Strain Fitness in Variovorax sp. SCN45 around GFF6336

Experiment: Community=Locust bean gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6335 and GFF6336 are separated by 133 nucleotidesGFF6336 and GFF6337 are separated by 139 nucleotidesGFF6337 and GFF6338 overlap by 4 nucleotides GFF6335 - no description, at 927 to 1,277 GFF6335 GFF6336 - no description, at 1,411 to 1,911 GFF6336 GFF6337 - Ser/Thr protein phosphatase family protein, at 2,051 to 2,884 GFF6337 GFF6338 - no description, at 2,881 to 3,012 GFF6338 Position (kb) 1 2Strain fitness (log2 ratio) -2 -1 0 1 2 3at 0.514 kb on + strandat 0.514 kb on + strandat 0.514 kb on + strandat 0.702 kb on + strandat 0.703 kb on - strandat 1.063 kb on + strand, within GFF6335at 1.063 kb on + strand, within GFF6335at 1.063 kb on + strand, within GFF6335at 1.130 kb on + strand, within GFF6335at 1.130 kb on + strand, within GFF6335at 1.131 kb on - strand, within GFF6335at 1.131 kb on - strand, within GFF6335at 1.412 kb on + strandat 1.480 kb on + strand, within GFF6336at 1.508 kb on + strand, within GFF6336at 1.532 kb on + strand, within GFF6336at 1.532 kb on + strand, within GFF6336at 1.533 kb on - strand, within GFF6336at 1.533 kb on - strand, within GFF6336at 1.628 kb on + strand, within GFF6336at 2.005 kb on + strandat 2.005 kb on + strandat 2.006 kb on - strandat 2.015 kb on + strandat 2.015 kb on + strandat 2.015 kb on + strandat 2.046 kb on + strandat 2.046 kb on + strandat 2.060 kb on + strandat 2.061 kb on - strandat 2.061 kb on - strandat 2.061 kb on - strandat 2.061 kb on - strandat 2.115 kb on + strandat 2.116 kb on - strandat 2.176 kb on + strand, within GFF6337at 2.176 kb on + strand, within GFF6337at 2.177 kb on - strand, within GFF6337at 2.177 kb on - strand, within GFF6337at 2.177 kb on - strand, within GFF6337at 2.177 kb on - strand, within GFF6337at 2.341 kb on + strand, within GFF6337at 2.341 kb on + strand, within GFF6337at 2.342 kb on - strand, within GFF6337at 2.342 kb on - strand, within GFF6337at 2.374 kb on + strand, within GFF6337at 2.375 kb on - strand, within GFF6337at 2.375 kb on - strand, within GFF6337at 2.389 kb on + strand, within GFF6337at 2.389 kb on + strand, within GFF6337at 2.389 kb on + strand, within GFF6337at 2.389 kb on + strand, within GFF6337at 2.389 kb on + strand, within GFF6337at 2.390 kb on - strand, within GFF6337at 2.390 kb on - strand, within GFF6337at 2.390 kb on - strand, within GFF6337at 2.390 kb on - strand, within GFF6337at 2.390 kb on - strand, within GFF6337at 2.390 kb on - strand, within GFF6337at 2.409 kb on - strand, within GFF6337at 2.409 kb on - strand, within GFF6337at 2.467 kb on - strand, within GFF6337at 2.688 kb on + strand, within GFF6337at 2.689 kb on - strand, within GFF6337at 2.689 kb on - strand, within GFF6337at 2.814 kb on + strandat 2.814 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1
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514 + -0.1
514 + +0.7
514 + -0.4
702 + +1.8
703 - -0.7
1,063 + GFF6335 0.39 -0.1
1,063 + GFF6335 0.39 +1.2
1,063 + GFF6335 0.39 +0.1
1,130 + GFF6335 0.58 -1.0
1,130 + GFF6335 0.58 -1.7
1,131 - GFF6335 0.58 -1.5
1,131 - GFF6335 0.58 +0.2
1,412 + +0.2
1,480 + GFF6336 0.14 -0.2
1,508 + GFF6336 0.19 +0.0
1,532 + GFF6336 0.24 +0.0
1,532 + GFF6336 0.24 +0.8
1,533 - GFF6336 0.24 +0.4
1,533 - GFF6336 0.24 +0.5
1,628 + GFF6336 0.43 +0.0
2,005 + +1.0
2,005 + -0.3
2,006 - +0.9
2,015 + -1.3
2,015 + -2.3
2,015 + -0.0
2,046 + -0.0
2,046 + +1.8
2,060 + -0.1
2,061 - -0.0
2,061 - -0.6
2,061 - +0.0
2,061 - +1.0
2,115 + +1.5
2,116 - -0.5
2,176 + GFF6337 0.15 +1.2
2,176 + GFF6337 0.15 -0.2
2,177 - GFF6337 0.15 +0.2
2,177 - GFF6337 0.15 -1.0
2,177 - GFF6337 0.15 -0.0
2,177 - GFF6337 0.15 -0.6
2,341 + GFF6337 0.35 -0.5
2,341 + GFF6337 0.35 -0.4
2,342 - GFF6337 0.35 -0.2
2,342 - GFF6337 0.35 -1.3
2,374 + GFF6337 0.39 -1.5
2,375 - GFF6337 0.39 -0.7
2,375 - GFF6337 0.39 +1.5
2,389 + GFF6337 0.41 -0.1
2,389 + GFF6337 0.41 +0.2
2,389 + GFF6337 0.41 +3.4
2,389 + GFF6337 0.41 +0.2
2,389 + GFF6337 0.41 -0.5
2,390 - GFF6337 0.41 -0.0
2,390 - GFF6337 0.41 -1.5
2,390 - GFF6337 0.41 -0.6
2,390 - GFF6337 0.41 +0.3
2,390 - GFF6337 0.41 -0.2
2,390 - GFF6337 0.41 -1.6
2,409 - GFF6337 0.43 -0.4
2,409 - GFF6337 0.43 +0.2
2,467 - GFF6337 0.50 +0.3
2,688 + GFF6337 0.76 -1.1
2,689 - GFF6337 0.76 -1.0
2,689 - GFF6337 0.76 +0.1
2,814 + -0.6
2,814 + -0.5

Or see this region's nucleotide sequence