Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6653 and GFF6654 are separated by 144 nucleotides GFF6654 and GFF6655 are separated by 18 nucleotides
GFF6653 - Aminotransferase, class III, at 26,606 to 27,940
GFF6653
GFF6654 - Transcriptional regulator, RpiR family, at 28,085 to 28,951
GFF6654
GFF6655 - Transcriptional regulator, GntR family, at 28,970 to 29,665
GFF6655
Position (kb) 28
29 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 27.243 kb on + strand, within GFF6653 at 27.243 kb on + strand, within GFF6653 at 27.243 kb on + strand, within GFF6653 at 27.243 kb on + strand, within GFF6653 at 27.243 kb on + strand, within GFF6653 at 27.243 kb on + strand, within GFF6653 at 27.243 kb on + strand, within GFF6653 at 27.244 kb on - strand, within GFF6653 at 27.244 kb on - strand, within GFF6653 at 27.244 kb on - strand, within GFF6653 at 27.244 kb on - strand, within GFF6653 at 27.276 kb on + strand, within GFF6653 at 27.276 kb on + strand, within GFF6653 at 27.277 kb on - strand, within GFF6653 at 27.403 kb on - strand, within GFF6653 at 27.444 kb on + strand, within GFF6653 at 27.445 kb on - strand, within GFF6653 at 27.445 kb on - strand, within GFF6653 at 27.445 kb on - strand, within GFF6653 at 27.546 kb on + strand, within GFF6653 at 27.546 kb on + strand, within GFF6653 at 27.546 kb on + strand, within GFF6653 at 27.546 kb on + strand, within GFF6653 at 27.546 kb on + strand, within GFF6653 at 27.547 kb on - strand, within GFF6653 at 27.547 kb on - strand, within GFF6653 at 27.547 kb on - strand, within GFF6653 at 27.547 kb on - strand, within GFF6653 at 27.603 kb on + strand, within GFF6653 at 27.603 kb on + strand, within GFF6653 at 27.603 kb on + strand, within GFF6653 at 27.604 kb on - strand, within GFF6653 at 27.604 kb on - strand, within GFF6653 at 27.604 kb on - strand, within GFF6653 at 27.660 kb on + strand, within GFF6653 at 27.660 kb on + strand, within GFF6653 at 27.660 kb on + strand, within GFF6653 at 27.660 kb on + strand, within GFF6653 at 27.660 kb on + strand, within GFF6653 at 27.660 kb on + strand, within GFF6653 at 27.660 kb on + strand, within GFF6653 at 27.660 kb on + strand, within GFF6653 at 27.660 kb on + strand, within GFF6653 at 27.660 kb on + strand, within GFF6653 at 27.661 kb on - strand, within GFF6653 at 27.661 kb on - strand, within GFF6653 at 27.661 kb on - strand, within GFF6653 at 27.661 kb on - strand, within GFF6653 at 27.661 kb on - strand, within GFF6653 at 27.661 kb on - strand, within GFF6653 at 27.750 kb on + strand, within GFF6653 at 27.750 kb on + strand, within GFF6653 at 27.750 kb on + strand, within GFF6653 at 27.750 kb on + strand, within GFF6653 at 27.750 kb on + strand, within GFF6653 at 27.750 kb on + strand, within GFF6653 at 27.751 kb on - strand, within GFF6653 at 27.751 kb on - strand, within GFF6653 at 27.751 kb