Strain Fitness in Variovorax sp. SCN45 around GFF6567

Experiment: Community=Locust bean gum; Passage=1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=1
6,885	+		GFF6566	0.73	-1.0
6,885	+		GFF6566	0.73	-0.2
6,886	-		GFF6566	0.73	-1.4
6,987	+		GFF6566	0.77	-0.8
6,987	+		GFF6566	0.77	+3.2
6,988	-		GFF6566	0.77	-0.5
7,209	+		GFF6566	0.86	-2.5
7,210	-		GFF6566	0.86	-0.1
7,234	+		GFF6566	0.86	-0.5
7,234	+		GFF6566	0.86	-1.2
7,234	+		GFF6566	0.86	-1.0
7,234	+		GFF6566	0.86	-0.2
7,235	-		GFF6566	0.86	-1.0
7,235	-		GFF6566	0.86	+1.1
7,235	-		GFF6566	0.86	-0.9
7,281	+		GFF6566	0.88	-0.2
7,281	+		GFF6566	0.88	-1.1
7,312	-		GFF6566	0.89	-0.5
7,381	+				+0.2
7,382	-				+0.1
7,625	+				+0.1
7,625	+				-0.4
7,625	+				+0.2
7,625	+				-0.2
7,626	-				-1.6
7,626	-				+0.1
7,626	-				+1.0
7,647	-				-1.7
7,647	-				-0.6
7,647	-				+1.4
7,715	+				-0.5
7,715	+				-0.2
7,715	+				-1.1
7,715	+				-1.5
7,715	+				+0.0
7,715	+				-0.6
7,715	+				-1.0
7,715	+				-0.3
7,715	+				-0.7
7,715	+				-0.5
7,715	+				-0.2
7,716	-				-0.9
7,716	-				-1.1
7,716	-				-0.2
7,716	-				-0.7
7,716	-				-0.0
7,716	-				-0.0
7,716	-				-0.5
7,716	-				+0.1
7,716	-				-0.2
7,772	+		GFF6567	0.11	-0.3
7,773	-		GFF6567	0.11	+0.2
8,171	+		GFF6567	0.35	-1.6
8,172	-		GFF6567	0.35	+0.1
8,172	-		GFF6567	0.35	+0.4
8,172	-		GFF6567	0.35	-0.3
8,195	+		GFF6567	0.36	-0.9
8,195	+		GFF6567	0.36	-0.5
8,196	-		GFF6567	0.36	+0.6
8,196	-		GFF6567	0.36	-0.6
8,196	-		GFF6567	0.36	-0.5
8,196	-		GFF6567	0.36	-0.3
8,324	+		GFF6567	0.44	-0.3
8,324	+		GFF6567	0.44	-0.1
8,324	+		GFF6567	0.44	+0.6
8,324	+		GFF6567	0.44	-0.2
8,324	+		GFF6567	0.44	-0.6
8,324	+		GFF6567	0.44	+0.2
8,324	+		GFF6567	0.44	-1.2
8,324	+		GFF6567	0.44	+0.3
8,324	+		GFF6567	0.44	+0.6
8,324	+		GFF6567	0.44	+0.3
8,324	+		GFF6567	0.44	-0.3
8,325	-		GFF6567	0.44	-2.3
8,325	-		GFF6567	0.44	-1.1
8,325	-		GFF6567	0.44	-0.3
8,325	-		GFF6567	0.44	-0.0
8,325	-		GFF6567	0.44	-0.2
8,325	-		GFF6567	0.44	-0.3
8,325	-		GFF6567	0.44	+0.4
8,325	-		GFF6567	0.44	-1.2
8,325	-		GFF6567	0.44	+0.4
8,325	-		GFF6567	0.44	-3.1
8,360	+		GFF6567	0.46	+0.4
8,361	-		GFF6567	0.46	-1.1
8,609	+		GFF6567	0.61	-0.1
8,610	-		GFF6567	0.61	-1.0
8,610	-		GFF6567	0.61	-0.0
9,264	+				-0.2
9,264	+				-0.8
9,264	+				-0.5
9,264	+				+0.5
9,264	+				-0.5
9,264	+				-0.7
9,264	+				+0.1
9,264	+				-0.9
9,264	+				+0.1
9,265	-				-0.4
9,265	-				-0.8
9,265	-				-0.1
9,265	-				+1.1
9,265	-				-1.0
9,276	+				-0.7
9,447	-				-0.3
9,460	+				-1.2
9,460	+				+0.2
9,460	+				-0.7
9,460	+				+0.2
9,461	-				-0.4
9,516	+				+0.2
9,516	+				-0.9
9,517	-				+0.8
9,632	+				+2.4
9,632	+				-0.9
9,633	-				-2.1
9,655	+				+0.5
9,738	+		GFF6568	0.14	-2.5
9,738	+		GFF6568	0.14	-0.5
9,738	+		GFF6568	0.14	-1.4
9,738	+		GFF6568	0.14	+0.3
9,738	+		GFF6568	0.14	-0.9
9,738	+		GFF6568	0.14	+0.6
9,738	+		GFF6568	0.14	-0.6
9,738	+		GFF6568	0.14	-0.2
9,738	+		GFF6568	0.14	-0.5
9,739	-		GFF6568	0.14	-0.2
9,739	-		GFF6568	0.14	-0.2
9,753	+		GFF6568	0.15	+0.4
9,753	+		GFF6568	0.15	-1.2
9,753	+		GFF6568	0.15	+0.1
9,753	+		GFF6568	0.15	-0.5
9,754	-		GFF6568	0.15	+0.4
9,754	-		GFF6568	0.15	+0.4
9,754	-		GFF6568	0.15	-1.3
9,754	-		GFF6568	0.15	-0.4
9,754	-		GFF6568	0.15	-0.9
9,754	-		GFF6568	0.15	+0.3
9,754	-		GFF6568	0.15	-0.4
9,754	-		GFF6568	0.15	+0.1
9,822	+		GFF6568	0.21	-0.5
9,823	-		GFF6568	0.21	-0.2
9,823	-		GFF6568	0.21	-0.9
9,823	-		GFF6568	0.21	-2.8
9,900	-		GFF6568	0.28	-0.3
10,117	+		GFF6568	0.46	-0.7
10,117	+		GFF6568	0.46	+0.1
10,117	+		GFF6568	0.46	+0.1
10,117	+		GFF6568	0.46	-0.3
10,117	+		GFF6568	0.46	-1.5
10,117	+		GFF6568	0.46	+0.4
10,117	+		GFF6568	0.46	-0.6
10,117	+		GFF6568	0.46	-0.0
10,117	+		GFF6568	0.46	+2.4
10,118	-		GFF6568	0.46	-1.1
10,118	-		GFF6568	0.46	-0.1
10,118	-		GFF6568	0.46	+0.2
10,118	-		GFF6568	0.46	-1.5
10,118	-		GFF6568	0.46	+0.8
10,118	-		GFF6568	0.46	-0.2
10,118	-		GFF6568	0.46	-0.3
10,118	-		GFF6568	0.46	+0.1
10,210	+		GFF6568	0.54	-0.3
10,211	-		GFF6568	0.54	+0.2
10,249	+		GFF6568	0.57	+0.2
10,249	+		GFF6568	0.57	-0.2
10,249	+		GFF6568	0.57	-0.8
10,249	+		GFF6568	0.57	+0.1
10,250	-		GFF6568	0.57	+0.1
10,250	-		GFF6568	0.57	-0.7
10,250	-		GFF6568	0.57	-0.4