Strain Fitness in Variovorax sp. SCN45 around GFF6696

Experiment: Community=Locust bean gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6695 and GFF6696 are separated by 33 nucleotidesGFF6696 and GFF6697 are separated by 99 nucleotidesGFF6697 and GFF6698 are separated by 41 nucleotides GFF6695 - Ubiquinol-cytochrome C reductase, cytochrome B subunit (EC 1.10.2.2), at 3,143 to 4,579 GFF6695 GFF6696 - Ubiquinol-cytochrome C reductase, cytochrome C1 subunit, at 4,613 to 5,389 GFF6696 GFF6697 - Stringent starvation protein A, at 5,489 to 6,100 GFF6697 GFF6698 - ClpXP protease specificity-enhancing factor SspB, at 6,142 to 6,723 GFF6698 Position (kb) 4 5 6Strain fitness (log2 ratio) -2 -1 0 1 2at 3.701 kb on + strand, within GFF6695at 3.702 kb on - strand, within GFF6695at 3.896 kb on + strand, within GFF6695at 3.896 kb on + strand, within GFF6695at 3.897 kb on - strand, within GFF6695at 3.899 kb on + strand, within GFF6695at 3.900 kb on - strand, within GFF6695at 3.983 kb on + strand, within GFF6695at 3.983 kb on + strand, within GFF6695at 3.995 kb on + strand, within GFF6695at 3.996 kb on - strand, within GFF6695at 4.055 kb on + strand, within GFF6695at 4.056 kb on - strand, within GFF6695at 4.071 kb on - strand, within GFF6695at 4.349 kb on + strand, within GFF6695at 4.349 kb on + strand, within GFF6695at 4.349 kb on + strand, within GFF6695at 4.349 kb on + strand, within GFF6695at 4.349 kb on + strand, within GFF6695at 4.349 kb on + strand, within GFF6695at 4.349 kb on + strand, within GFF6695at 4.349 kb on + strand, within GFF6695at 4.349 kb on + strand, within GFF6695at 4.350 kb on - strand, within GFF6695at 4.350 kb on - strand, within GFF6695at 4.350 kb on - strand, within GFF6695at 4.350 kb on - strand, within GFF6695at 4.350 kb on - strand, within GFF6695at 4.350 kb on - strand, within GFF6695at 4.350 kb on - strand, within GFF6695at 4.350 kb on - strand, within GFF6695at 4.356 kb on - strand, within GFF6695at 4.781 kb on + strand, within GFF6696at 4.781 kb on + strand, within GFF6696at 4.781 kb on + strand, within GFF6696at 4.781 kb on + strand, within GFF6696at 4.781 kb on + strand, within GFF6696at 4.818 kb on - strand, within GFF6696at 4.915 kb on - strand, within GFF6696at 5.012 kb on + strand, within GFF6696at 5.012 kb on + strand, within GFF6696at 5.012 kb on + strand, within GFF6696at 5.012 kb on + strand, within GFF6696at 5.012 kb on + strand, within GFF6696at 5.012 kb on + strand, within GFF6696at 5.013 kb on - strand, within GFF6696at 5.018 kb on + strand, within GFF6696at 5.018 kb on + strand, within GFF6696at 5.018 kb on + strand, within GFF6696at 5.018 kb on + strand, within GFF6696at 5.019 kb on - strand, within GFF6696at 5.019 kb on - strand, within GFF6696at 5.019 kb on - strand, within GFF6696at 5.019 kb on - strand, within GFF6696at 5.019 kb on - strand, within GFF6696at 5.019 kb on - strand, within GFF6696at 5.024 kb on + strand, within GFF6696at 5.024 kb on + strand, within GFF6696at 5.024 kb on + strand, within GFF6696at 5.025 kb on - strand, within GFF6696at 5.025 kb on - strand, within GFF6696at 5.025 kb on - strand, within GFF6696at 5.036 kb on + strand, within GFF6696at 5.036 kb on + strand, within GFF6696at 5.036 kb on + strand, within GFF6696at 5.036 kb on + strand, within GFF6696at 5.037 kb on - strand, within GFF6696at 5.037 kb on - strand, within GFF6696at 5.037 kb on - strand, within GFF6696at 5.039 kb on + strand, within GFF6696at 5.039 kb on + strand, within GFF6696at 5.040 kb on - strand, within GFF6696at 5.228 kb on + strand, within GFF6696at 5.228 kb on + strand, within GFF6696at 5.258 kb on + strand, within GFF6696at 5.258 kb on + strand, within GFF6696at 5.259 kb on - strand, within GFF6696at 5.369 kb on + strandat 5.388 kb on - strandat 6.098 kb on + strandat 6.098 kb on + strandat 6.098 kb on + strandat 6.099 kb on - strandat 6.099 kb on - strandat 6.099 kb on - strandat 6.102 kb on + strandat 6.102 kb on + strandat 6.102 kb on + strandat 6.103 kb on - strandat 6.103 kb on - strandat 6.103 kb on - strandat 6.178 kb on + strandat 6.184 kb on - strandat 6.196 kb on + strandat 6.196 kb on + strandat 6.196 kb on + strandat 6.197 kb on - strandat 6.197 kb on - strandat 6.197 kb on - strandat 6.197 kb on - strandat 6.229 kb on + strand, within GFF6698at 6.229 kb on + strand, within GFF6698at 6.229 kb on + strand, within GFF6698at 6.230 kb on - strand, within GFF6698at 6.230 kb on - strand, within GFF6698at 6.230 kb on - strand, within GFF6698at 6.275 kb on - strand, within GFF6698

