Strain Fitness in Variovorax sp. SCN45 around GFF6460

Experiment: Community=Locust bean gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6458 and GFF6459 are separated by 142 nucleotidesGFF6459 and GFF6460 overlap by 4 nucleotidesGFF6460 and GFF6461 are separated by 14 nucleotidesGFF6461 and GFF6462 overlap by 4 nucleotides GFF6458 - Lipid A 4'-phosphatase LpxF-like, putative, at 35,859 to 36,563 GFF6458 GFF6459 - Two-component transcriptional regulatory protein BasR/PmrA (activated by BasS/PmrB), at 36,706 to 37,380 GFF6459 GFF6460 - Sensor protein BasS/PmrB (activates BasR/PmrA), at 37,377 to 38,732 GFF6460 GFF6461 - Thioesterase superfamily, at 38,747 to 39,169 GFF6461 GFF6462 - Integral membrane protein, at 39,166 to 40,065 GFF6462 Position (kb) 37 38 39Strain fitness (log2 ratio) -3 -2 -1 0 1at 36.398 kb on + strand, within GFF6458at 36.399 kb on - strand, within GFF6458at 36.435 kb on + strand, within GFF6458at 36.436 kb on - strand, within GFF6458at 36.654 kb on - strandat 36.654 kb on - strandat 36.654 kb on - strandat 36.675 kb on + strandat 36.676 kb on - strandat 36.713 kb on + strandat 36.713 kb on + strandat 36.713 kb on + strandat 36.714 kb on - strandat 36.760 kb on + strandat 36.760 kb on + strandat 36.761 kb on - strandat 36.838 kb on + strand, within GFF6459at 36.997 kb on + strand, within GFF6459at 36.998 kb on - strand, within GFF6459at 36.998 kb on - strand, within GFF6459at 37.012 kb on + strand, within GFF6459at 37.012 kb on + strand, within GFF6459at 37.013 kb on - strand, within GFF6459at 37.013 kb on - strand, within GFF6459at 37.240 kb on + strand, within GFF6459at 37.240 kb on + strand, within GFF6459at 37.346 kb on - strandat 37.494 kb on + strandat 37.495 kb on - strandat 37.579 kb on + strand, within GFF6460at 37.579 kb on + strand, within GFF6460at 37.579 kb on + strand, within GFF6460at 37.580 kb on - strand, within GFF6460at 37.665 kb on + strand, within GFF6460at 37.665 kb on + strand, within GFF6460at 37.665 kb on + strand, within GFF6460at 37.665 kb on + strand, within GFF6460at 37.665 kb on + strand, within GFF6460at 37.665 kb on + strand, within GFF6460at 37.666 kb on - strand, within GFF6460at 37.666 kb on - strand, within GFF6460at 37.666 kb on - strand, within GFF6460at 37.779 kb on + strand, within GFF6460at 37.779 kb on + strand, within GFF6460at 37.779 kb on + strand, within GFF6460at 37.779 kb on + strand, within GFF6460at 37.779 kb on + strand, within GFF6460at 37.780 kb on - strand, within GFF6460at 37.780 kb on - strand, within GFF6460at 37.780 kb on - strand, within GFF6460at 37.780 kb on - strand, within GFF6460at 37.809 kb on + strand, within GFF6460at 37.809 kb on + strand, within GFF6460at 37.809 kb on + strand, within GFF6460at 37.809 kb on + strand, within GFF6460at 37.809 kb on + strand, within GFF6460at 37.810 kb on - strand, within GFF6460at 37.810 kb on - strand, within GFF6460at 37.810 kb on - strand, within GFF6460at 37.810 kb on - strand, within GFF6460at 37.810 kb on - strand, within GFF6460at 38.916 kb on + strand, within GFF6461at 38.916 kb on + strand, within GFF6461at 38.916 kb on + strand, within GFF6461at 38.917 kb on - strand, within GFF6461at 38.917 kb on - strand, within GFF6461at 38.917 kb on - strand, within GFF6461at 38.917 kb on - strand, within GFF6461at 38.917 kb on - strand, within GFF6461at 38.917 kb on - strand, within GFF6461at 38.917 kb on - strand, within GFF6461at 38.917 kb on - strand, within GFF6461at 38.917 kb on - strand, within GFF6461at 38.917 kb on - strand, within GFF6461at 38.917 kb on - strand, within GFF6461at 38.917 kb on - strand, within GFF6461at 38.917 kb on - strand, within GFF6461at 38.917 kb on - strand, within GFF6461at 38.917 kb on - strand, within GFF6461at 38.917 kb on - strand, within GFF6461at 38.943 kb on + strand, within GFF6461at 39.066 kb on + strand, within GFF6461at 39.066 kb on + strand, within GFF6461at 39.066 kb on + strand, within GFF6461at 39.067 kb on - strand, within GFF6461at 39.067 kb on - strand, within GFF6461at 39.067 kb on - strand, within GFF6461at 39.132 kb on + strandat 39.133 kb on - strandat 39.133 kb on - strandat 39.266 kb on + strand, within GFF6462at 39.266 kb on + strand, within GFF6462at 39.266 kb on + strand, within GFF6462at 39.266 kb on + strand, within GFF6462at 39.266 kb on + strand, within GFF6462at 39.267 kb on - strand, within GFF6462at 39.267 kb on - strand, within GFF6462at 39.563 kb on + strand, within GFF6462at 39.564 kb on - strand, within GFF6462at 39.564 kb on - strand, within GFF6462at 39.564 kb on - strand, within GFF6462at 39.564 kb on - strand, within GFF6462

