Strain Fitness in Variovorax sp. SCN45 around GFF6695

Experiment: Community=Locust bean gum; Passage=1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF6693 and GFF6694 are separated by 190 nucleotidesGFF6694 and GFF6695 are separated by 14 nucleotidesGFF6695 and GFF6696 are separated by 33 nucleotidesGFF6696 and GFF6697 are separated by 99 nucleotides GFF6693 - Two-component transcriptional response regulator, LuxR family, at 1,550 to 2,320 GFF6693 GFF6694 - Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2), at 2,511 to 3,128 GFF6694 GFF6695 - Ubiquinol-cytochrome C reductase, cytochrome B subunit (EC 1.10.2.2), at 3,143 to 4,579 GFF6695 GFF6696 - Ubiquinol-cytochrome C reductase, cytochrome C1 subunit, at 4,613 to 5,389 GFF6696 GFF6697 - Stringent starvation protein A, at 5,489 to 6,100 GFF6697 Position (kb) 3 4 5Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2.207 kb on + strand, within GFF6693at 2.207 kb on + strand, within GFF6693at 2.207 kb on + strand, within GFF6693at 2.207 kb on + strand, within GFF6693at 2.207 kb on + strand, within GFF6693at 2.208 kb on - strand, within GFF6693at 2.208 kb on - strand, within GFF6693at 2.208 kb on - strand, within GFF6693at 2.208 kb on - strand, within GFF6693at 2.208 kb on - strand, within GFF6693at 2.249 kb on + strandat 2.249 kb on + strandat 2.249 kb on + strandat 2.249 kb on + strandat 2.250 kb on - strandat 2.681 kb on + strand, within GFF6694at 2.844 kb on + strand, within GFF6694at 2.844 kb on + strand, within GFF6694at 2.844 kb on + strand, within GFF6694at 2.844 kb on + strand, within GFF6694at 2.845 kb on - strand, within GFF6694at 2.845 kb on - strand, within GFF6694at 2.845 kb on - strand, within GFF6694at 3.078 kb on + strandat 3.078 kb on + strandat 3.078 kb on + strandat 3.078 kb on + strandat 3.078 kb on + strandat 3.078 kb on + strandat 3.078 kb on + strandat 3.078 kb on + strandat 3.078 kb on + strandat 3.078 kb on + strandat 3.078 kb on + strandat 3.078 kb on + strandat 3.079 kb on - strandat 3.079 kb on - strandat 3.254 kb on + strandat 3.254 kb on + strandat 3.255 kb on - strandat 3.255 kb on - strandat 3.255 kb on - strandat 3.255 kb on - strandat 3.255 kb on - strandat 3.255 kb on - strandat 3.258 kb on - strandat 3.258 kb on - strandat 3.284 kb on + strandat 3.284 kb on + strandat 3.285 kb on - strandat 3.285 kb on - strandat 3.356 kb on + strand, within GFF6695at 3.356 kb on + strand, within GFF6695at 3.356 kb on + strand, within GFF6695at 3.395 kb on + strand, within GFF6695at 3.395 kb on + strand, within GFF6695at 3.395 kb on + strand, within GFF6695at 3.395 kb on + strand, within GFF6695at 3.395 kb on + strand, within GFF6695at 3.396 kb on - strand, within GFF6695at 3.434 kb on + strand, within GFF6695at 3.476 kb on + strand, within GFF6695at 3.476 kb on + strand, within GFF6695at 3.476 kb on + strand, within GFF6695at 3.476 kb on + strand, within GFF6695at 3.477 kb on - strand, within GFF6695at 3.477 kb on - strand, within GFF6695at 3.477 kb on - strand, within GFF6695at 3.503 kb on + strand, within GFF6695at 3.503 kb on + strand, within GFF6695at 3.503 kb on + strand, within GFF6695at 3.503 kb on + strand, within GFF6695at 3.503 kb on + strand, within GFF6695at 3.504 kb on - strand, within GFF6695at 3.512 kb on + strand, within GFF6695at 3.590 kb on + strand, within GFF6695at 3.591 kb on - strand, within GFF6695at 3.591 kb on - strand, within GFF6695at 3.591 kb on - strand, within