Strain Fitness in Variovorax sp. SCN45 around GFF6694

Experiment: Community=Locust bean gum; Passage=1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=1
1,561	+				-0.5
1,561	+				-0.1
1,613	+				-0.7
1,613	+				-0.0
1,613	+				-0.0
1,613	+				-0.1
1,613	+				-2.2
1,613	+				-0.5
1,613	+				-1.1
1,613	+				-0.8
1,614	-				-0.1
1,614	-				-0.5
1,614	-				-0.6
1,614	-				+0.1
1,614	-				-0.1
1,614	-				-0.8
1,614	-				-0.5
1,841	+		GFF6693	0.38	-0.9
1,841	+		GFF6693	0.38	-0.2
1,842	-		GFF6693	0.38	+0.9
1,842	-		GFF6693	0.38	-1.4
1,961	+		GFF6693	0.53	-1.2
1,961	+		GFF6693	0.53	-0.1
1,962	-		GFF6693	0.53	+0.4
2,022	+		GFF6693	0.61	+0.1
2,207	+		GFF6693	0.85	-0.2
2,207	+		GFF6693	0.85	+0.5
2,207	+		GFF6693	0.85	-0.6
2,207	+		GFF6693	0.85	-1.1
2,207	+		GFF6693	0.85	-0.1
2,208	-		GFF6693	0.85	+0.1
2,208	-		GFF6693	0.85	-0.8
2,208	-		GFF6693	0.85	+0.7
2,208	-		GFF6693	0.85	+0.3
2,208	-		GFF6693	0.85	+0.5
2,249	+				-0.6
2,249	+				-0.6
2,249	+				-0.4
2,249	+				-1.0
2,250	-				-0.2
2,681	+		GFF6694	0.28	-1.7
2,844	+		GFF6694	0.54	+1.8
2,844	+		GFF6694	0.54	-1.3
2,844	+		GFF6694	0.54	+0.5
2,844	+		GFF6694	0.54	-0.8
2,845	-		GFF6694	0.54	-0.5
2,845	-		GFF6694	0.54	-0.8
2,845	-		GFF6694	0.54	+1.5
3,078	+				+0.3
3,078	+				-1.4
3,078	+				-1.7
3,078	+				-1.6
3,078	+				-0.8
3,078	+				+1.5
3,078	+				+0.5
3,078	+				-1.5
3,078	+				-0.4
3,078	+				-1.0
3,078	+				-0.5
3,078	+				-0.3
3,079	-				+0.5
3,079	-				+1.5
3,254	+				+0.9
3,254	+				+0.1
3,255	-				-0.5
3,255	-				-1.5
3,255	-				-0.8
3,255	-				+0.5
3,255	-				-1.0
3,255	-				+0.8
3,258	-				-1.2
3,258	-				+2.1
3,284	+				-0.9
3,284	+				-2.9
3,285	-				+1.5
3,285	-				-1.1
3,356	+		GFF6695	0.15	-1.0
3,356	+		GFF6695	0.15	-0.8
3,356	+		GFF6695	0.15	+0.2
3,395	+		GFF6695	0.18	-1.5
3,395	+		GFF6695	0.18	-1.0
3,395	+		GFF6695	0.18	-0.8
3,395	+		GFF6695	0.18	-2.5
3,395	+		GFF6695	0.18	-0.8
3,396	-		GFF6695	0.18	-1.7
3,434	+		GFF6695	0.20	-1.8
3,476	+		GFF6695	0.23	-0.5
3,476	+		GFF6695	0.23	-1.1
3,476	+		GFF6695	0.23	-1.3
3,476	+		GFF6695	0.23	-1.3
3,477	-		GFF6695	0.23	-0.1
3,477	-		GFF6695	0.23	+1.5
3,477	-		GFF6695	0.23	-1.5
3,503	+		GFF6695	0.25	-1.4
3,503	+		GFF6695	0.25	-1.1
3,503	+		GFF6695	0.25	-2.1
3,503	+		GFF6695	0.25	-0.5
3,503	+		GFF6695	0.25	-3.3
3,504	-		GFF6695	0.25	-0.4
3,512	+		GFF6695	0.26	-0.1
3,590	+		GFF6695	0.31	+0.5
3,591	-		GFF6695	0.31	-0.1
3,591	-		GFF6695	0.31	-1.7
3,591	-		GFF6695	0.31	-1.3
3,591	-		GFF6695	0.31	-1.5
3,701	+		GFF6695	0.39	-2.0
3,702	-		GFF6695	0.39	+0.8
3,896	+		GFF6695	0.52	+0.8
3,896	+		GFF6695	0.52	+0.1
3,897	-		GFF6695	0.52	-0.8
3,899	+		GFF6695	0.53	-0.8
3,900	-		GFF6695	0.53	-0.1
3,983	+		GFF6695	0.58	-0.8
3,983	+		GFF6695	0.58	-0.3
3,995	+		GFF6695	0.59	-0.4
3,996	-		GFF6695	0.59	+0.5
4,055	+		GFF6695	0.63	-1.0
4,056	-		GFF6695	0.64	-1.7
4,071	-		GFF6695	0.65	-0.5