on - strand, within GFF6653 at 27.751 kb on - strand, within GFF6653 at 27.846 kb on + strand at 27.847 kb on - strand at 27.847 kb on - strand at 27.873 kb on + strand at 27.873 kb on + strand at 27.873 kb on + strand at 27.873 kb on + strand at 27.873 kb on + strand at 27.873 kb on + strand at 27.873 kb on + strand at 27.873 kb on + strand at 27.873 kb on + strand at 27.873 kb on + strand at 27.873 kb on + strand at 27.873 kb on + strand at 27.873 kb on + strand at 27.873 kb on + strand at 27.873 kb on + strand at 27.873 kb on + strand at 27.873 kb on + strand at 27.873 kb on + strand at 27.873 kb on + strand at 27.873 kb on + strand at 27.874 kb on - strand at 27.874 kb on - strand at 27.874 kb on - strand at 27.874 kb on - strand at 27.874 kb on - strand at 27.874 kb on - strand at 27.874 kb on - strand at 27.874 kb on - strand at 27.874 kb on - strand at 27.874 kb on - strand at 27.874 kb on - strand at 27.874 kb on - strand at 27.874 kb on - strand at 27.874 kb on - strand at 27.874 kb on - strand at 27.874 kb on - strand at 27.874 kb on - strand at 27.874 kb on - strand at 27.874 kb on - strand at 27.874 kb on - strand at 27.874 kb on - strand at 27.874 kb on - strand at 27.874 kb on - strand at 27.874 kb on - strand at 27.874 kb on - strand at 27.874 kb on - strand at 28.154 kb on + strand at 28.154 kb on + strand at 28.154 kb on + strand at 28.155 kb on - strand at 28.155 kb on - strand at 28.155 kb on - strand at 28.155 kb on - strand at 28.155 kb on - strand at 28.155 kb on - strand at 28.325 kb on + strand, within GFF6654 at 28.325 kb on + strand, within GFF6654 at 28.325 kb on + strand, within GFF6654 at 28.325 kb on + strand, within GFF6654 at 28.326 kb on - strand, within GFF6654 at 28.326 kb on - strand, within GFF6654 at 28.326 kb on - strand, within GFF6654 at 28.326 kb on - strand, within GFF6654 at 28.326 kb on - strand, within GFF6654 at 28.326 kb on - strand, within GFF6654 at 28.326 kb on - strand, within GFF6654 at 28.326 kb on - strand, within GFF6654 at 28.326 kb on - strand, within GFF6654 at 28.326 kb on - strand, within GFF6654 at 28.326 kb on - strand, within GFF6654 at 28.326 kb on - strand, within GFF6654 at 28.326 kb on - strand, within GFF6654 at 28.464 kb on + strand, within GFF6654 at 28.465 kb on - strand, within GFF6654 at 28.465 kb on - strand, within GFF6654 at 28.465 kb on - strand, within GFF6654 at 28.532 kb on + strand, within GFF6654 at 28.532 kb on + strand, within GFF6654 at 28.532 kb on + strand, within GFF6654 at 28.532 kb on + strand, within GFF6654 at 28.532 kb on + strand, within GFF6654 at 28.532 kb on + strand, within GFF6654 at 28.532 kb on + strand, within GFF6654 at 28.532 kb on + strand, within GFF6654 at 28.532 kb on + strand, within GFF6654 at 28.532 kb on + strand, within GFF6654 at 28.532 kb on + strand, within GFF6654 at 28.532 