Strain Fitness in Variovorax sp. SCN45 around GFF6457

Experiment: Community=Locust bean gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6456 and GFF6457 are separated by 57 nucleotidesGFF6457 and GFF6458 overlap by 14 nucleotidesGFF6458 and GFF6459 are separated by 142 nucleotides GFF6456 - Lipid A phosphoethanolamine transferase, putative, at 33,482 to 35,233 GFF6456 GFF6457 - no description, at 35,291 to 35,872 GFF6457 GFF6458 - Lipid A 4'-phosphatase LpxF-like, putative, at 35,859 to 36,563 GFF6458 GFF6459 - Two-component transcriptional regulatory protein BasR/PmrA (activated by BasS/PmrB), at 36,706 to 37,380 GFF6459 Position (kb) 35 36Strain fitness (log2 ratio) -2 -1 0 1 2at 34.458 kb on + strand, within GFF6456at 34.459 kb on - strand, within GFF6456at 34.575 kb on + strand, within GFF6456at 34.575 kb on + strand, within GFF6456at 34.576 kb on - strand, within GFF6456at 34.576 kb on - strand, within GFF6456at 34.576 kb on - strand, within GFF6456at 34.734 kb on + strand, within GFF6456at 34.734 kb on + strand, within GFF6456at 34.734 kb on + strand, within GFF6456at 34.735 kb on - strand, within GFF6456at 34.857 kb on + strand, within GFF6456at 34.869 kb on + strand, within GFF6456at 34.869 kb on + strand, within GFF6456at 34.869 kb on + strand, within GFF6456at 34.869 kb on + strand, within GFF6456at 34.869 kb on + strand, within GFF6456at 34.869 kb on + strand, within GFF6456at 34.869 kb on + strand, within GFF6456at 34.869 kb on + strand, within GFF6456at 34.869 kb on + strand, within GFF6456at 34.869 kb on + strand, within GFF6456at 34.870 kb on - strand, within GFF6456at 34.870 kb on - strand, within GFF6456at 34.870 kb on - strand, within GFF6456at 34.870 kb on - strand, within GFF6456at 34.870 kb on - strand, within GFF6456at 34.870 kb on - strand, within GFF6456at 34.870 kb on - strand, within GFF6456at 34.870 kb on - strand, within GFF6456at 34.870 kb on - strand, within GFF6456at 34.870 kb on - strand, within GFF6456at 34.870 kb on - strand, within GFF6456at 34.870 kb on - strand, within GFF6456at 35.004 kb on + strand, within GFF6456at 35.004 kb on + strand, within GFF6456at 35.004 kb on + strand, within GFF6456at 35.004 kb on + strand, within GFF6456at 35.004 kb on + strand, within GFF6456at 35.004 kb on + strand, within GFF6456at 35.004 kb on + strand, within GFF6456at 35.004 kb on + strand, within GFF6456at 35.004 kb on + strand, within GFF6456at 35.004 kb on + strand, within GFF6456at 35.004 kb on + strand, within GFF6456at 35.004 kb on + strand, within GFF6456at 35.005 kb on - strand, within GFF6456at 35.005 kb on - strand, within GFF6456at 35.005 kb on - strand, within GFF6456at 35.005 kb on - strand, within GFF6456at 35.005 kb on - strand, within