Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF632 and GFF633 are separated by 1 nucleotides GFF633 and GFF634 are separated by 21 nucleotides GFF634 and GFF635 are separated by 28 nucleotides
GFF632 - Urea ABC transporter, ATPase protein UrtE, at 681,528 to 682,229
GFF632
GFF633 - Urea ABC transporter, ATPase protein UrtD, at 682,231 to 682,974
GFF633
GFF634 - Urea ABC transporter, permease protein UrtC, at 682,996 to 684,186
GFF634
GFF635 - Urea ABC transporter, permease protein UrtB, at 684,215 to 685,129
GFF635
Position (kb) 682
683
684
685 Strain fitness (log2 ratio) -2
-1
0
1 at 682.678 kb on + strand, within GFF633 at 682.679 kb on - strand, within GFF633 at 683.582 kb on + strand, within GFF634 at 683.583 kb on - strand, within GFF634 at 683.592 kb on - strand, within GFF634 at 683.592 kb on - strand, within GFF634 at 683.666 kb on + strand, within GFF634 at 683.732 kb on + strand, within GFF634 at 683.732 kb on + strand, within GFF634 at 683.733 kb on - strand, within GFF634 at 684.053 kb on + strand, within GFF634 at 684.054 kb on - strand, within GFF634 at 684.054 kb on - strand, within GFF634 at 684.062 kb on + strand, within GFF634 at 684.062 kb on + strand, within GFF634 at 684.063 kb on - strand, within GFF634 at 684.424 kb on - strand, within GFF635 at 684.424 kb on - strand, within GFF635 at 684.825 kb on + strand, within GFF635 at 684.826 kb on - strand, within GFF635 at 684.909 kb on + strand, within GFF635 at 684.910 kb on - strand, within GFF635 at 684.910 kb on - strand, within GFF635 at 684.913 kb on - strand, within GFF635 at 684.960 kb on + strand, within GFF635 at 684.961 kb on - strand, within GFF635 at 684.970 kb on - strand, within GFF635
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 682,678 + GFF633 0.60 -0.2 682,679 - GFF633 0.60 -0.3 683,582 + GFF634 0.49 -0.5 683,583 - GFF634 0.49 +0.7 683,592 - GFF634 0.50 -0.5 683,592 - GFF634 0.50 -1.0 683,666 + GFF634 0.56 +0.1 683,732 + GFF634 0.62 -0.1 683,732 + GFF634 0.62 -0.3 683,733 - GFF634 0.62 -1.3 684,053 + GFF634 0.89 -0.7 684,054 - GFF634 0.89 +0.1 684,054 - GFF634 0.89 -0.8 684,062 + GFF634 0.90 -0.6 684,062 + GFF634 0.90 -0.4 684,063 - GFF634 0.90 -0.7 684,424 - GFF635 0.23 -0.1 684,424 - GFF635 0.23 -0.2 684,825 + GFF635 0.67 -0.0 684,826 - GFF635 0.67 +0.5 684,909 + GFF635 0.76 -0.3 684,910 - GFF635 0.76 -1.3 684,910 - GFF635 0.76 +1.1 684,913 - GFF635 0.76 +0.1 684,960 + GFF635 0.81 -0.8 684,961 - GFF635 0.82 -1.9 684,970 - GFF635 0.83 -0.4
Or see this region's nucleotide sequence