Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6350 and GFF6351 are separated by 31 nucleotides GFF6351 and GFF6352 are separated by 1 nucleotides
GFF6350 - T6SS Serine/threonine protein kinase (EC 2.7.11.1) PpkA, at 11,737 to 13,650
GFF6350
GFF6351 - T6SS associated component TagF (ImpM), at 13,682 to 14,395
GFF6351
GFF6352 - T6SS component TssM (IcmF/VasK), at 14,397 to 18,056
GFF6352
Position (kb) 13
14
15 Strain fitness (log2 ratio) -2
-1
0
1
2 at 12.713 kb on + strand, within GFF6350 at 12.713 kb on + strand, within GFF6350 at 12.713 kb on + strand, within GFF6350 at 12.713 kb on + strand, within GFF6350 at 12.713 kb on + strand, within GFF6350 at 12.713 kb on + strand, within GFF6350 at 12.713 kb on + strand, within GFF6350 at 12.713 kb on + strand, within GFF6350 at 12.714 kb on - strand, within GFF6350 at 12.714 kb on - strand, within GFF6350 at 12.714 kb on - strand, within GFF6350 at 12.714 kb on - strand, within GFF6350 at 12.714 kb on - strand, within GFF6350 at 12.714 kb on - strand, within GFF6350 at 12.714 kb on - strand, within GFF6350 at 12.714 kb on - strand, within GFF6350 at 12.714 kb on - strand, within GFF6350 at 12.863 kb on + strand, within GFF6350 at 12.863 kb on + strand, within GFF6350 at 12.864 kb on - strand, within GFF6350 at 12.923 kb on + strand, within GFF6350 at 12.923 kb on + strand, within GFF6350 at 12.923 kb on + strand, within GFF6350 at 12.923 kb on + strand, within GFF6350 at 12.944 kb on + strand, within GFF6350 at 12.945 kb on - strand, within GFF6350 at 12.989 kb on + strand, within GFF6350 at 12.990 kb on - strand, within GFF6350 at 12.990 kb on - strand, within GFF6350 at 12.990 kb on - strand, within GFF6350 at 12.990 kb on - strand, within GFF6350 at 13.263 kb on - strand, within GFF6350 at 13.263 kb on - strand, within GFF6350 at 13.280 kb on + strand, within GFF6350 at 13.281 kb on - strand, within GFF6350 at 13.281 kb on - strand, within GFF6350 at 13.463 kb on + strand at 13.463 kb on + strand at 13.463 kb on + strand at 13.463 kb on + strand at 13.463 kb on + strand at 13.463 kb on + strand at 13.463 kb on + strand at 13.464 kb on - strand at 13.464 kb on - strand at 13.464 kb on - strand at 13.464 kb on - strand at 13.464 kb on - strand at 13.503 kb on - strand at 13.797 kb on + strand, within GFF6351 at 13.879 kb on + strand, within GFF6351 at 13.879 kb on + strand, within GFF6351 at 14.025 kb on + strand, within GFF6351 at 14.025 kb on + strand, within GFF6351 at 14.062 kb on - strand, within GFF6351 at 14.103 kb on + strand, within GFF6351 at 14.205 kb on + strand, within GFF6351 at 14.206 kb on - strand, within GFF6351 at 14.206 kb on - strand, within GFF6351 at 14.452 kb on + strand at 14.452 kb on + strand at 14.452 kb on + strand at 14.452 kb on + strand at 14.453 kb on - strand at 14.702 kb on - strand at 14.860 kb on + strand, within GFF6352 at 15.277 kb on + strand, within GFF6352 at 15.277 kb on + strand, within GFF6352 at 15.278 kb on - strand, within GFF6352 at 15.278 kb on - strand, within GFF6352
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 12,713 + GFF6350 0.51 -0.3 12,713 + GFF6350 0.51 -0.7 12,713 + GFF6350 0.51 -0.0 12,713 + GFF6350 0.51 -0.2 12,713 + GFF6350 0.51 -1.8 12,713 + GFF6350 0.51 -0.8 12,713 + GFF6350 0.51 +0.8 12,713 + GFF6350 0.51 +0.0 12,714 - GFF6350 0.51 -0.9 12,714 - GFF6350 0.51 -1.0 12,714 - GFF6350 0.51 -0.6 12,714 - GFF6350 0.51 +1.1 12,714 - GFF6350 0.51 -0.8 12,714 - GFF6350 0.51 +1.1 12,714 - GFF6350 0.51 -0.1 12,714 - GFF6350 0.51 -0.7 12,714 - GFF6350 0.51 +1.6 12,863 + GFF6350 0.59 +0.4 12,863 + GFF6350 0.59 +1.8 12,864 - GFF6350 0.59 -0.0 12,923 + GFF6350 0.62 +1.5 12,923 + GFF6350 0.62 +0.8 12,923 + GFF6350 0.62 +0.3 12,923 + GFF6350 0.62 +0.8 12,944 + GFF6350 0.63 -0.9 12,945 - GFF6350 0.63 -0.6 12,989 + GFF6350 0.65 -0.2 12,990 - GFF6350 0.65 -1.6 12,990 - GFF6350 0.65 +0.4 12,990 - GFF6350 0.65 +0.1 12,990 - GFF6350 0.65 +1.2 13,263 - GFF6350 0.80 -1.0 13,263 - GFF6350 0.80 +0.1 13,280 + GFF6350 0.81 -2.5 13,281 - GFF6350 0.81 +0.1 13,281 - GFF6350 0.81 +0.4 13,463 + +0.1 13,463 + -1.0 13,463 + +1.4 13,463 + -0.7 13,463 + -1.5 13,463 + +0.4 13,463 + +0.1 13,464 - -0.5 13,464 - -0.8 13,464 - -0.4 13,464 - -0.2 13,464 - +1.7 13,503 - -0.1 13,797 + GFF6351 0.16 -0.7 13,879 + GFF6351 0.28 -0.2 13,879 + GFF6351 0.28 -2.6 14,025 + GFF6351 0.48 -1.0 14,025 + GFF6351 0.48 -1.6 14,062 - GFF6351 0.53 -0.8 14,103 + GFF6351 0.59 -0.2 14,205 + GFF6351 0.73 +0.4 14,206 - GFF6351 0.73 -0.2 14,206 - GFF6351 0.73 -0.2 14,452 + +0.2 14,452 + -0.6 14,452 + +0.2 14,452 + +1.8 14,453 - +0.7 14,702 - +0.7 14,860 + GFF6352 0.13 -0.7 15,277 + GFF6352 0.24 -0.3 15,277 + GFF6352 0.24 +0.3 15,278 - GFF6352 0.24 -0.1 15,278 - GFF6352 0.24 +0.1
Or see this region's nucleotide sequence