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1
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36,398 + GFF6458 0.76 +0.9
36,399 - GFF6458 0.77 -0.5
36,435 + GFF6458 0.82 +0.1
36,436 - GFF6458 0.82 -0.9
36,654 - +0.3
36,654 - +0.4
36,654 - -0.6
36,675 + -0.7
36,676 - +0.1
36,713 + -0.3
36,713 + -0.4
36,713 + -0.1
36,714 - +0.4
36,760 + +0.6
36,760 + -0.3
36,761 - +0.4
36,838 + GFF6459 0.20 +0.4
36,997 + GFF6459 0.43 -0.1
36,998 - GFF6459 0.43 -1.4
36,998 - GFF6459 0.43 -0.5
37,012 + GFF6459 0.45 -1.1
37,012 + GFF6459 0.45 -1.2
37,013 - GFF6459 0.45 +1.4
37,013 - GFF6459 0.45 -0.6
37,240 + GFF6459 0.79 -0.6
37,240 + GFF6459 0.79 +1.0
37,346 - +0.3
37,494 + -0.4
37,495 - -0.9
37,579 + GFF6460 0.15 -0.3
37,579 + GFF6460 0.15 +1.4
37,579 + GFF6460 0.15 +1.1
37,580 - GFF6460 0.15 -0.9
37,665 + GFF6460 0.21 -0.3
37,665 + GFF6460 0.21 -0.7
37,665 + GFF6460 0.21 -1.4
37,665 + GFF6460 0.21 -1.1
37,665 + GFF6460 0.21 -0.4
37,665 + GFF6460 0.21 +0.0
37,666 - GFF6460 0.21 -0.6
37,666 - GFF6460 0.21 +0.3
37,666 - GFF6460 0.21 -0.1
37,779 + GFF6460 0.30 -0.9
37,779 + GFF6460 0.30 -0.1
37,779 + GFF6460 0.30 -1.3
37,779 + GFF6460 0.30 -0.3
37,779 + GFF6460 0.30 +0.2
37,780 - GFF6460 0.30 -0.3
37,780 - GFF6460 0.30 -0.3
37,780 - GFF6460 0.30 -1.4
37,780 - GFF6460 0.30 -0.7
37,809 + GFF6460 0.32 -0.9
37,809 + GFF6460 0.32 -0.5
37,809 + GFF6460 0.32 +0.1
37,809 + GFF6460 0.32 +0.7
37,809 + GFF6460 0.32 -1.7
37,810 - GFF6460 0.32 -1.3
37,810 - GFF6460 0.32 -0.9
37,810 - GFF6460 0.32 -0.9
37,810 - GFF6460 0.32 -0.6
37,810 - GFF6460 0.32 +0.4
38,916 + GFF6461 0.40 -0.3
38,916 + GFF6461 0.40 +1.7
38,916 + GFF6461 0.40 -1.1
38,917 - GFF6461 0.40 +0.2
38,917 - GFF6461 0.40 -0.5
38,917 - GFF6461 0.40 +1.0
38,917 - GFF6461 0.40 -0.1
38,917 - GFF6461 0.40 +0.4
38,917 - GFF6461 0.40 -0.9
38,917 - GFF6461 0.40 -0.4
38,917 - GFF6461 0.40 -0.4
38,917 - GFF6461 0.40 +0.0
38,917 - GFF6461 0.40 -0.4
38,917 - GFF6461 0.40 -0.7
38,917 - GFF6461 0.40 -0.6
38,917 - GFF6461 0.40 +0.2
38,917 - GFF6461 0.40 +0.2
38,917 - GFF6461 0.40 +0.3
38,917 - GFF6461 0.40 +0.1
38,943 + GFF6461 0.46 -1.9
39,066 + GFF6461 0.75 +0.4
39,066 + GFF6461 0.75 -0.9
39,066 + GFF6461 0.75 -0.1
39,067 - GFF6461 0.76 -0.8
39,067 - GFF6461 0.76 +0.4
39,067 - GFF6461 0.76 +0.4
39,132 + +0.2
39,133 - +0.2
39,133 - -0.3
39,266 + GFF6462 0.11 -0.5
39,266 + GFF6462 0.11 -0.1
39,266 + GFF6462 0.11 +0.9
39,266 + GFF6462 0.11 -2.8
39,266 + GFF6462 0.11 -0.1
39,267 - GFF6462 0.11 -0.1
39,267 - GFF6462 0.11 -1.9
39,563 + GFF6462 0.44 -0.4
39,564 - GFF6462 0.44 -0.3
39,564 - GFF6462 0.44 +0.6
39,564 - GFF6462 0.44 -0.6
39,564 - GFF6462 0.44 -0.3

Or see this region's nucleotide sequence