Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6355 and GFF6356 are separated by 129 nucleotides GFF6356 and GFF6357 are separated by 64 nucleotides GFF6357 and GFF6358 overlap by 8 nucleotides GFF6358 and GFF6359 are separated by 22 nucleotides
GFF6355 - T6SS secretion lipoprotein TssJ (VasD), at 20,978 to 21,493
GFF6355
GFF6356 - putative lipoprotein, at 21,623 to 22,033
GFF6356
GFF6357 - T6SS forkhead associated domain protein ImpI/VasC, at 22,098 to 23,984
GFF6357
GFF6358 - T6SS protein serine/threonine phosphatase PppA, at 23,977 to 24,798
GFF6358
GFF6359 - FIG01219766: hypothetical protein, at 24,821 to 25,201
GFF6359
Position (kb) 22
23
24 Strain fitness (log2 ratio) -2
-1
0
1 at 21.276 kb on + strand, within GFF6355 at 21.521 kb on + strand at 21.521 kb on + strand at 21.523 kb on + strand at 21.523 kb on + strand at 21.612 kb on - strand at 21.771 kb on - strand, within GFF6356 at 22.379 kb on - strand, within GFF6357 at 22.386 kb on + strand, within GFF6357 at 22.386 kb on + strand, within GFF6357 at 23.360 kb on + strand, within GFF6357 at 23.940 kb on + strand at 23.940 kb on + strand at 23.940 kb on + strand at 23.941 kb on - strand at 24.379 kb on + strand, within GFF6358 at 24.721 kb on + strand at 24.721 kb on + strand at 24.722 kb on - strand at 24.833 kb on + strand at 24.834 kb on - strand at 24.834 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 21,276 + GFF6355 0.58 -0.7 21,521 + -0.3 21,521 + -1.5 21,523 + +0.7 21,523 + -0.5 21,612 - -0.7 21,771 - GFF6356 0.36 -2.6 22,379 - GFF6357 0.15 -0.1 22,386 + GFF6357 0.15 +0.2 22,386 + GFF6357 0.15 +0.4 23,360 + GFF6357 0.67 +0.6 23,940 + -1.7 23,940 + -0.2 23,940 + -2.5 23,941 - -0.4 24,379 + GFF6358 0.49 +0.7 24,721 + -0.0 24,721 + -0.6 24,722 - +0.6 24,833 + -1.4 24,834 - +1.0 24,834 - +0.0
Or see this region's nucleotide sequence