Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6465 and GFF6466 are separated by 27 nucleotides GFF6466 and GFF6467 are separated by 95 nucleotides GFF6467 and GFF6468 are separated by 44 nucleotides
GFF6465 - hypothetical protein, at 42,759 to 43,838
GFF6465
GFF6466 - no description, at 43,866 to 44,102
GFF6466
GFF6467 - Nucleoside-diphosphate-sugar epimerases, at 44,198 to 45,217
GFF6467
GFF6468 - TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein, at 45,262 to 46,230
GFF6468
Position (kb) 44
45
46 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 43.723 kb on + strand, within GFF6465 at 43.724 kb on - strand, within GFF6465 at 43.851 kb on + strand at 43.852 kb on - strand at 43.860 kb on + strand at 44.018 kb on - strand, within GFF6466 at 44.168 kb on + strand at 44.168 kb on + strand at 44.637 kb on - strand, within GFF6467 at 44.670 kb on - strand, within GFF6467 at 44.670 kb on - strand, within GFF6467 at 44.670 kb on - strand, within GFF6467 at 45.170 kb on + strand at 45.170 kb on + strand at 45.171 kb on - strand at 45.171 kb on - strand at 45.171 kb on - strand at 45.215 kb on + strand at 45.215 kb on + strand at 45.215 kb on + strand at 45.215 kb on + strand at 45.215 kb on + strand at 45.215 kb on + strand at 45.215 kb on + strand at 45.216 kb on - strand at 45.216 kb on - strand at 45.216 kb on - strand at 45.216 kb on - strand at 45.216 kb on - strand at 45.427 kb on + strand, within GFF6468 at 45.428 kb on - strand, within GFF6468 at 45.428 kb on - strand, within GFF6468 at 45.428 kb on - strand, within GFF6468 at 45.428 kb on - strand, within GFF6468 at 45.445 kb on + strand, within GFF6468 at 45.445 kb on + strand, within GFF6468 at 45.445 kb on + strand, within GFF6468 at 45.445 kb on + strand, within GFF6468 at 45.445 kb on + strand, within GFF6468 at 45.445 kb on + strand, within GFF6468 at 45.790 kb on + strand, within GFF6468 at 45.791 kb on - strand, within GFF6468 at 45.791 kb on - strand, within GFF6468
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 43,723 + GFF6465 0.89 +3.0 43,724 - GFF6465 0.89 +2.7 43,851 + +0.7 43,852 - +0.9 43,860 + -0.5 44,018 - GFF6466 0.64 +0.4 44,168 + -1.1 44,168 + -0.1 44,637 - GFF6467 0.43 -0.4 44,670 - GFF6467 0.46 +0.3 44,670 - GFF6467 0.46 +0.6 44,670 - GFF6467 0.46 +1.1 45,170 + +0.1 45,170 + -0.6 45,171 - +0.5 45,171 - +0.3 45,171 - -0.3 45,215 + +0.7 45,215 + -0.3 45,215 + -0.8 45,215 + +0.4 45,215 + -0.5 45,215 + -0.9 45,215 + -0.6 45,216 - -1.0 45,216 - -1.0 45,216 - -0.9 45,216 - -0.0 45,216 - -1.3 45,427 + GFF6468 0.17 +1.4 45,428 - GFF6468 0.17 +0.1 45,428 - GFF6468 0.17 -0.9 45,428 - GFF6468 0.17 -0.1 45,428 - GFF6468 0.17 -1.0 45,445 + GFF6468 0.19 +0.0 45,445 + GFF6468 0.19 -0.7 45,445 + GFF6468 0.19 -1.9 45,445 + GFF6468 0.19 -0.3 45,445 + GFF6468 0.19 -0.3 45,445 + GFF6468 0.19 +0.2 45,790 + GFF6468 0.54 -0.5 45,791 - GFF6468 0.55 +1.4 45,791 - GFF6468 0.55 +1.4
Or see this region's nucleotide sequence