kb on + strand, within GFF6654 at 28.532 kb on + strand, within GFF6654 at 28.533 kb on - strand, within GFF6654 at 28.533 kb on - strand, within GFF6654 at 28.533 kb on - strand, within GFF6654 at 28.533 kb on - strand, within GFF6654 at 28.533 kb on - strand, within GFF6654 at 28.533 kb on - strand, within GFF6654 at 28.533 kb on - strand, within GFF6654 at 28.533 kb on - strand, within GFF6654 at 28.533 kb on - strand, within GFF6654 at 28.533 kb on - strand, within GFF6654 at 28.538 kb on + strand, within GFF6654 at 28.538 kb on + strand, within GFF6654 at 28.538 kb on + strand, within GFF6654 at 28.539 kb on - strand, within GFF6654 at 28.539 kb on - strand, within GFF6654 at 28.919 kb on + strand at 28.919 kb on + strand at 28.919 kb on + strand at 28.919 kb on + strand at 28.919 kb on + strand at 28.919 kb on + strand at 28.919 kb on + strand at 28.919 kb on + strand at 28.920 kb on - strand at 28.920 kb on - strand at 28.920 kb on - strand at 28.920 kb on - strand at 28.920 kb on - strand at 28.920 kb on - strand at 28.920 kb on - strand at 28.920 kb on - strand at 28.920 kb on - strand at 28.920 kb on - strand at 28.920 kb on - strand at 29.145 kb on + strand, within GFF6655 at 29.145 kb on + strand, within GFF6655 at 29.145 kb on + strand, within GFF6655 at 29.145 kb on + strand, within GFF6655 at 29.145 kb on + strand, within GFF6655 at 29.145 kb on + strand, within GFF6655 at 29.145 kb on + strand, within GFF6655 at 29.146 kb on - strand, within GFF6655 at 29.146 kb on - strand, within GFF6655 at 29.146 kb on - strand, within GFF6655 at 29.146 kb on - strand, within GFF6655 at 29.300 kb on + strand, within GFF6655 at 29.300 kb on + strand, within GFF6655 at 29.301 kb on - strand, within GFF6655 at 29.301 kb on - strand, within GFF6655 at 29.301 kb on - strand, within GFF6655 at 29.508 kb on + strand, within GFF6655 at 29.508 kb on + strand, within GFF6655 at 29.508 kb on + strand, within GFF6655 at 29.508 kb on + strand, within GFF6655 at 29.508 kb on + strand, within GFF6655 at 29.509 kb on - strand, within GFF6655 at 29.509 kb on - strand, within GFF6655 at 29.509 kb on - strand, within GFF6655 at 29.509 kb on - strand, within GFF6655 at 29.509 kb on - strand, within GFF6655 at 29.509 kb on - strand, within GFF6655 at 29.509 kb on - strand, within GFF6655 at 29.509 kb on - strand, within GFF6655 at 29.509 kb on - strand, within GFF6655 at 29.650 kb on + strand at 29.650 kb on + strand at 29.651 kb on - strand at 29.651 kb on - strand at 29.651 kb on - strand at 29.744 kb on + strand at 29.744 kb on + strand at 29.745 kb on - strand at 29.745 kb on - strand at 29.768 kb on - strand at 29.813 kb on + strand at 29.813 kb on + strand at 29.813 kb on + strand at 29.814 kb on - strand at 29.814 kb on - strand at 29.814 kb on - strand at 29.814 kb on - strand at 29.814 kb on - strand