GFF6456at 35.005 kb on - strand, within GFF6456at 35.005 kb on - strand, within GFF6456at 35.005 kb on - strand, within GFF6456at 35.005 kb on - strand, within GFF6456at 35.005 kb on - strand, within GFF6456at 35.005 kb on - strand, within GFF6456at 35.066 kb on + strandat 35.066 kb on + strandat 35.067 kb on - strandat 35.067 kb on - strandat 35.073 kb on + strandat 35.074 kb on - strandat 35.074 kb on - strandat 35.191 kb on + strandat 35.191 kb on + strandat 35.191 kb on + strandat 35.191 kb on + strandat 35.191 kb on + strandat 35.191 kb on + strandat 35.192 kb on - strandat 35.192 kb on - strandat 35.239 kb on + strandat 35.239 kb on + strandat 35.239 kb on + strandat 35.240 kb on - strandat 35.240 kb on - strandat 35.240 kb on - strandat 35.240 kb on - strandat 35.240 kb on - strandat 35.240 kb on - strandat 35.244 kb on + strandat 35.244 kb on + strandat 35.244 kb on + strandat 35.244 kb on + strandat 35.244 kb on + strandat 35.244 kb on + strandat 35.244 kb on + strandat 35.244 kb on + strandat 35.244 kb on + strandat 35.244 kb on + strandat 35.245 kb on - strandat 35.245 kb on - strandat 35.245 kb on - strandat 35.245 kb on - strandat 35.245 kb on - strandat 35.245 kb on - strandat 35.245 kb on - strandat 35.245 kb on - strandat 35.263 kb on + strandat 35.263 kb on + strandat 35.264 kb on - strandat 35.354 kb on - strand, within GFF6457at 35.354 kb on - strand, within GFF6457at 35.395 kb on + strand, within GFF6457at 35.395 kb on + strand, within GFF6457at 35.395 kb on + strand, within GFF6457at 35.396 kb on - strand, within GFF6457at 35.396 kb on - strand, within GFF6457at 35.396 kb on - strand, within GFF6457at 35.396 kb on - strand, within GFF6457at 35.457 kb on + strand, within GFF6457at 35.457 kb on + strand, within GFF6457at 35.458 kb on - strand, within GFF6457at 35.458 kb on - strand, within GFF6457at 35.458 kb on - strand, within GFF6457at 35.458 kb on - strand, within GFF6457at 35.622 kb on + strand, within GFF6457at 35.623 kb on - strand, within GFF6457at 35.623 kb on - strand, within GFF6457at 35.623 kb on - strand, within GFF6457at 35.863 kb on + strandat 35.864 kb on - strandat 35.972 kb on + strand, within GFF6458at 35.972 kb on + strand, within GFF6458at 35.983 kb on + strand, within GFF6458at 35.983 kb on + strand, within GFF6458at 35.983 kb on + strand, within GFF6458at 35.983 kb on + strand, within GFF6458at 35.983 kb on + strand, within GFF6458at 35.983 kb on + strand, within GFF6458at 35.983 kb on + strand, within GFF6458at 35.983 kb on + strand, within GFF6458at 35.984 kb on - strand, within GFF6458at 35.984 kb on - strand, within GFF6458at 35.984 kb on - strand, within GFF6458at 35.984 kb on - strand, within GFF6458at 36.091 kb on + strand, within GFF6458at 