Strain Fitness in Variovorax sp. SCN45 around GFF6449

Experiment: Community=Locust bean gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6448 and GFF6449 are separated by 13 nucleotidesGFF6449 and GFF6450 are separated by 137 nucleotides GFF6448 - Glucans biosynthesis protein D precursor, at 24,468 to 26,066 GFF6448 GFF6449 - FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8), at 26,080 to 26,490 GFF6449 GFF6450 - Ethanolamine ammonia-lyase heavy chain (EC 4.3.1.7), at 26,628 to 28,022 GFF6450 Position (kb) 26 27Strain fitness (log2 ratio) -2 -1 0 1at 25.122 kb on + strand, within GFF6448at 25.122 kb on + strand, within GFF6448at 25.122 kb on + strand, within GFF6448at 25.123 kb on - strand, within GFF6448at 25.123 kb on - strand, within GFF6448at 25.311 kb on + strand, within GFF6448at 25.311 kb on + strand, within GFF6448at 25.311 kb on + strand, within GFF6448at 25.311 kb on + strand, within GFF6448at 25.311 kb on + strand, within GFF6448at 25.312 kb on - strand, within GFF6448at 25.312 kb on - strand, within GFF6448at 25.312 kb on - strand, within GFF6448at 25.312 kb on - strand, within GFF6448at 25.312 kb on - strand, within GFF6448at 25.312 kb on - strand, within GFF6448at 25.318 kb on - strand, within GFF6448at 25.515 kb on + strand, within GFF6448at 25.516 kb on - strand, within GFF6448at 25.516 kb on - strand, within GFF6448at 25.516 kb on - strand, within GFF6448at 25.533 kb on + strand, within GFF6448at 25.684 kb on - strand, within GFF6448at 25.684 kb on - strand, within GFF6448at 25.684 kb on - strand, within GFF6448at 25.905 kb on + strand, within GFF6448at 25.905 kb on + strand, within GFF6448at 25.906 kb on - strand, within GFF6448at 25.906 kb on - strand, within GFF6448at 25.906 kb on - strand, within GFF6448at 26.046 kb on + strandat 26.046 kb on + strandat 26.046 kb on + strandat 26.046 kb on + strandat 26.052 kb on + strandat 26.053 kb on - strandat 26.285 kb on + strand, within GFF6449at 26.285 kb on + strand, within GFF6449at 26.285 kb on + strand, within GFF6449at 26.285 kb on + strand, within GFF6449at 26.285 kb on + strand, within GFF6449at 26.285 kb on + strand, within GFF6449at 26.286 kb on - strand, within GFF6449at 26.286 kb on - strand, within GFF6449at 26.286 kb on - strand, within GFF6449at 26.286 kb on - strand, within GFF6449at 26.330 kb on + strand, within GFF6449at 26.393 kb on + strand, within GFF6449at 26.393 kb on + strand, within GFF6449at 26.393 kb on + strand, within GFF6449at 26.394 kb on - strand, within GFF6449at 26.394 kb on - strand, within GFF6449at 26.394 kb on - strand, within GFF6449at 26.634 kb on + strandat 26.721 kb on + strandat 26.721 kb on + strandat 26.722 kb on - strandat 26.722 kb on - strandat 26.826 kb on + strand, within GFF6450at 27.175 kb on - strand, within GFF6450at 27.175 kb on - strand, within GFF6450at 27.483 kb on + strand, within GFF6450at 27.483 kb on + strand, within GFF6450at 27.483 kb on + strand, within GFF6450at 27.483 kb on + strand, within GFF6450at 27.483 kb on + strand, within GFF6450at 27.483 kb on + strand, within GFF6450at 27.484 kb on - strand, within GFF6450at 27.484 kb on - strand, within GFF6450at 27.484 kb on - strand, within GFF6450at 27.484 kb on - strand, within GFF6450at 27.484 kb on - strand, within GFF6450at 27.484 kb on - strand, within GFF6450

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1
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25,122 + GFF6448 0.41 -0.3
25,122 + GFF6448 0.41 -0.4
25,122 + GFF6448 0.41 -1.2
25,123 - GFF6448 0.41 +0.3
25,123 - GFF6448 0.41 -0.2
25,311 + GFF6448 0.53 -0.1
25,311 + GFF6448 0.53 +0.2
25,311 + GFF6448 0.53 -0.5
25,311 + GFF6448 0.53 +0.3
25,311 + GFF6448 0.53 -0.7
25,312 - GFF6448 0.53 -1.7
25,312 - GFF6448 0.53 -0.7
25,312 - GFF6448 0.53 +0.2
25,312 - GFF6448 0.53 -0.8
25,312 - GFF6448 0.53 -1.2
25,312 - GFF6448 0.53 +0.4
25,318 - GFF6448 0.53 +0.1
25,515 + GFF6448 0.65 +0.2
25,516 - GFF6448 0.66 -1.4
25,516 - GFF6448 0.66 +0.3
25,516 - GFF6448 0.66 +0.0
25,533 + GFF6448 0.67 -0.7
25,684 - GFF6448 0.76 -0.3
25,684 - GFF6448 0.76 -0.0
25,684 - GFF6448 0.76 -0.1
25,905 + GFF6448 0.90 -0.5
25,905 + GFF6448 0.90 +0.3
25,906 - GFF6448 0.90 -0.1
25,906 - GFF6448 0.90 -0.5
25,906 - GFF6448 0.90 -0.1
26,046 + +0.1
26,046 + +0.5
26,046 + -0.5
26,046 + -0.0
26,052 + -1.0
26,053 - -0.4
26,285 + GFF6449 0.50 +0.4
26,285 + GFF6449 0.50 +0.9
26,285 + GFF6449 0.50 +1.1
26,285 + GFF6449 0.50 -0.1
26,285 + GFF6449 0.50 +0.1
26,285 + GFF6449 0.50 +0.0
26,286 - GFF6449 0.50 -0.9
26,286 - GFF6449 0.50 +1.0
26,286 - GFF6449 0.50 +0.0
26,286 - GFF6449 0.50 +1.3
26,330 + GFF6449 0.61 -0.9
26,393 + GFF6449 0.76 -1.9
26,393 + GFF6449 0.76 +0.6
26,393 + GFF6449 0.76 -1.7
26,394 - GFF6449 0.76 -0.1
26,394 - GFF6449 0.76 +1.1
26,394 - GFF6449 0.76 -0.8
26,634 + +1.0
26,721 + +0.4
26,721 + -1.1
26,722 - +0.1
26,722 - +0.6
26,826 + GFF6450 0.14 -1.1
27,175 - GFF6450 0.39 -0.4
27,175 - GFF6450 0.39 -1.3
27,483 + GFF6450 0.61 -0.4
27,483 + GFF6450 0.61 -1.2
27,483 + GFF6450 0.61 -1.1
27,483 + GFF6450 0.61 +0.1
27,483 + GFF6450 0.61 -0.8
27,483 + GFF6450 0.61 -0.3
27,484 - GFF6450 0.61 -0.8
27,484 - GFF6450 0.61 -0.2
27,484 - GFF6450 0.61 -0.7
27,484 - GFF6450 0.61 -0.6
27,484 - GFF6450 0.61 -0.6
27,484 - GFF6450 0.61 -0.6

Or see this region's nucleotide sequence