Strain Fitness in Variovorax sp. SCN45 around GFF6545

Experiment: Community=Locust bean gum; Passage=1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF6544 and GFF6545 are separated by 10 nucleotidesGFF6545 and GFF6546 are separated by 191 nucleotides GFF6544 - D-Lactate dehydrogenase, cytochrome c-dependent (EC 1.1.2.4), at 41,224 to 42,630 GFF6544 GFF6545 - Uncharacterized MFS-type transporter, at 42,641 to 43,960 GFF6545 GFF6546 - hypothetical protein, at 44,152 to 45,111 GFF6546 Position (kb) 42 43 44Strain fitness (log2 ratio) -2 -1 0 1 2at 41.948 kb on + strand, within GFF6544at 41.948 kb on + strand, within GFF6544at 41.948 kb on + strand, within GFF6544at 41.948 kb on + strand, within GFF6544at 41.949 kb on - strand, within GFF6544at 41.949 kb on - strand, within GFF6544at 41.949 kb on - strand, within GFF6544at 41.949 kb on - strand, within GFF6544at 41.949 kb on - strand, within GFF6544at 42.020 kb on + strand, within GFF6544at 42.021 kb on - strand, within GFF6544at 42.038 kb on + strand, within GFF6544at 42.038 kb on + strand, within GFF6544at 42.039 kb on - strand, within GFF6544at 42.039 kb on - strand, within GFF6544at 42.039 kb on - strand, within GFF6544at 42.039 kb on - strand, within GFF6544at 42.039 kb on - strand, within GFF6544at 42.720 kb on + strandat 42.720 kb on + strandat 42.720 kb on + strandat 42.720 kb on + strandat 42.721 kb on + strandat 42.721 kb on - strandat 42.721 kb on - strandat 42.721 kb on - strandat 42.721 kb on - strandat 42.721 kb on - strandat 42.721 kb on - strandat 43.044 kb on + strand, within GFF6545at 43.045 kb on - strand, within GFF6545at 43.045 kb on - strand, within GFF6545at 43.168 kb on + strand, within GFF6545at 43.168 kb on + strand, within GFF6545at 43.168 kb on + strand, within GFF6545at 43.168 kb on + strand, within GFF6545at 43.168 kb on + strand, within GFF6545at 43.168 kb on + strand, within GFF6545at 43.169 kb on - strand, within GFF6545at 43.170 kb on + strand, within GFF6545at 43.170 kb on + strand, within GFF6545at 43.170 kb on + strand, within GFF6545at 43.170 kb on + strand, within GFF6545at 43.179 kb on + strand, within GFF6545at 43.179 kb on + strand, within GFF6545at 43.179 kb on + strand, within GFF6545at 43.180 kb on - strand, within GFF6545at 43.180 kb on - strand, within GFF6545at 43.333 kb on - strand, within GFF6545at 43.530 kb on + strand, within GFF6545at 43.531 kb on - strand, within GFF6545at 43.531 kb on - strand, within GFF6545at 43.539 kb on + strand, within GFF6545at 43.539 kb on + strand, within GFF6545at 43.539 kb on + strand, within GFF6545at 43.539 kb on + strand, within GFF6545at 43.539 kb on + strand, within GFF6545at 43.539 kb on + strand, within GFF6545at 43.539 kb on + strand, within GFF6545at 43.539 kb on - strand, within GFF6545at 43.540 kb on - strand, within GFF6545at 43.540 kb on - strand, within GFF6545at 43.540 kb on - strand, within GFF6545at 43.599 kb on + strand, within GFF6545at 43.599 kb on + strand, within GFF6545at 43.600 kb on - strand, within GFF6545at 43.600 kb on - strand, within GFF6545at 43.643 kb on + strand, within GFF6545at 43.643 kb on + strand, within GFF6545at 43.644 kb on - strand, within GFF6545at 43.644 kb on - strand, within GFF6545at 43.644 kb on - strand, within GFF6545at 43.644 kb on - strand, within GFF6545at 43.644 kb on - strand, within GFF6545at 43.764 kb on + strand, within GFF6545at 43.837 kb on - strandat 43.848 kb on + strandat 43.849 kb on - strandat 43.849 kb on - strandat 43.849 kb on - strandat 43.849 kb on - strandat 43.894 kb on - strandat 44.051 kb on - strandat 44.066 kb on - strandat 44.066 kb on - strandat 44.073 kb on - strandat 44.779 kb on + strand, within GFF6546at 44.780 kb on - strand, within GFF6546