36.091 kb on + strand, within GFF6458at 36.092 kb on - strand, within GFF6458at 36.092 kb on - strand, within GFF6458at 36.092 kb on - strand, within GFF6458at 36.092 kb on - strand, within GFF6458at 36.092 kb on - strand, within GFF6458at 36.103 kb on + strand, within GFF6458at 36.103 kb on + strand, within GFF6458at 36.103 kb on + strand, within GFF6458at 36.103 kb on + strand, within GFF6458at 36.103 kb on + strand, within GFF6458at 36.104 kb on - strand, within GFF6458at 36.104 kb on - strand, within GFF6458at 36.104 kb on - strand, within GFF6458at 36.104 kb on - strand, within GFF6458at 36.104 kb on - strand, within GFF6458at 36.187 kb on + strand, within GFF6458at 36.187 kb on + strand, within GFF6458at 36.188 kb on - strand, within GFF6458at 36.188 kb on - strand, within GFF6458at 36.188 kb on - strand, within GFF6458at 36.398 kb on + strand, within GFF6458at 36.399 kb on - strand, within GFF6458at 36.435 kb on + strand, within GFF6458at 36.436 kb on - strand, within GFF6458at 36.654 kb on - strandat 36.654 kb on - strandat 36.654 kb on - strandat 36.675 kb on + strandat 36.676 kb on - strandat 36.713 kb on + strandat 36.713 kb on + strandat 36.713 kb on + strandat 36.714 kb on - strandat 36.760 kb on + strandat 36.760 kb on + strandat 36.761 kb on - strandat 36.838 kb on + strand, within GFF6459

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1
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34,458 + GFF6456 0.56 +0.7
34,459 - GFF6456 0.56 +0.4
34,575 + GFF6456 0.62 +1.4
34,575 + GFF6456 0.62 -0.3
34,576 - GFF6456 0.62 -0.1
34,576 - GFF6456 0.62 -0.6
34,576 - GFF6456 0.62 -0.6
34,734 + GFF6456 0.71 +0.0
34,734 + GFF6456 0.71 -0.1
34,734 + GFF6456 0.71 +0.9
34,735 - GFF6456 0.72 -0.4
34,857 + GFF6456 0.78 -1.2
34,869 + GFF6456 0.79 -0.5
34,869 + GFF6456 0.79 -0.7
34,869 + GFF6456 0.79 -0.3
34,869 + GFF6456 0.79 +0.3
34,869 + GFF6456 0.79 +0.2
34,869 + GFF6456 0.79 -0.4
34,869 + GFF6456 0.79 +1.4
34,869 + GFF6456 0.79 -0.3
34,869 + GFF6456 0.79 -0.1
34,869 + GFF6456 0.79 +0.1
34,870 - GFF6456 0.79 -2.1
34,870 - GFF6456 0.79 -0.4
34,870 - GFF6456 0.79 +0.0
34,870 - GFF6456 0.79 -0.3
34,870 - GFF6456 0.79 -0.3
34,870 - GFF6456 0.79 -1.1
34,870 - GFF6456 0.79 -0.6
34,870 - GFF6456 0.79 -0.8
34,870 - GFF6456 0.79 +0.6
34,870 - GFF6456 0.79 +1.0
34,870 - GFF6456 0.79 +0.1
34,870 - GFF6456 0.79 +0.3
35,004 + GFF6456 0.87 -0.4
35,004 + GFF6456 0.87 -0.0
35,004 + GFF6456 0.87 -0.6
35,004 + GFF6456 0.87 -0.2
35,004 + GFF6456 0.87 -0.8
35,004 + GFF6456 0.87 +0.5
35,004 + GFF6456 0.87 -0.0
35,004 + GFF6456 0.87 +0.6
35,004 + GFF6456 0.87 -0.1
35,004 + GFF6456 0.87 +0.8
35,004 + GFF6456 0.87 +0.1
35,004 + GFF6456 0.87 -0.4
35,005 - GFF6456 0.87 -0.5
35,005 - GFF6456 0.87 -0.2