GFF6695at 3.591 kb on - strand, within GFF6695at 3.701 kb on + strand, within GFF6695at 3.702 kb on - strand, within GFF6695at 3.896 kb on + strand, within GFF6695at 3.896 kb on + strand, within GFF6695at 3.897 kb on - strand, within GFF6695at 3.899 kb on + strand, within GFF6695at 3.900 kb on - strand, within GFF6695at 3.983 kb on + strand, within GFF6695at 3.983 kb on + strand, within GFF6695at 3.995 kb on + strand, within GFF6695at 3.996 kb on - strand, within GFF6695at 4.055 kb on + strand, within GFF6695at 4.056 kb on - strand, within GFF6695at 4.071 kb on - strand, within GFF6695at 4.349 kb on + strand, within GFF6695at 4.349 kb on + strand, within GFF6695at 4.349 kb on + strand, within GFF6695at 4.349 kb on + strand, within GFF6695at 4.349 kb on + strand, within GFF6695at 4.349 kb on + strand, within GFF6695at 4.349 kb on + strand, within GFF6695at 4.349 kb on + strand, within GFF6695at 4.349 kb on + strand, within GFF6695at 4.350 kb on - strand, within GFF6695at 4.350 kb on - strand, within GFF6695at 4.350 kb on - strand, within GFF6695at 4.350 kb on - strand, within GFF6695at 4.350 kb on - strand, within GFF6695at 4.350 kb on - strand, within GFF6695at 4.350 kb on - strand, within GFF6695at 4.350 kb on - strand, within GFF6695at 4.356 kb on - strand, within GFF6695at 4.781 kb on + strand, within GFF6696at 4.781 kb on + strand, within GFF6696at 4.781 kb on + strand, within GFF6696at 4.781 kb on + strand, within GFF6696at 4.781 kb on + strand, within GFF6696at 4.818 kb on - strand, within GFF6696at 4.915 kb on - strand, within GFF6696at 5.012 kb on + strand, within GFF6696at 5.012 kb on + strand, within GFF6696at 5.012 kb on + strand, within GFF6696at 5.012 kb on + strand, within GFF6696at 5.012 kb on + strand, within GFF6696at 5.012 kb on + strand, within GFF6696at 5.013 kb on - strand, within GFF6696at 5.018 kb on + strand, within GFF6696at 5.018 kb on + strand, within GFF6696at 5.018 kb on + strand, within GFF6696at 5.018 kb on + strand, within GFF6696at 5.019 kb on - strand, within GFF6696at 5.019 kb on - strand, within GFF6696at 5.019 kb on - strand, within GFF6696at 5.019 kb on - strand, within GFF6696at 5.019 kb on - strand, within GFF6696at 5.019 kb on - strand, within GFF6696at 5.024 kb on + strand, within GFF6696at 5.024 kb on + strand, within GFF6696at 5.024 kb on + strand, within GFF6696at 5.025 kb on - strand, within GFF6696at 5.025 kb on - strand, within GFF6696at 5.025 kb on - strand, within GFF6696at 5.036 kb on + strand, within GFF6696at 5.036 kb on + strand, within GFF6696at 5.036 kb on + strand, within GFF6696at 5.036 kb on + strand, within GFF6696at 5.037 kb on - strand, within GFF6696at 5.037 kb on - strand, within GFF6696at 5.037 kb on - strand, within GFF6696at 5.039 kb on + strand, within GFF6696at 5.039 kb on + strand, within GFF6696at 5.040 kb on - strand, within GFF6696at 5.228 kb on + strand, within GFF6696at 5.228 kb on + strand, within GFF6696at 5.258 kb on + strand, within GFF6696at 5.258 kb on + strand, within GFF6696at 5.259 kb on - strand, within GFF6696at 5.369 kb on + strandat 5.388 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1
remove
2,207 + GFF6693 0.85 -0.2
2,207 + GFF6693 0.85 +0.5
2,207 + GFF6693 0.85 -0.6
2,207 + GFF6693 0.85 -1.1
2,207 + GFF6693 0.85 -0.1
2,208 - GFF6693 0.85 +0.1
2,208 - GFF6693 0.85 -0.8
2,208 - GFF6693 0.85 +0.7
2,208 - GFF6693 0.85 +0.3
2,208 - GFF6693 0.85 +0.5
2,249 + -0.6
2,249 + -0.6
