6 18,040 + -0.0 18,040 + +0.8 18,040 + -0.4 18,040 + -1.2 18,040 + +0.5 18,041 - -0.1 18,041 - +0.1 18,041 - -0.3 18,041 - -0.5 18,041 - +0.1 18,041 - -0.3 18,094 + +0.1 18,094 + +1.2 18,095 - +0.8 18,095 - -0.9 18,115 + -0.7 18,115 + -1.0 18,115 + -0.3 18,115 + -1.9 18,115 + +0.2 18,115 + -0.5 18,115 + -1.0 18,116 - +0.1 18,116 - +0.5 18,116 - -0.5 18,116 - +0.5 18,116 - +0.7 18,185 + GFF6832 0.17 -0.3 18,185 + GFF6832 0.17 +0.7 18,185 + GFF6832 0.17 -0.4 18,185 + GFF6832 0.17 -4.1 18,185 + GFF6832 0.17 -0.9 18,185 + GFF6832 0.17 -0.7 18,186 - GFF6832 0.17 -1.6 18,186 - GFF6832 0.17 -0.2 18,186 - GFF6832 0.17 +0.5 18,186 - GFF6832 0.17 -0.9 18,186 - GFF6832 0.17 -2.2 18,186 - GFF6832 0.17 -0.0 18,214 + GFF6832 0.20 -0.3 18,215 - GFF6832 0.20 -0.7 18,215 - GFF6832 0.20 -0.5 18,406 + GFF6832 0.40 -0.4 18,406 + GFF6832 0.40 -1.0 18,406 + GFF6832 0.40 +0.9 18,406 + GFF6832 0.40 +0.3 18,406 + GFF6832 0.40 -1.8 18,406 + GFF6832 0.40 -0.2 18,406 + GFF6832 0.40 -1.4 18,407 - GFF6832 0.40 -0.1 18,407 - GFF6832 0.40 +0.2 18,407 - GFF6832 0.40 -0.1 18,407 - GFF6832 0.40 -0.4 18,407 - GFF6832 0.40 -0.7 18,407 - GFF6832 0.40 +1.0 18,643 + GFF6832 0.64 -0.4 18,643 + GFF6832 0.64 +0.3 18,643 + GFF6832 0.64 -0.7 18,644 - GFF6832 0.65 -0.7 18,644 - GFF6832 0.65 +0.4 18,676 + GFF6832 0.68 +0.8 18,676 + GFF6832 0.68 -0.1 18,676 + GFF6832 0.68 -0.5 18,700 + GFF6832 0.70 -0.3 18,700 + GFF6832 0.70 -0.9 18,700 + GFF6832 0.70 -0.4 18,701 - GFF6832 0.71 -0.6 18,701 - GFF6832 0.71 -0.0 18,701 - GFF6832 0.71 -1.3 18,701 - GFF6832 0.71 -0.2 18,701 - GFF6832 0.71 -0.1 18,701 - GFF6832 0.71 -0.5 18,701 - GFF6832 0.71 -0.9 18,868 + GFF6832 0.88 -1.4 18,868 + GFF6832 0.88 -0.5 18,868 + GFF6832 0.88 -1.1 18,868 + GFF6832 0.88 +1.6 18,869 - GFF6832 0.88 +1.7 18,881 - GFF6832 0.89 -0.2 18,925 + -0.3 18,926 - -0.6 19,176 + GFF6833 0.59 -1.0 19,176 + GFF6833 0.59 -0.2 19,176 + GFF6833 0.59 -0.8 19,176 + GFF6833 0.59 -1.0 19,177 - GFF6833 0.60 -0.8 19,177 - GFF6833 0.60 -0.8 19,177 - GFF6833 0.60 -0.9 19,558 + GFF6834 0.36 -1.4 19,558 + GFF6834 0.36 +0.4 19,558 + GFF6834 0.36 -0.4 19,559 - GFF6834 0.36 -0.1 19,603 + GFF6834 0.45 -0.3 19,603 + GFF6834 0.45 -0.6 19,604 - GFF6834 0.46 -1.1 19,604 - GFF6834 0.46 +0.3 19,604 - GFF6834 0.46 -0.3 19,888 + -0.4 19,889 - -0.9 19,898 + -0.6 19,898 + -0.3 19,899 - +0.5 19,899 - -0.0 19,899 - -0.0 19,899 - +0.4 19,899 - -0.3 19,899 - +0.8 19,899 - -2.0 19,899 - -0.1 19,982 + GFF6835 0.11 -0.3 19,982 + GFF6835 0.11 +0.3 19,983 - GFF6835 0.11 -0.8 19,983 - GFF6835 0.11 -0.7
Or see this region's nucleotide sequence