Strain Fitness in Variovorax sp. SCN45 around GFF643

Experiment: Community=Locust bean gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF642 and GFF643 are separated by 28 nucleotidesGFF643 and GFF644 are separated by 95 nucleotidesGFF644 and GFF645 are separated by 15 nucleotides GFF642 - Membrane protease family protein BA0301, at 693,224 to 694,120 GFF642 GFF643 - no description, at 694,149 to 694,358 GFF643 GFF644 - ABC transporter, substrate-binding protein (cluster 6, sulfate/molybdate/tungstate/phosphate), at 694,454 to 695,275 GFF644 GFF645 - hypothetical protein, at 695,291 to 696,193 GFF645 Position (kb) 694 695Strain fitness (log2 ratio) -2 -1 0 1 2at 693.275 kb on + strandat 693.275 kb on + strandat 693.276 kb on - strandat 693.294 kb on - strandat 693.419 kb on + strand, within GFF642at 693.419 kb on + strand, within GFF642at 693.419 kb on + strand, within GFF642at 693.419 kb on + strand, within GFF642at 693.419 kb on + strand, within GFF642at 693.419 kb on + strand, within GFF642at 693.420 kb on - strand, within GFF642at 693.420 kb on - strand, within GFF642at 693.420 kb on - strand, within GFF642at 693.420 kb on - strand, within GFF642at 693.420 kb on - strand, within GFF642at 693.420 kb on - strand, within GFF642at 693.665 kb on + strand, within GFF642at 693.665 kb on + strand, within GFF642at 693.665 kb on + strand, within GFF642at 693.665 kb on + strand, within GFF642at 693.665 kb on + strand, within GFF642at 693.666 kb on - strand, within GFF642at 693.666 kb on - strand, within GFF642at 693.666 kb on - strand, within GFF642at 693.666 kb on - strand, within GFF642at 693.666 kb on - strand, within GFF642at 693.666 kb on - strand, within GFF642at 693.722 kb on + strand, within GFF642at 693.723 kb on - strand, within GFF642at 693.723 kb on - strand, within GFF642at 693.723 kb on - strand, within GFF642at 693.723 kb on - strand, within GFF642at 693.870 kb on + strand, within GFF642at 693.870 kb on + strand, within GFF642at 693.870 kb on + strand, within GFF642at 693.870 kb on + strand, within GFF642at 693.870 kb on + strand, within GFF642at 693.870 kb on + strand, within GFF642at 693.870 kb on + strand, within GFF642at 693.870 kb on + strand, within GFF642at 693.870 kb on + strand, within GFF642at 693.871 kb on - strand, within GFF642at 693.871 kb on - strand, within GFF642at 693.871 kb on - strand, within GFF642at 693.871 kb on - strand, within GFF642at 693.871 kb on - strand, within GFF642at 693.871 kb on - strand, within GFF642at 693.875 kb on + strand, within GFF642at 693.875 kb on + strand, within GFF642at 693.875 kb on + strand, within GFF642at 693.875 kb on + strand, within GFF642at 693.875 kb on + strand, within GFF642at 693.876 kb on - strand, within GFF642at 693.876 kb on - strand, within GFF642at 693.876 kb on - strand, within GFF642at 693.876 kb on - strand, within GFF642at 693.876 kb on - strand, within GFF642at 693.876 kb on - strand, within GFF642at 694.105 kb on + strandat 694.105 kb on + strandat 694.106 kb on - strandat 694.106 kb on - strandat 694.112 kb on + strandat 694.112 kb on + strandat 694.112 kb on + strandat 694.112 kb on + strandat 694.113 kb on - strandat 694.113 kb on - strandat 694.113 kb on - strandat 694.113 kb on - strandat 694.113 kb on - strandat 694.113 kb on - strandat 694.173 kb on + strand, within GFF643at 694.173 kb on + strand, within GFF643at 694.401 kb on + strandat 694.401 kb on + strandat 694.401 kb on + strandat 694.402 kb on - strandat 694.402 kb on - strandat 694.402 kb on - strandat 694.442 kb on + strandat 694.610 kb on + strand, within GFF644at 694.610 kb on + strand, within GFF644at 694.667 kb on + strand, within GFF644at 694.667 kb on + strand, within GFF644at 694.668 kb on - strand, within GFF644at 694.668 kb on - strand, within GFF644at 694.668 kb on - strand, within GFF644at 694.919 kb on + strand, within GFF644at 694.920 kb on - strand, within GFF644at 694.943 kb on + strand, within GFF644at 694.943 kb on + strand, within GFF644at 694.943 kb on + strand, within