Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6613 and GFF6614 are separated by 6 nucleotides GFF6614 and GFF6615 are separated by 654 nucleotides
GFF6613 - no description, at 56,522 to 57,067
GFF6613
GFF6614 - hypothetical protein, at 57,074 to 57,715
GFF6614
GFF6615 - putative plasmid stabilization protein, at 58,370 to 60,397
GFF6615
Position (kb) 57
58 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 56.074 kb on - strand at 56.233 kb on + strand at 56.234 kb on - strand at 56.234 kb on - strand at 56.292 kb on + strand at 56.292 kb on + strand at 56.292 kb on + strand at 56.292 kb on + strand at 56.293 kb on - strand at 56.404 kb on - strand at 56.404 kb on - strand at 56.404 kb on - strand at 56.469 kb on + strand at 56.469 kb on + strand at 56.495 kb on + strand at 56.495 kb on + strand at 56.495 kb on + strand at 56.495 kb on + strand at 56.496 kb on - strand at 56.496 kb on - strand at 56.496 kb on - strand at 56.496 kb on - strand at 56.528 kb on + strand at 56.536 kb on + strand at 56.536 kb on + strand at 56.536 kb on + strand at 56.537 kb on - strand at 56.537 kb on - strand at 56.537 kb on - strand at 56.537 kb on - strand at 56.537 kb on - strand at 56.567 kb on + strand at 56.567 kb on + strand at 56.568 kb on - strand at 56.568 kb on - strand at 56.568 kb on - strand at 56.671 kb on + strand, within GFF6613 at 56.687 kb on + strand, within GFF6613 at 56.687 kb on + strand, within GFF6613 at 56.687 kb on + strand, within GFF6613 at 56.687 kb on + strand, within GFF6613 at 56.687 kb on + strand, within GFF6613 at 56.687 kb on + strand, within GFF6613 at 56.687 kb on + strand, within GFF6613 at 56.687 kb on + strand, within GFF6613 at 56.687 kb on + strand, within GFF6613 at 56.687 kb on + strand, within GFF6613 at 56.687 kb on + strand, within GFF6613 at 56.687 kb on + strand, within GFF6613 at 56.687 kb on + strand, within GFF6613 at 56.687 kb on + strand, within GFF6613 at 56.687 kb on + strand, within GFF6613 at 56.687 kb on + strand, within GFF6613 at 56.688 kb on - strand, within GFF6613 at 56.688 kb on - strand, within GFF6613 at 56.688 kb on - strand, within GFF6613 at 56.688 kb on - strand, within GFF6613 at 56.688 kb on - strand, within GFF6613 at 56.688 kb on - strand, within GFF6613 at 56.693 kb on + strand, within GFF6613 at 56.693 kb on + strand, within GFF6613 at 56.694 kb on - strand, within GFF6613 at 56.715 kb on + strand, within GFF6613 at 56.715 kb on + strand, within GFF6613 at 56.716 kb on - strand, within GFF6613 at 56.716 kb on - strand, within GFF6613 at 56.716 kb on - strand, within GFF6613 at 56.768 kb on + strand, within GFF6613 at 56.769 kb on - strand, within GFF6613 at 56.898 kb on - strand, within GFF6613 at 56.898 kb on - strand, within GFF6613 at 56.898 kb on - strand, within GFF6613 at 56.898 kb on - strand, within GFF6613 at 56.898 kb on - strand, within GFF6613 