at 29.814 kb on - strand at 29.861 kb on + strand at 29.861 kb on + strand at 29.861 kb on + strand at 29.861 kb on + strand at 29.861 kb on + strand at 29.861 kb on + strand at 29.861 kb on + strand at 29.861 kb on + strand at 29.861 kb on + strand at 29.861 kb on + strand at 29.861 kb on + strand at 29.861 kb on + strand at 29.861 kb on + strand at 29.861 kb on + strand at 29.861 kb on + strand at 29.861 kb on + strand at 29.862 kb on - strand at 29.862 kb on - strand at 29.862 kb on - strand at 29.862 kb on - strand at 29.862 kb on - strand at 29.862 kb on - strand at 29.862 kb on - strand at 29.862 kb on - strand at 29.862 kb on - strand at 29.862 kb on - strand at 29.862 kb on - strand at 29.862 kb on - strand at 29.862 kb on - strand at 29.862 kb on - strand at 29.862 kb on - strand at 29.862 kb on - strand at 29.862 kb on - strand at 29.862 kb on - strand at 29.862 kb on - strand at 29.878 kb on + strand at 29.878 kb on + strand at 29.878 kb on + strand at 29.878 kb on + strand at 29.878 kb on + strand at 29.878 kb on + strand at 29.878 kb on + strand at 29.879 kb on - strand at 29.879 kb on - strand at 29.879 kb on - strand at 29.879 kb on - strand at 29.881 kb on + strand at 29.881 kb on + strand at 29.881 kb on + strand at 29.881 kb on + strand at 29.881 kb on + strand at 29.881 kb on + strand at 29.881 kb on + strand at 29.881 kb on + strand at 29.881 kb on + strand at 29.881 kb on + strand at 29.881 kb on + strand at 29.881 kb on + strand at 29.881 kb on + strand at 29.881 kb on + strand at 29.881 kb on + strand at 29.881 kb on + strand at 29.881 kb on + strand at 29.881 kb on + strand at 29.881 kb on + strand at 29.881 kb on + strand at 29.882 kb on - strand at 29.882 kb on - strand at 29.882 kb on - strand at 29.882 kb on - strand at 29.882 kb on - strand at 29.882 kb on - strand at 29.882 kb on - strand at 29.882 kb on - strand at 29.882 kb on - strand at 29.882 kb on - strand at 29.882 kb on - strand at 29.882 kb on - strand at 29.882 kb on - strand at 29.907 kb on + strand at 29.908 kb on - strand at 29.933 kb on + strand at 29.933 kb on + strand at 29.933 kb on + strand at 29.934 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 27,243 + GFF6653 0.48 +0.0 27,243 + GFF6653 0.48 +0.4 27,243 + GFF6653 0.48 -0.2 27,243 + GFF6653 0.48 +0.1 27,243 + GFF6653 0.48 -0.1 27,243 + GFF6653 0.48 -0.5 27,243 + GFF6653 0.48 -2.0 27,244 - GFF6653 0.48 -0.2 27,244 - GFF6653 0.48 +0.1 27,244 - GFF6653 0.48 +1.4 27,244 - GFF6653 0.48 +0.2 27,276 + GFF6653 0.50 -0.5 27,276 + GFF6653 0.50 -0.5 27,277 - GFF6653 0.50 +0.1 27,403 - GFF6653 0.60 -0.9 27,444 + GFF6653 0.63 -0.3 27,445 - GFF6653 0.63 -1.4 27,445 - GFF6653 0.63 -0.5 27,445 - GFF6653 0.63 -1.6 27,546 + GFF6653 0.70 -1.9 27,546 + GFF6653 0.70 -0.1 27,546 + GFF6653 0.70 -0.1 27,546 + GFF6653 0.70 -0.4 27,546 + GFF6653 0.70 -0.4 