Strain Fitness in Variovorax sp. SCN45 around GFF6592

Experiment: Community=Locust bean gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6590 and GFF6591 are separated by 45 nucleotidesGFF6591 and GFF6592 are separated by 58 nucleotidesGFF6592 and GFF6593 overlap by 11 nucleotides GFF6590 - Niacin transporter NiaP, at 33,439 to 34,755 GFF6590 GFF6591 - Transcriptional regulator, GntR family, at 34,801 to 35,547 GFF6591 GFF6592 - hypothetical protein, at 35,606 to 36,322 GFF6592 GFF6593 - Alcohol dehydrogenase (EC 1.1.1.1), at 36,312 to 37,580 GFF6593 Position (kb) 35 36 37Strain fitness (log2 ratio) -2 -1 0 1at 34.612 kb on + strand, within GFF6590at 34.612 kb on + strand, within GFF6590at 34.612 kb on + strand, within GFF6590at 34.612 kb on + strand, within GFF6590at 34.612 kb on + strand, within GFF6590at 34.613 kb on - strand, within GFF6590at 34.613 kb on - strand, within GFF6590at 34.613 kb on - strand, within GFF6590at 34.802 kb on + strandat 34.832 kb on + strandat 34.833 kb on - strandat 34.959 kb on - strand, within GFF6591at 34.967 kb on + strand, within GFF6591at 34.968 kb on - strand, within GFF6591at 35.230 kb on + strand, within GFF6591at 35.230 kb on + strand, within GFF6591at 35.231 kb on - strand, within GFF6591at 35.231 kb on - strand, within GFF6591at 35.231 kb on - strand, within GFF6591at 35.382 kb on + strand, within GFF6591at 35.554 kb on + strandat 35.585 kb on + strandat 35.585 kb on + strandat 35.591 kb on - strandat 35.593 kb on + strandat 35.593 kb on + strandat 35.594 kb on - strandat 35.615 kb on - strandat 35.615 kb on - strandat 35.780 kb on + strand, within GFF6592at 35.796 kb on - strand, within GFF6592at 35.796 kb on - strand, within GFF6592at 35.891 kb on + strand, within GFF6592at 35.891 kb on + strand, within GFF6592at 35.891 kb on + strand, within GFF6592at 36.289 kb on - strandat 36.309 kb on - strandat 36.474 kb on + strand, within GFF6593at 36.706 kb on + strand, within GFF6593at 36.706 kb on + strand, within GFF6593at 36.706 kb on + strand, within GFF6593at 36.706 kb on + strand, within GFF6593at 36.706 kb on + strand, within GFF6593at 36.706 kb on + strand, within GFF6593at 36.706 kb on + strand, within GFF6593at 36.706 kb on + strand, within GFF6593at 36.706 kb on + strand, within GFF6593at 36.706 kb on + strand, within GFF6593at 36.706 kb on + strand, within GFF6593at 36.706 kb on + strand, within GFF6593at 36.706 kb on + strand, within GFF6593at 36.707 kb on - strand, within GFF6593at 36.707 kb on - strand, within GFF6593at 36.707 kb on - strand, within GFF6593at 36.707 kb on - strand, within GFF6593at 36.707 kb on - strand, within GFF6593at 36.707 kb on - strand, within GFF6593at 36.707 kb on - strand, within GFF6593at 36.707 kb on - strand, within GFF6593at 36.707 kb on - strand, within GFF6593at 36.707 kb on - strand, within GFF6593at 36.707 kb on - strand, within GFF6593at 36.707 kb on - strand, within GFF6593at 36.707 kb on - strand, within GFF6593at 36.707 kb on - strand, within GFF6593at 36.707 kb on - strand, within GFF6593at 36.707 kb on - strand, within GFF6593at 36.707 kb on - strand, within GFF6593at 36.707 kb on - strand, within GFF6593at 36.873 kb on + strand, within GFF6593at 36.873 kb on + strand, within GFF6593at 36.873 kb on + strand, within GFF6593at 36.873 kb on + strand, within GFF6593at 36.873 kb on + strand, within GFF6593at 36.874 kb on - strand, within GFF6593at 36.874 kb on - strand, within GFF6593at 36.874 kb on - strand, within GFF6593at 36.963 kb on + strand, within GFF6593at 36.964 kb on - strand, within GFF6593at 36.964 kb on - strand, within GFF6593at 36.994 kb on - strand, within GFF6593at 36.994 kb on - strand, within GFF6593at 36.996 kb on - strand, within GFF6593at 37.071 kb on + strand, within GFF6593at 37.071 kb on + strand, within GFF6593at 37.113 kb on + strand, within GFF6593at 37.179 kb on + strand, within GFF6593at 37.180 kb on - strand, within GFF6593at 37.180 kb on - strand, within GFF6593at 37.180 kb on - strand, within GFF6593at 37.239 kb on + strand, within GFF6593at 37.240 kb on - strand, within GFF6593at 37.240 kb on - strand, within GFF6593