at 56.975 kb on + strand, within GFF6613 at 56.975 kb on + strand, within GFF6613 at 56.975 kb on + strand, within GFF6613 at 56.975 kb on + strand, within GFF6613 at 56.976 kb on - strand, within GFF6613 at 56.976 kb on - strand, within GFF6613 at 56.976 kb on - strand, within GFF6613 at 57.008 kb on + strand, within GFF6613 at 57.250 kb on + strand, within GFF6614 at 57.251 kb on - strand, within GFF6614 at 57.258 kb on + strand, within GFF6614 at 57.259 kb on - strand, within GFF6614 at 57.259 kb on - strand, within GFF6614 at 57.330 kb on + strand, within GFF6614 at 57.331 kb on + strand, within GFF6614 at 57.379 kb on + strand, within GFF6614 at 57.379 kb on + strand, within GFF6614 at 57.380 kb on - strand, within GFF6614 at 57.381 kb on + strand, within GFF6614 at 57.382 kb on - strand, within GFF6614 at 57.382 kb on - strand, within GFF6614 at 57.382 kb on - strand, within GFF6614 at 57.393 kb on + strand, within GFF6614 at 57.393 kb on + strand, within GFF6614 at 57.393 kb on + strand, within GFF6614 at 57.394 kb on - strand, within GFF6614 at 57.394 kb on - strand, within GFF6614 at 57.394 kb on - strand, within GFF6614 at 57.394 kb on - strand, within GFF6614 at 57.531 kb on - strand, within GFF6614 at 57.621 kb on + strand, within GFF6614 at 57.622 kb on - strand, within GFF6614 at 57.711 kb on + strand at 57.711 kb on + strand at 57.712 kb on - strand at 57.712 kb on - strand at 57.732 kb on + strand at 57.732 kb on + strand at 57.732 kb on + strand at 57.732 kb on + strand at 57.733 kb on - strand at 57.733 kb on - strand at 57.733 kb on - strand at 57.733 kb on - strand at 57.733 kb on - strand at 57.733 kb on - strand at 57.733 kb on - strand at 57.733 kb on - strand at 57.733 kb on - strand at 57.734 kb on + strand at 57.734 kb on + strand at 57.734 kb on + strand at 57.734 kb on + strand at 57.735 kb on - strand at 57.735 kb on - strand at 57.735 kb on - strand at 57.839 kb on + strand at 57.839 kb on + strand at 57.839 kb on + strand at 57.839 kb on + strand at 57.840 kb on - strand at 57.840 kb on - strand at 57.926 kb on + strand at 57.926 kb on + strand at 57.926 kb on + strand at 57.926 kb on + strand at 57.927 kb on - strand at 57.930 kb on + strand at 57.930 kb on + strand at 57.931 kb on - strand at 58.259 kb on + strand at 58.259 kb on + strand at 58.260 kb on - strand at 58.260 kb on - strand at 58.260 kb on - strand at 58.611 kb on + strand, within GFF6615 at 58.611 kb on + strand, within GFF6615 at 58.655 kb on + strand, within GFF6615 at 58.656 kb on - strand, within GFF6615