27,547 - GFF6653 0.70 -0.5 27,547 - GFF6653 0.70 -0.2 27,547 - GFF6653 0.70 -0.2 27,547 - GFF6653 0.70 +0.9 27,603 + GFF6653 0.75 -0.6 27,603 + GFF6653 0.75 +0.5 27,603 + GFF6653 0.75 +0.9 27,604 - GFF6653 0.75 -0.2 27,604 - GFF6653 0.75 -2.3 27,604 - GFF6653 0.75 +0.3 27,660 + GFF6653 0.79 +1.6 27,660 + GFF6653 0.79 -1.1 27,660 + GFF6653 0.79 +0.0 27,660 + GFF6653 0.79 -1.9 27,660 + GFF6653 0.79 -0.7 27,660 + GFF6653 0.79 -0.0 27,660 + GFF6653 0.79 +0.4 27,660 + GFF6653 0.79 -0.2 27,660 + GFF6653 0.79 -0.6 27,660 + GFF6653 0.79 -0.7 27,661 - GFF6653 0.79 -1.6 27,661 - GFF6653 0.79 -0.1 27,661 - GFF6653 0.79 -0.4 27,661 - GFF6653 0.79 -0.2 27,661 - GFF6653 0.79 -0.7 27,661 - GFF6653 0.79 -0.4 27,750 + GFF6653 0.86 -0.5 27,750 + GFF6653 0.86 -0.5 27,750 + GFF6653 0.86 -0.3 27,750 + GFF6653 0.86 +1.8 27,750 + GFF6653 0.86 +1.6 27,750 + GFF6653 0.86 -2.3 27,751 - GFF6653 0.86 +0.0 27,751 - GFF6653 0.86 -0.5 27,751 - GFF6653 0.86 -0.1 27,751 - GFF6653 0.86 +0.4 27,846 + -0.8 27,847 - -1.1 27,847 - +0.2 27,873 + +0.7 27,873 + -0.6 27,873 + +0.8 27,873 + +0.5 27,873 + +0.4 27,873 + -0.8 27,873 + -2.2 27,873 + -0.5 27,873 + +0.1 27,873 + +0.6 27,873 + -0.1 27,873 + -1.6 27,873 + -0.5 27,873 + -0.1 27,873 + +0.8 27,873 + +0.1 27,873 + +0.2 27,873 + -1.1 27,873 + +0.1 27,873 + +0.7 27,874 - -0.5 27,874 - -0.2 27,874 - -0.6 27,874 - +1.7 27,874 - +0.4 27,874 - -0.0 27,874 - +0.4 27,874 - -0.2 27,874 - +0.6 27,874 - +2.4 27,874 - -0.6 27,874 - -0.2 27,874 - +0.1 27,874 - -1.2 27,874 - +0.4 27,874 - +0.9 27,874 - +0.0 27,874 - -1.1 27,874 - -0.4 27,874 - -0.1 27,874 - -0.8 27,874 - -1.0 27,874 - -0.5 27,874 - -1.0 27,874 - -0.7 27,874 - -1.0 28,154 + -0.4 28,154 + -1.1 28,154 + -0.2 28,155 - -1.1 28,155 - +1.4 28,155 - -0.3 28,155 - -1.8 28,155 - +0.4 28,155 - -0.6 28,325 + GFF6654 0.28 +2.4 28,325 + GFF6654 0.28 -0.7 28,325 + GFF6654 0.28 -1.4 28,325 + GFF6654 0.28 -0.9 28,326 - GFF6654 0.28 -0.3 28,326 - GFF6654 0.28 +0.0 28,326 - GFF6654 0.28 +0.0 28,326 - GFF6654 0.28 -1.0 28,326 - GFF6654 0.28 -0.2 28,326 - GFF6654 0.28 +0.3 28,326 - GFF6654 0.28 -0.5 28,326 - GFF6654 0.28 +0.2 28,326 - GFF6654 0.28 +0.3 28,326 - GFF6654 0.28 -0.8 28,326 - GFF6654 0.28 -0.5 28,326 - GFF6654 0.28 -1.8 28,326 - GFF6654 0.28 -1.3 28,464 + GFF6654 0.44 -0.6 28,465 - GFF6654 0.44 -0.5 28,465 - GFF6654 0.44 -1.0 28,465 - GFF6654 0.44 -1.2 28,532 + GFF6654 0.52 -0.6 28,532 + GFF6654 0.52 -1.1 28,532 + GFF6654 0.52 +0.7 28,532 + GFF6654 0.52 -1.0 28,532 + GFF6654 0.52 +0.6 28,532 + GFF6654 0.52 +1.4 28,532 + GFF6654 0.52 -0.2 28,532 + GFF6654 0.52 -1.6 28,532 + GFF6654 0.52 -0.7 28,532 + GFF6654 0.52 -3.3 28,532 + GFF6654 0.52 -0.3 28,532 + GFF6654 0.52 +0.0 28,532 + GFF6654 0.52 -1.2 28,533 - GFF6654 0.52 -0.5 28,533 - GFF6654 0.52 -0.4 28,533 - GFF6654 0.52 -0.2 28,533 - GFF6654 0.52 -0.6 28,533 - GFF6654 0.52 +0.1 