GFF644at 694.943 kb on + strand, within GFF644at 694.943 kb on + strand, within GFF644at 694.944 kb on - strand, within GFF644at 694.944 kb on - strand, within GFF644at 694.944 kb on - strand, within GFF644at 694.944 kb on - strand, within GFF644at 694.946 kb on + strand, within GFF644at 694.946 kb on + strand, within GFF644at 694.946 kb on + strand, within GFF644at 694.946 kb on + strand, within GFF644at 694.946 kb on - strand, within GFF644at 694.947 kb on - strand, within GFF644at 694.947 kb on - strand, within GFF644at 694.947 kb on - strand, within GFF644at 694.947 kb on - strand, within GFF644at 695.105 kb on + strand, within GFF644at 695.105 kb on + strand, within GFF644at 695.105 kb on + strand, within GFF644at 695.105 kb on + strand, within GFF644at 695.105 kb on + strand, within GFF644at 695.105 kb on + strand, within GFF644at 695.105 kb on + strand, within GFF644at 695.105 kb on + strand, within GFF644at 695.207 kb on + strandat 695.239 kb on + strandat 695.293 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1
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693,275 + +0.3
693,275 + +0.1
693,276 - -0.1
693,294 - -0.1
693,419 + GFF642 0.22 +0.5
693,419 + GFF642 0.22 -0.4
693,419 + GFF642 0.22 -0.1
693,419 + GFF642 0.22 +0.5
693,419 + GFF642 0.22 -1.1
693,419 + GFF642 0.22 -0.0
693,420 - GFF642 0.22 -0.9
693,420 - GFF642 0.22 +0.2
693,420 - GFF642 0.22 -0.2
693,420 - GFF642 0.22 +0.0
693,420 - GFF642 0.22 -0.7
693,420 - GFF642 0.22 -0.4
693,665 + GFF642 0.49 -0.4
693,665 + GFF642 0.49 -0.5
693,665 + GFF642 0.49 +1.2
693,665 + GFF642 0.49 -0.9
693,665 + GFF642 0.49 -0.9
693,666 - GFF642 0.49 +0.4
693,666 - GFF642 0.49 +2.2
693,666 - GFF642 0.49 -0.3
693,666 - GFF642 0.49 +1.8
693,666 - GFF642 0.49 +0.7
693,666 - GFF642 0.49 +0.1
693,722 + GFF642 0.56 -1.6
693,723 - GFF642 0.56 -1.6
693,723 - GFF642 0.56 -0.6
693,723 - GFF642 0.56 +0.8
693,723 - GFF642 0.56 -0.7
693,870 + GFF642 0.72 +0.1
693,870 + GFF642 0.72 +1.2
693,870 + GFF642 0.72 -0.2
693,870 + GFF642 0.72 -0.5
693,870 + GFF642 0.72 -1.2
693,870 + GFF642 0.72 -0.1
693,870 + GFF642 0.72 +0.1
693,870 + GFF642 0.72 +1.0
693,870 + GFF642 0.72 -1.6
693,871 - GFF642 0.72 -0.3
693,871 - GFF642 0.72 -0.4
693,871 - GFF642 0.72 +0.3
693,871 - GFF642 0.72 +0.2
693,871 - GFF642 0.72 -0.4
693,871 - GFF642 0.72 +1.2
693,875 + GFF642 0.73 -0.9
693,875 + GFF642 0.73 +0.0
693,875 + GFF642 0.73 +0.7
693,875 + GFF642 0.73 +1.2
693,875 + GFF642 0.73 +0.8
693,876 - GFF642 0.73 +0.1
693,876 - GFF642 0.73 +0.4
693,876 - GFF642 0.73 -0.7
693,876 - GFF642 0.73 +0.5
693,876 - GFF642 0.73 +0.7
693,876 - GFF642 0.73 -0.3
694,105 + -0.1
694,105 + +0.2
694,106 - -0.8
694,106 - -0.5
694,112 + +0.2
694,112 + +0.5
694,112 + +0.1
694,112 + -0.3
694,113 - +2.0
694,113 - -1.0
694,113 - -0.1
694,113 - -0.3
694,113 - -0.7
694,113 - -0.9
694,173 + GFF643 0.11 -0.8
694,173 + GFF643 0.11 -0.9
694,401 + +0.2
694,401 + +0.2
694,401 + +1.2
694,402 - -0.9
694,402 - -0.7
694,402 - -0.8
694,442 + +0.1
694,610 + GFF644 0.19 -0.2
694,610 + GFF644 0.19 -0.2
694,667 + GFF644 0.26 +1.2
694,667 + GFF644 0.26 +0.4
694,668 - GFF644 0.26 -1.8
694,668 - GFF644 0.26 +0.2
694,668 - GFF644 0.26 -0.6
694,919 + GFF644 0.57 +0.5
694,920 - GFF644 0.57 +1.0
694,943 + GFF644 0.59 -0.9
694,943 + GFF644 0.59 -0.1
694,943 + GFF644 0.59 -0.2
694,943 + GFF644 0.59 +1.7
694,943 + GFF644 0.59 +0.1
694,944 - GFF644 0.60 -0.3
694,944 - GFF644 0.60 +0.0
694,944 - GFF644 0.60 -0.3
694,944 - GFF644 0.60 -1.2
694,946 + GFF644 0.60 +0.7
694,946 + GFF644 0.60 -0.5
694,946 + GFF644 0.60 +0.1
694,946 + GFF644 0.60 -0.5
694,946 - GFF644 0.60 -0.7
694,947 - GFF644 0.60 -0.2
694,947 - GFF644 0.60 -2.2
694,947 - GFF644 0.60 -1.6
694,947 - GFF644 0.60 -0.9
695,105 + GFF644 0.79 +0.2
695,105 + GFF644 0.79 -0.2
695,105 + GFF644 0.79 +0.4
695,105 + GFF644 0.79 +0.0
695,105 + GFF644 0.79 -0.4
695,105 + GFF644 0.79 -0.7
695,105 + GFF644 0.79 +0.3
695,105 + GFF644 0.79 -0.8
695,207 + +0.1
695,239 + -0.7
695,293 - +0.7

Or see this region's nucleotide sequence