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1
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3,701 + GFF6695 0.39 -2.0
3,702 - GFF6695 0.39 +0.8
3,896 + GFF6695 0.52 +0.8
3,896 + GFF6695 0.52 +0.1
3,897 - GFF6695 0.52 -0.8
3,899 + GFF6695 0.53 -0.8
3,900 - GFF6695 0.53 -0.1
3,983 + GFF6695 0.58 -0.8
3,983 + GFF6695 0.58 -0.3
3,995 + GFF6695 0.59 -0.4
3,996 - GFF6695 0.59 +0.5
4,055 + GFF6695 0.63 -1.0
4,056 - GFF6695 0.64 -1.7
4,071 - GFF6695 0.65 -0.5
4,349 + GFF6695 0.84 -1.4
4,349 + GFF6695 0.84 -1.2
4,349 + GFF6695 0.84 -1.2
4,349 + GFF6695 0.84 -0.2
4,349 + GFF6695 0.84 +0.2
4,349 + GFF6695 0.84 -1.0
4,349 + GFF6695 0.84 -1.4
4,349 + GFF6695 0.84 -0.8
4,349 + GFF6695 0.84 +0.5
4,350 - GFF6695 0.84 -0.1
4,350 - GFF6695 0.84 -1.1
4,350 - GFF6695 0.84 -0.1
4,350 - GFF6695 0.84 -1.8
4,350 - GFF6695 0.84 -0.8
4,350 - GFF6695 0.84 -0.5
4,350 - GFF6695 0.84 -1.8
4,350 - GFF6695 0.84 +0.5
4,356 - GFF6695 0.84 -0.6
4,781 + GFF6696 0.22 -0.4
4,781 + GFF6696 0.22 +1.5
4,781 + GFF6696 0.22 -0.6
4,781 + GFF6696 0.22 -0.2
4,781 + GFF6696 0.22 +0.4
4,818 - GFF6696 0.26 -0.3
4,915 - GFF6696 0.39 -0.9
5,012 + GFF6696 0.51 -1.0
5,012 + GFF6696 0.51 -1.1
5,012 + GFF6696 0.51 -0.9
5,012 + GFF6696 0.51 -0.8
5,012 + GFF6696 0.51 -0.7
5,012 + GFF6696 0.51 -0.9
5,013 - GFF6696 0.51 -1.3
5,018 + GFF6696 0.52 -0.5
5,018 + GFF6696 0.52 -0.1
5,018 + GFF6696 0.52 -1.9
5,018 + GFF6696 0.52 -1.1
5,019 - GFF6696 0.52 -0.1
5,019 - GFF6696 0.52 +0.5
5,019 - GFF6696 0.52 -1.6
5,019 - GFF6696 0.52 -1.5
5,019 - GFF6696 0.52 -1.1
5,019 - GFF6696 0.52 -0.8
5,024 + GFF6696 0.53 -1.2
5,024 + GFF6696 0.53 -0.7
5,024 + GFF6696 0.53 -0.2
5,025 - GFF6696 0.53 +1.5
5,025 - GFF6696 0.53 -1.1
5,025 - GFF6696 0.53 -1.1
5,036 + GFF6696 0.54 -0.5
5,036 + GFF6696 0.54 -0.9
5,036 + GFF6696 0.54 -0.2
5,036 + GFF6696 0.54 -0.8
5,037 - GFF6696 0.55 +0.5
5,037 - GFF6696 0.55 +1.5
5,037 - GFF6696 0.55 +0.1
5,039 + GFF6696 0.55 -1.3
5,039 + GFF6696 0.55 -2.0
5,040 - GFF6696 0.55 +0.9
5,228 + GFF6696 0.79 -0.5
5,228 + GFF6696 0.79 -1.3
5,258 + GFF6696 0.83 -1.7
5,258 + GFF6696 0.83 -0.4
5,259 - GFF6696 0.83 -1.1
5,369 + +0.4
5,388 - -0.5
6,098 + -0.5
6,098 + -0.3
6,098 + -0.5
6,099 - +0.8
6,099 - +1.9
6,099 - -0.2
6,102 + -0.1
6,102 + -0.5
6,102 + -0.9
6,103 - -1.2
6,103 - -0.6
6,103 - -1.0
6,178 + -0.2
6,184 - -0.7
6,196 + -0.1
6,196 + -1.7
6,196 + +0.4
6,197 - +1.6
6,197 - +1.3
6,197 - +0.3
6,197 - +0.5
6,229 + GFF6698 0.15 -0.4
6,229 + GFF6698 0.15 -0.6
6,229 + GFF6698 0.15 +1.5
6,230 - GFF6698 0.15 -0.4
6,230 - GFF6698 0.15 -0.3
6,230 - GFF6698 0.15 -1.1
6,275 - GFF6698 0.23 -0.4

Or see this region's nucleotide sequence