28,533 - GFF6654 0.52 +0.4 28,533 - GFF6654 0.52 +0.8 28,533 - GFF6654 0.52 +1.0 28,533 - GFF6654 0.52 -0.4 28,533 - GFF6654 0.52 +0.4 28,538 + GFF6654 0.52 +0.5 28,538 + GFF6654 0.52 -0.4 28,538 + GFF6654 0.52 +1.4 28,539 - GFF6654 0.52 -1.1 28,539 - GFF6654 0.52 -1.2 28,919 + -0.7 28,919 + -0.1 28,919 + -1.0 28,919 + +2.4 28,919 + -0.1 28,919 + -0.4 28,919 + +1.0 28,919 + +0.8 28,920 - +2.4 28,920 - -0.8 28,920 - -0.1 28,920 - -0.1 28,920 - -0.7 28,920 - +0.0 28,920 - -1.1 28,920 - -0.2 28,920 - -0.2 28,920 - +0.5 28,920 - -0.4 29,145 + GFF6655 0.25 -0.9 29,145 + GFF6655 0.25 -0.2 29,145 + GFF6655 0.25 +1.6 29,145 + GFF6655 0.25 +0.4 29,145 + GFF6655 0.25 -1.3 29,145 + GFF6655 0.25 -1.2 29,145 + GFF6655 0.25 +0.7 29,146 - GFF6655 0.25 +0.6 29,146 - GFF6655 0.25 -0.5 29,146 - GFF6655 0.25 +0.6 29,146 - GFF6655 0.25 -1.4 29,300 + GFF6655 0.47 -0.2 29,300 + GFF6655 0.47 -0.5 29,301 - GFF6655 0.48 +0.2 29,301 - GFF6655 0.48 -0.1 29,301 - GFF6655 0.48 -0.1 29,508 + GFF6655 0.77 -0.5 29,508 + GFF6655 0.77 -0.8 29,508 + GFF6655 0.77 +0.1 29,508 + GFF6655 0.77 -0.1 29,508 + GFF6655 0.77 -0.5 29,509 - GFF6655 0.77 +0.8 29,509 - GFF6655 0.77 -0.2 29,509 - GFF6655 0.77 +0.1 29,509 - GFF6655 0.77 +0.5 29,509 - GFF6655 0.77 +0.8 29,509 - GFF6655 0.77 -0.3 29,509 - GFF6655 0.77 +2.4 29,509 - GFF6655 0.77 +0.8 29,509 - GFF6655 0.77 -1.0 29,650 + +0.1 29,650 + +0.1 29,651 - -0.1 29,651 - -0.2 29,651 - -0.8 29,744 + -0.2 29,744 + +0.8 29,745 - -0.8 29,745 - -0.0 29,768 - -0.4 29,813 + +0.2 29,813 + -1.8 29,813 + -1.5 29,814 - +0.0 29,814 - -0.4 29,814 - -0.6 29,814 - -0.3 29,814 - -0.2 29,814 - +0.5 29,861 + +0.9 29,861 + -1.1 29,861 + -1.0 29,861 + +0.3 29,861 + +2.1 29,861 + -0.7 29,861 + -0.3 29,861 + +0.5 29,861 + -1.0 29,861 + +0.2 29,861 + -0.5 29,861 + -0.0 29,861 + -0.8 29,861 + -0.2 29,861 + +0.1 29,861 + -0.1 29,862 - -1.0 29,862 - -1.2 29,862 - +0.0 29,862 - +0.5 29,862 - +1.1 29,862 - +0.2 29,862 - -0.2 29,862 - -0.4 29,862 - -0.4 29,862 - -1.0 29,862 - -0.8 29,862 - +1.7 29,862 - +0.6 29,862 - -1.2 29,862 - +0.8 29,862 - -0.4 29,862 - +0.2 29,862 - +0.0 29,862 - -0.1 29,878 + -0.8 29,878 + +1.4 29,878 + -1.0 29,878 + +0.3 29,878 + +0.0 29,878 + +0.4 29,878 + -0.1 29,879 - +0.0 29,879 - +0.4 29,879 - -1.1 29,879 - +0.2 29,881 + +0.4 29,881 + +0.3 29,881 + -0.0 29,881 + -0.9 29,881 + +0.8 29,881 + -0.6 29,881 + +0.0 29,881 + +0.2 29,881 + +0.2 29,881 + -0.4 29,881 + +0.0 29,881 + +0.2 29,881 + +0.4 29,881 + -0.3 29,881 + +0.4 29,881 + -0.0 29,881 + +0.4 29,881 + -0.4 29,881 + -0.3 29,881 + +1.8 29,882 - -0.4 29,882 - +0.4 29,882 - -0.5 29,882 - -0.4 29,882 - +0.5 29,882 - -0.3 29,882 - -0.1 29,882 - +0.0 29,882 - +1.5 29,882 - +0.1 29,882 - -0.4 29,882 - -0.9 29,882 - +0.1 29,907 + +0.9 29,908 - +0.9 29,933 + +0.9 29,933 + +0.6 29,933 + -0.8 29,934 - -0.0
Or see this region's nucleotide sequence