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1
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34,612 + GFF6590 0.89 -0.4
34,612 + GFF6590 0.89 -2.2
34,612 + GFF6590 0.89 -0.7
34,612 + GFF6590 0.89 -1.2
34,612 + GFF6590 0.89 +0.2
34,613 - GFF6590 0.89 -0.2
34,613 - GFF6590 0.89 +0.2
34,613 - GFF6590 0.89 +0.3
34,802 + -0.1
34,832 + +0.2
34,833 - -0.5
34,959 - GFF6591 0.21 -0.6
34,967 + GFF6591 0.22 -0.7
34,968 - GFF6591 0.22 +0.1
35,230 + GFF6591 0.57 -0.8
35,230 + GFF6591 0.57 -0.5
35,231 - GFF6591 0.58 +0.6
35,231 - GFF6591 0.58 -0.9
35,231 - GFF6591 0.58 -0.5
35,382 + GFF6591 0.78 -1.1
35,554 + -0.9
35,585 + -0.8
35,585 + -0.2
35,591 - -0.5
35,593 + -0.7
35,593 + -0.8
35,594 - -0.5
35,615 - -2.2
35,615 - -0.2
35,780 + GFF6592 0.24 +0.4
35,796 - GFF6592 0.26 +1.0
35,796 - GFF6592 0.26 -0.0
35,891 + GFF6592 0.40 +1.1
35,891 + GFF6592 0.40 +0.4
35,891 + GFF6592 0.40 +0.1
36,289 - +0.3
36,309 - +1.4
36,474 + GFF6593 0.13 -0.2
36,706 + GFF6593 0.31 +0.3
36,706 + GFF6593 0.31 +0.6
36,706 + GFF6593 0.31 +1.1
36,706 + GFF6593 0.31 +1.4
36,706 + GFF6593 0.31 +0.3
36,706 + GFF6593 0.31 -0.2
36,706 + GFF6593 0.31 +0.1
36,706 + GFF6593 0.31 -1.2
36,706 + GFF6593 0.31 -1.2
36,706 + GFF6593 0.31 -0.1
36,706 + GFF6593 0.31 +0.5
36,706 + GFF6593 0.31 -0.2
36,706 + GFF6593 0.31 +0.1
36,707 - GFF6593 0.31 +1.4
36,707 - GFF6593 0.31 -0.2
36,707 - GFF6593 0.31 +0.4
36,707 - GFF6593 0.31 -0.4
36,707 - GFF6593 0.31 +0.3
36,707 - GFF6593 0.31 +0.4
36,707 - GFF6593 0.31 +0.2
36,707 - GFF6593 0.31 -0.3
36,707 - GFF6593 0.31 -0.0
36,707 - GFF6593 0.31 -1.2
36,707 - GFF6593 0.31 +0.3
36,707 - GFF6593 0.31 -0.0
36,707 - GFF6593 0.31 +0.6
36,707 - GFF6593 0.31 +0.4
36,707 - GFF6593 0.31 +0.1
36,707 - GFF6593 0.31 +0.4
36,707 - GFF6593 0.31 -1.0
36,707 - GFF6593 0.31 +0.1
36,873 + GFF6593 0.44 +0.7
36,873 + GFF6593 0.44 +0.1
36,873 + GFF6593 0.44 -0.0
36,873 + GFF6593 0.44 -0.8
36,873 + GFF6593 0.44 +0.1
36,874 - GFF6593 0.44 -0.7
36,874 - GFF6593 0.44 -0.2
36,874 - GFF6593 0.44 +0.4
36,963 + GFF6593 0.51 +1.0
36,964 - GFF6593 0.51 -0.7
36,964 - GFF6593 0.51 -0.4
36,994 - GFF6593 0.54 +0.2
36,994 - GFF6593 0.54 -0.5
36,996 - GFF6593 0.54 -0.3
37,071 + GFF6593 0.60 -0.5
37,071 + GFF6593 0.60 -1.6
37,113 + GFF6593 0.63 +1.2
37,179 + GFF6593 0.68 -1.2
37,180 - GFF6593 0.68 -2.3
37,180 - GFF6593 0.68 -0.5
37,180 - GFF6593 0.68 +1.4
37,239 + GFF6593 0.73 +0.1
37,240 - GFF6593 0.73 +0.1
37,240 - GFF6593 0.73 +0.4

Or see this region's nucleotide sequence