35,005 - GFF6456 0.87 -1.0
35,005 - GFF6456 0.87 -0.4
35,005 - GFF6456 0.87 -0.7
35,005 - GFF6456 0.87 -0.6
35,005 - GFF6456 0.87 +1.4
35,005 - GFF6456 0.87 +1.0
35,005 - GFF6456 0.87 -0.6
35,005 - GFF6456 0.87 -1.6
35,005 - GFF6456 0.87 -0.4
35,066 + -1.0
35,066 + +2.4
35,067 - -0.0
35,067 - -1.0
35,073 + +1.4
35,074 - +0.1
35,074 - +0.0
35,191 + +1.4
35,191 + +0.9
35,191 + -0.0
35,191 + +1.4
35,191 + +0.0
35,191 + +0.0
35,192 - +1.1
35,192 - +0.4
35,239 + -0.0
35,239 + -1.5
35,239 + -0.2
35,240 - +1.0
35,240 - -0.6
35,240 - -0.0
35,240 - +0.4
35,240 - -0.8
35,240 - -0.1
35,244 + +0.6
35,244 + +1.2
35,244 + +0.3
35,244 + -1.3
35,244 + +0.4
35,244 + -0.0
35,244 + -0.4
35,244 + -1.1
35,244 + -1.3
35,244 + -0.2
35,245 - -0.6
35,245 - -1.2
35,245 - -1.0
35,245 - +0.0
35,245 - -0.8
35,245 - +0.1
35,245 - -1.3
35,245 - -0.1
35,263 + -0.4
35,263 + -0.7
35,264 - -1.5
35,354 - GFF6457 0.11 +0.4
35,354 - GFF6457 0.11 +1.6
35,395 + GFF6457 0.18 -1.5
35,395 + GFF6457 0.18 -1.0
35,395 + GFF6457 0.18 -0.2
35,396 - GFF6457 0.18 -0.3
35,396 - GFF6457 0.18 -1.5
35,396 - GFF6457 0.18 +0.4
35,396 - GFF6457 0.18 +0.1
35,457 + GFF6457 0.29 -0.8
35,457 + GFF6457 0.29 -0.1
35,458 - GFF6457 0.29 +0.5
35,458 - GFF6457 0.29 +0.9
35,458 - GFF6457 0.29 +1.0
35,458 - GFF6457 0.29 -1.1
35,622 + GFF6457 0.57 +0.0
35,623 - GFF6457 0.57 -0.2
35,623 - GFF6457 0.57 +0.3
35,623 - GFF6457 0.57 +1.0
35,863 + +0.9
35,864 - +0.3
35,972 + GFF6458 0.16 +1.4
35,972 + GFF6458 0.16 -0.2
35,983 + GFF6458 0.18 -0.4
35,983 + GFF6458 0.18 -0.1
35,983 + GFF6458 0.18 +1.0
35,983 + GFF6458 0.18 -0.1
35,983 + GFF6458 0.18 -0.6
35,983 + GFF6458 0.18 -1.0
35,983 + GFF6458 0.18 +0.1
35,983 + GFF6458 0.18 -0.5
35,984 - GFF6458 0.18 -0.6
35,984 - GFF6458 0.18 +0.0
35,984 - GFF6458 0.18 +0.5
35,984 - GFF6458 0.18 +0.3
36,091 + GFF6458 0.33 +0.2
36,091 + GFF6458 0.33 -0.4
36,092 - GFF6458 0.33 -1.4
36,092 - GFF6458 0.33 +0.2
36,092 - GFF6458 0.33 +0.7
36,092 - GFF6458 0.33 +1.2
36,092 - GFF6458 0.33 +0.4
36,103 + GFF6458 0.35 -0.2
36,103 + GFF6458 0.35 +1.4
36,103 + GFF6458 0.35 +1.1
36,103 + GFF6458 0.35 -0.0
36,103 + GFF6458 0.35 +0.4
36,104 - GFF6458 0.35 -1.3
36,104 - GFF6458 0.35 +0.1
36,104 - GFF6458 0.35 -0.5
36,104 - GFF6458 0.35 -0.1
36,104 - GFF6458 0.35 -0.5
36,187 + GFF6458 0.47 -0.2
36,187 + GFF6458 0.47 -0.6
36,188 - GFF6458 0.47 -0.2
36,188 - GFF6458 0.47 -0.2
36,188 - GFF6458 0.47 +0.4
36,398 + GFF6458 0.76 +0.9
36,399 - GFF6458 0.77 -0.5
36,435 + GFF6458 0.82 +0.1
36,436 - GFF6458 0.82 -0.9
36,654 - +0.3
36,654 - +0.4
36,654 - -0.6
36,675 + -0.7
36,676 - +0.1
36,713 + -0.3
36,713 + -0.4
36,713 + -0.1
36,714 - +0.4
36,760 + +0.6
36,760 + -0.3
36,761 - +0.4
36,838 + GFF6459 0.20 +0.4

Or see this region's nucleotide sequence