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1
remove
41,948 + GFF6544 0.51 -1.8
41,948 + GFF6544 0.51 +0.9
41,948 + GFF6544 0.51 +0.3
41,948 + GFF6544 0.51 -0.6
41,949 - GFF6544 0.52 +0.1
41,949 - GFF6544 0.52 -1.3
41,949 - GFF6544 0.52 -0.1
41,949 - GFF6544 0.52 -0.3
41,949 - GFF6544 0.52 +2.7
42,020 + GFF6544 0.57 -0.1
42,021 - GFF6544 0.57 -1.7
42,038 + GFF6544 0.58 +1.4
42,038 + GFF6544 0.58 +0.5
42,039 - GFF6544 0.58 +0.3
42,039 - GFF6544 0.58 +0.8
42,039 - GFF6544 0.58 -1.9
42,039 - GFF6544 0.58 -2.1
42,039 - GFF6544 0.58 +0.4
42,720 + -1.1
42,720 + -0.3
42,720 + -0.4
42,720 + +0.0
42,721 + -1.9
42,721 - -0.9
42,721 - -0.8
42,721 - -1.4
42,721 - -0.8
42,721 - +0.7
42,721 - -1.4
43,044 + GFF6545 0.31 -0.4
43,045 - GFF6545 0.31 +0.5
43,045 - GFF6545 0.31 +1.8
43,168 + GFF6545 0.40 +0.6
43,168 + GFF6545 0.40 +0.0
43,168 + GFF6545 0.40 -0.4
43,168 + GFF6545 0.40 -0.4
43,168 + GFF6545 0.40 +0.4
43,168 + GFF6545 0.40 -1.4
43,169 - GFF6545 0.40 -0.6
43,170 + GFF6545 0.40 -1.0
43,170 + GFF6545 0.40 -0.4
43,170 + GFF6545 0.40 -0.3
43,170 + GFF6545 0.40 -0.1
43,179 + GFF6545 0.41 -0.7
43,179 + GFF6545 0.41 +0.9
43,179 + GFF6545 0.41 +0.2
43,180 - GFF6545 0.41 -0.9
43,180 - GFF6545 0.41 -0.1
43,333 - GFF6545 0.52 +0.2
43,530 + GFF6545 0.67 +1.0
43,531 - GFF6545 0.67 +0.4
43,531 - GFF6545 0.67 -0.0
43,539 + GFF6545 0.68 +0.3
43,539 + GFF6545 0.68 -1.1
43,539 + GFF6545 0.68 -0.5
43,539 + GFF6545 0.68 +0.5
43,539 + GFF6545 0.68 +0.3
43,539 + GFF6545 0.68 -0.2
43,539 + GFF6545 0.68 -0.6
43,539 - GFF6545 0.68 -0.5
43,540 - GFF6545 0.68 -0.3
43,540 - GFF6545 0.68 +0.0
43,540 - GFF6545 0.68 -0.4
43,599 + GFF6545 0.73 -0.3
43,599 + GFF6545 0.73 -0.5
43,600 - GFF6545 0.73 +0.1
43,600 - GFF6545 0.73 +0.4
43,643 + GFF6545 0.76 +0.4
43,643 + GFF6545 0.76 +0.1
43,644 - GFF6545 0.76 +0.2
43,644 - GFF6545 0.76 +1.4
43,644 - GFF6545 0.76 -0.6
43,644 - GFF6545 0.76 +1.5
43,644 - GFF6545 0.76 +0.2
43,764 + GFF6545 0.85 -0.3
43,837 - -0.2
43,848 + -0.2
43,849 - -0.9
43,849 - -0.2
43,849 - -0.4
43,849 - -0.6
43,894 - +0.7
44,051 - -1.5
44,066 - -0.0
44,066 - -0.1
44,073 - -0.6
44,779 + GFF6546 0.65 -0.7
44,780 - GFF6546 0.65 -0.1

Or see this region's nucleotide sequence