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 56,074 - +0.5 56,233 + -0.4 56,234 - +0.1 56,234 - +0.6 56,292 + +1.0 56,292 + +0.6 56,292 + +0.3 56,292 + -1.8 56,293 - +0.1 56,404 - +0.2 56,404 - -0.8 56,404 - -0.7 56,469 + +1.0 56,469 + +0.1 56,495 + +0.3 56,495 + +1.4 56,495 + +1.0 56,495 + +1.4 56,496 - +0.5 56,496 - -0.1 56,496 - +0.1 56,496 - -0.1 56,528 + -0.4 56,536 + -3.1 56,536 + -0.0 56,536 + +0.8 56,537 - +0.1 56,537 - +0.1 56,537 - -0.4 56,537 - +0.3 56,537 - -1.2 56,567 + -0.5 56,567 + -0.2 56,568 - +0.2 56,568 - +0.0 56,568 - -0.2 56,671 + GFF6613 0.27 +0.6 56,687 + GFF6613 0.30 -0.8 56,687 + GFF6613 0.30 -1.2 56,687 + GFF6613 0.30 -0.2 56,687 + GFF6613 0.30 -1.2 56,687 + GFF6613 0.30 +2.4 56,687 + GFF6613 0.30 +0.1 56,687 + GFF6613 0.30 +0.5 56,687 + GFF6613 0.30 +1.6 56,687 + GFF6613 0.30 -0.3 56,687 + GFF6613 0.30 -0.4 56,687 + GFF6613 0.30 +0.8 56,687 + GFF6613 0.30 +0.2 56,687 + GFF6613 0.30 -0.1 56,687 + GFF6613 0.30 -0.0 56,687 + GFF6613 0.30 -1.0 56,687 + GFF6613 0.30 +0.5 56,688 - GFF6613 0.30 +0.2 56,688 - GFF6613 0.30 -0.0 56,688 - GFF6613 0.30 +1.0 56,688 - GFF6613 0.30 +0.4 56,688 - GFF6613 0.30 -0.1 56,688 - GFF6613 0.30 -0.6 56,693 + GFF6613 0.31 -0.6 56,693 + GFF6613 0.31 -0.4 56,694 - GFF6613 0.32 +0.1 56,715 + GFF6613 0.35 -0.2 56,715 + GFF6613 0.35 -0.0 56,716 - GFF6613 0.36 -0.7 56,716 - GFF6613 0.36 -0.2 56,716 - GFF6613 0.36 -0.6 56,768 + GFF6613 0.45 -0.8 56,769 - GFF6613 0.45 -1.2 56,898 - GFF6613 0.69 +0.1 56,898 - GFF6613 0.69 +0.4 56,898 - GFF6613 0.69 +0.1 56,898 - GFF6613 0.69 +0.2 56,898 - GFF6613 0.69 -1.3 56,975 + GFF6613 0.83 -1.6 56,975 + GFF6613 0.83 +2.1 56,975 + GFF6613 0.83 -1.6 56,975 + GFF6613 0.83 +0.6 56,976 - GFF6613 0.83 -0.1 56,976 - GFF6613 0.83 -1.8 56,976 - GFF6613 0.83 -0.5 57,008 + GFF6613 0.89 -0.2 57,250 + GFF6614 0.27 +1.2 57,251 - GFF6614 0.28 +0.3 57,258 + GFF6614 0.29 -0.8 57,259 - GFF6614 0.29 -1.3 57,259 - GFF6614 0.29 +0.5 57,330 + GFF6614 0.40 -1.4 57,331 + GFF6614 0.40 -0.5 57,379 + GFF6614 0.48 +0.4 57,379 + GFF6614 0.48 -1.2 57,380 - GFF6614 0.48 -1.2 57,381 + GFF6614 0.48 +0.6 57,382 - GFF6614 0.48 -0.4 57,382 - GFF6614 0.48 +0.8 57,382 - GFF6614 0.48 -0.5 57,393 + GFF6614 0.50 -0.6 57,393 + GFF6614 0.50 -0.7 57,393 + GFF6614 0.50 -0.4 57,394 - GFF6614 0.50 -0.4 57,394 - GFF6614 0.50 -1.5 57,394 - GFF6614 0.50 -0.1 57,394 - GFF6614 0.50 -1.4 57,531 - GFF6614 0.71 -1.0 57,621 + GFF6614 0.85 -0.9 57,622 - GFF6614 0.85 +1.4 57,711 + -0.5 57,711 + +0.2 57,712 - -1.0 57,712 - -0.6 57,732 + +0.5 57,732 + -1.4 57,732 + +1.7 57,732 + -1.7 57,733 - +1.6 57,733 - -0.0 57,733 - -0.5 57,733 - -0.6 57,733 - -0.6 57,733 - -0.0 57,733 - -0.0 57,733 - -0.3 57,733 - -0.6 57,734 + -1.7 57,734 + -0.8 57,734 + -0.1 57,734 + +0.0 57,735 - +0.1 57,735 - +0.2 57,735 - +0.1 57,839 + +0.5 57,839 + -0.3 57,839 + -0.3 57,839 + -0.3 57,840 - -0.4 57,840 - -0.6 57,926 + -1.9 57,926 + +0.2 57,926 + -0.3 57,926 + -0.2 57,927 - -0.4 57,930 + -0.4 57,930 + +0.1 57,931 - -0.2 58,259 + -0.3 58,259 + +0.0 58,260 - -0.3 58,260 - -0.1 58,260 - +0.2 58,611 + GFF6615 0.12 -0.1 58,611 + GFF6615 0.12 -1.0 58,655 + GFF6615 0.14 +1.0 58,656 - GFF6615 0.14 -0.6
Or see this region's nucleotide sequence