2,249 + -0.4
2,249 + -1.0
2,250 - -0.2
2,681 + GFF6694 0.28 -1.7
2,844 + GFF6694 0.54 +1.8
2,844 + GFF6694 0.54 -1.3
2,844 + GFF6694 0.54 +0.5
2,844 + GFF6694 0.54 -0.8
2,845 - GFF6694 0.54 -0.5
2,845 - GFF6694 0.54 -0.8
2,845 - GFF6694 0.54 +1.5
3,078 + +0.3
3,078 + -1.4
3,078 + -1.7
3,078 + -1.6
3,078 + -0.8
3,078 + +1.5
3,078 + +0.5
3,078 + -1.5
3,078 + -0.4
3,078 + -1.0
3,078 + -0.5
3,078 + -0.3
3,079 - +0.5
3,079 - +1.5
3,254 + +0.9
3,254 + +0.1
3,255 - -0.5
3,255 - -1.5
3,255 - -0.8
3,255 - +0.5
3,255 - -1.0
3,255 - +0.8
3,258 - -1.2
3,258 - +2.1
3,284 + -0.9
3,284 + -2.9
3,285 - +1.5
3,285 - -1.1
3,356 + GFF6695 0.15 -1.0
3,356 + GFF6695 0.15 -0.8
3,356 + GFF6695 0.15 +0.2
3,395 + GFF6695 0.18 -1.5
3,395 + GFF6695 0.18 -1.0
3,395 + GFF6695 0.18 -0.8
3,395 + GFF6695 0.18 -2.5
3,395 + GFF6695 0.18 -0.8
3,396 - GFF6695 0.18 -1.7
3,434 + GFF6695 0.20 -1.8
3,476 + GFF6695 0.23 -0.5
3,476 + GFF6695 0.23 -1.1
3,476 + GFF6695 0.23 -1.3
3,476 + GFF6695 0.23 -1.3
3,477 - GFF6695 0.23 -0.1
3,477 - GFF6695 0.23 +1.5
3,477 - GFF6695 0.23 -1.5
3,503 + GFF6695 0.25 -1.4
3,503 + GFF6695 0.25 -1.1
3,503 + GFF6695 0.25 -2.1
3,503 + GFF6695 0.25 -0.5
3,503 + GFF6695 0.25 -3.3
3,504 - GFF6695 0.25 -0.4
3,512 + GFF6695 0.26 -0.1
3,590 + GFF6695 0.31 +0.5
3,591 - GFF6695 0.31 -0.1
3,591 - GFF6695 0.31 -1.7
3,591 - GFF6695 0.31 -1.3
3,591 - GFF6695 0.31 -1.5
3,701 + GFF6695 0.39 -2.0
3,702 - GFF6695 0.39 +0.8
3,896 + GFF6695 0.52 +0.8
3,896 + GFF6695 0.52 +0.1
3,897 - GFF6695 0.52 -0.8
3,899 + GFF6695 0.53 -0.8
3,900 - GFF6695 0.53 -0.1
3,983 + GFF6695 0.58 -0.8
3,983 + GFF6695 0.58 -0.3
3,995 + GFF6695 0.59 -0.4
3,996 - GFF6695 0.59 +0.5
4,055 + GFF6695 0.63 -1.0
4,056 - GFF6695 0.64 -1.7
4,071 - GFF6695 0.65 -0.5
4,349 + GFF6695 0.84 -1.4
4,349 + GFF6695 0.84 -1.2
4,349 + GFF6695 0.84 -1.2
4,349 + GFF6695 0.84 -0.2
4,349 + GFF6695 0.84 +0.2
4,349 + GFF6695 0.84 -1.0
4,349 + GFF6695 0.84 -1.4
4,349 + GFF6695 0.84 -0.8
4,349 + GFF6695 0.84 +0.5
4,350 - GFF6695 0.84 -0.1
4,350 - GFF6695 0.84 -1.1
4,350 - GFF6695 0.84 -0.1
4,350 - GFF6695 0.84 -1.8
4,350 - GFF6695 0.84 -0.8
4,350 - GFF6695 0.84 -0.5
4,350 - GFF6695 0.84 -1.8
4,350 - GFF6695 0.84 +0.5
4,356 - GFF6695 0.84 -0.6
4,781 + GFF6696 0.22 -0.4
4,781 + GFF6696 0.22 +1.5
4,781 + GFF6696 0.22 -0.6
4,781 + GFF6696 0.22 -0.2
4,781 + GFF6696 0.22 +0.4
4,818 - GFF6696 0.26 -0.3
4,915 - GFF6696 0.39 -0.9
5,012 + GFF6696 0.51 -1.0
5,012 + GFF6696 0.51 -1.1
5,012 + GFF6696 0.51 -0.9
5,012 + GFF6696 0.51 -0.8
5,012 + GFF6696 0.51 -0.7
5,012 + GFF6696 0.51 -0.9
5,013 - GFF6696 0.51 -1.3
5,018 + GFF6696 0.52 -0.5
5,018 + GFF6696 0.52 -0.1
5,018 + GFF6696 0.52 -1.9
5,018 + GFF6696 0.52 -1.1
5,019 - GFF6696 0.52 -0.1
5,019 - GFF6696 0.52 +0.5
5,019 - GFF6696 0.52 -1.6
5,019 - GFF6696 0.52 -1.5
5,019 - GFF6696 0.52 -1.1
5,019 - GFF6696 0.52 -0.8
5,024 + GFF6696 0.53 -1.2
5,024 + GFF6696 0.53 -0.7
5,024 + GFF6696 0.53 -0.2
5,025 - GFF6696 0.53 +1.5
5,025 - GFF6696 0.53 -1.1
5,025 - GFF6696 0.53 -1.1
5,036 + GFF6696 0.54 -0.5
5,036 + GFF6696 0.54 -0.9
5,036 + GFF6696 0.54 -0.2
5,036 + GFF6696 0.54 -0.8
5,037 - GFF6696 0.55 +0.5
5,037 - GFF6696 0.55 +1.5
5,037 - GFF6696 0.55 +0.1
5,039 + GFF6696 0.55 -1.3
5,039 + GFF6696 0.55 -2.0
5,040 - GFF6696 0.55 +0.9
5,228 + GFF6696 0.79 -0.5
5,228 + GFF6696 0.79 -1.3
5,258 + GFF6696 0.83 -1.7
5,258 + GFF6696 0.83 -0.4
5,259 - GFF6696 0.83 -1.1
5,369 + +0.4
5,388 - -0.5

Or see this region's nucleotide sequence