Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6430 and GFF6431 are separated by 112 nucleotides GFF6431 and GFF6432 overlap by 4 nucleotides GFF6432 and GFF6433 are separated by 1 nucleotides
GFF6430 - L-carnitine dehydratase/bile acid-inducible protein F, at 3,345 to 4,517
GFF6430
GFF6431 - hypothetical protein, at 4,630 to 5,406
GFF6431
GFF6432 - no description, at 5,403 to 6,131
GFF6432
GFF6433 - hypothetical protein, at 6,133 to 11,397
GFF6433
Position (kb) 5
6
7 Strain fitness (log2 ratio) -1
0
1 at 4.541 kb on + strand at 4.542 kb on - strand at 4.542 kb on - strand at 4.554 kb on + strand at 4.631 kb on + strand at 4.748 kb on + strand, within GFF6431 at 4.749 kb on - strand, within GFF6431 at 4.749 kb on - strand, within GFF6431 at 4.749 kb on - strand, within GFF6431 at 4.916 kb on + strand, within GFF6431 at 5.159 kb on + strand, within GFF6431 at 5.336 kb on + strand at 5.530 kb on + strand, within GFF6432 at 5.531 kb on - strand, within GFF6432 at 6.284 kb on + strand at 6.285 kb on - strand at 6.662 kb on + strand, within GFF6433 at 6.663 kb on - strand, within GFF6433 at 6.728 kb on + strand, within GFF6433 at 6.728 kb on + strand, within GFF6433 at 6.728 kb on + strand, within GFF6433 at 6.728 kb on + strand, within GFF6433 at 6.729 kb on - strand, within GFF6433 at 6.815 kb on + strand, within GFF6433 at 6.815 kb on + strand, within GFF6433 at 6.944 kb on + strand, within GFF6433 at 6.995 kb on + strand, within GFF6433 at 6.995 kb on + strand, within GFF6433 at 6.996 kb on - strand, within GFF6433 at 7.055 kb on + strand, within GFF6433 at 7.055 kb on + strand, within GFF6433 at 7.103 kb on + strand, within GFF6433 at 7.103 kb on + strand, within GFF6433 at 7.103 kb on + strand, within GFF6433 at 7.103 kb on + strand, within GFF6433 at 7.104 kb on - strand, within GFF6433 at 7.104 kb on - strand, within GFF6433 at 7.104 kb on - strand, within GFF6433
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 4,541 + +0.1 4,542 - -1.4 4,542 - -0.4 4,554 + +0.4 4,631 + +0.6 4,748 + GFF6431 0.15 -0.1 4,749 - GFF6431 0.15 -0.1 4,749 - GFF6431 0.15 +0.0 4,749 - GFF6431 0.15 -0.6 4,916 + GFF6431 0.37 +0.6 5,159 + GFF6431 0.68 -0.5 5,336 + -0.6 5,530 + GFF6432 0.17 -1.2 5,531 - GFF6432 0.18 -0.6 6,284 + +0.8 6,285 - -0.4 6,662 + GFF6433 0.10 -0.5 6,663 - GFF6433 0.10 +1.4 6,728 + GFF6433 0.11 -0.4 6,728 + GFF6433 0.11 -0.1 6,728 + GFF6433 0.11 -0.0 6,728 + GFF6433 0.11 -0.2 6,729 - GFF6433 0.11 -1.3 6,815 + GFF6433 0.13 -0.6 6,815 + GFF6433 0.13 +0.6 6,944 + GFF6433 0.15 -0.4 6,995 + GFF6433 0.16 +0.9 6,995 + GFF6433 0.16 -0.8 6,996 - GFF6433 0.16 -0.3 7,055 + GFF6433 0.18 +0.0 7,055 + GFF6433 0.18 -0.7 7,103 + GFF6433 0.18 -0.6 7,103 + GFF6433 0.18 +0.9 7,103 + GFF6433 0.18 -0.4 7,103 + GFF6433 0.18 +0.4 7,104 - GFF6433 0.18 -0.3 7,104 - GFF6433 0.18 -0.1 7,104 - GFF6433 0.18 +1.0
Or see this region's nucleotide sequence