Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6357 and GFF6358 overlap by 8 nucleotides GFF6358 and GFF6359 are separated by 22 nucleotides GFF6359 and GFF6360 are separated by 17 nucleotides
GFF6357 - T6SS forkhead associated domain protein ImpI/VasC, at 22,098 to 23,984
GFF6357
GFF6358 - T6SS protein serine/threonine phosphatase PppA, at 23,977 to 24,798
GFF6358
GFF6359 - FIG01219766: hypothetical protein, at 24,821 to 25,201
GFF6359
GFF6360 - FIG00432660: hypothetical protein, at 25,219 to 25,884
GFF6360
Position (kb) 23
24
25 Strain fitness (log2 ratio) -2
-1
0
1 at 23.360 kb on + strand, within GFF6357 at 23.940 kb on + strand at 23.940 kb on + strand at 23.940 kb on + strand at 23.941 kb on - strand at 24.379 kb on + strand, within GFF6358 at 24.721 kb on + strand at 24.721 kb on + strand at 24.722 kb on - strand at 24.833 kb on + strand at 24.834 kb on - strand at 24.834 kb on - strand at 25.071 kb on + strand, within GFF6359 at 25.071 kb on + strand, within GFF6359 at 25.071 kb on + strand, within GFF6359 at 25.071 kb on + strand, within GFF6359 at 25.072 kb on - strand, within GFF6359 at 25.072 kb on - strand, within GFF6359 at 25.072 kb on - strand, within GFF6359 at 25.072 kb on - strand, within GFF6359 at 25.072 kb on - strand, within GFF6359 at 25.072 kb on - strand, within GFF6359 at 25.151 kb on + strand, within GFF6359 at 25.556 kb on - strand, within GFF6360 at 25.590 kb on + strand, within GFF6360
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 23,360 + GFF6357 0.67 +0.6 23,940 + -1.7 23,940 + -0.2 23,940 + -2.5 23,941 - -0.4 24,379 + GFF6358 0.49 +0.7 24,721 + -0.0 24,721 + -0.6 24,722 - +0.6 24,833 + -1.4 24,834 - +1.0 24,834 - +0.0 25,071 + GFF6359 0.66 +0.6 25,071 + GFF6359 0.66 -0.5 25,071 + GFF6359 0.66 +0.8 25,071 + GFF6359 0.66 -0.1 25,072 - GFF6359 0.66 +0.2 25,072 - GFF6359 0.66 +0.6 25,072 - GFF6359 0.66 +0.8 25,072 - GFF6359 0.66 +0.6 25,072 - GFF6359 0.66 -0.3 25,072 - GFF6359 0.66 +1.5 25,151 + GFF6359 0.87 +0.2 25,556 - GFF6360 0.51 +1.2 25,590 + GFF6360 0.56 +0.3
Or see this region's nucleotide sequence