Strain Fitness in Variovorax sp. SCN45 around GFF6331

Experiment: Community=Locust bean gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6330 and GFF6331 overlap by 8 nucleotidesGFF6331 and GFF6332 are separated by 97 nucleotides GFF6330 - BUG/TctC family periplasmic protein, at 124,611 to 125,585 GFF6330 GFF6331 - D-octopine dehydrogenase (EC 1.5.1.11), at 125,578 to 126,648 GFF6331 GFF6332 - Maltodextrin glucosidase (EC 3.2.1.20), at 126,746 to 128,434 GFF6332 Position (kb) 125 126 127Strain fitness (log2 ratio) -2 -1 0 1 2at 124.935 kb on + strand, within GFF6330at 124.935 kb on + strand, within GFF6330at 124.936 kb on - strand, within GFF6330at 124.936 kb on - strand, within GFF6330at 124.936 kb on - strand, within GFF6330at 125.016 kb on + strand, within GFF6330at 125.016 kb on + strand, within GFF6330at 125.017 kb on - strand, within GFF6330at 125.073 kb on + strand, within GFF6330at 125.073 kb on + strand, within GFF6330at 125.073 kb on + strand, within GFF6330at 125.073 kb on + strand, within GFF6330at 125.073 kb on + strand, within GFF6330at 125.073 kb on + strand, within GFF6330at 125.074 kb on - strand, within GFF6330at 125.074 kb on - strand, within GFF6330at 125.074 kb on - strand, within GFF6330at 125.074 kb on - strand, within GFF6330at 125.074 kb on - strand, within GFF6330at 125.074 kb on - strand, within GFF6330at 125.074 kb on - strand, within GFF6330at 125.583 kb on + strandat 125.584 kb on - strandat 125.584 kb on - strandat 125.584 kb on - strandat 125.593 kb on + strandat 125.593 kb on + strandat 125.594 kb on - strandat 125.594 kb on - strandat 125.807 kb on + strand, within GFF6331at 125.807 kb on + strand, within GFF6331at 125.807 kb on + strand, within GFF6331at 125.807 kb on + strand, within GFF6331at 125.807 kb on + strand, within GFF6331at 125.807 kb on + strand, within GFF6331at 125.807 kb on + strand, within GFF6331at 125.807 kb on + strand, within GFF6331at 125.808 kb on - strand, within GFF6331at 125.808 kb on - strand, within GFF6331at 125.808 kb on - strand, within GFF6331at 125.808 kb on - strand, within GFF6331at 125.808 kb on - strand, within GFF6331at 125.808 kb on - strand, within GFF6331at 125.808 kb on - strand, within GFF6331at 125.920 kb on + strand, within GFF6331at 125.920 kb on + strand, within GFF6331at 125.920 kb on + strand, within GFF6331at 125.920 kb on + strand, within GFF6331at 125.920 kb on + strand, within GFF6331at 125.921 kb on - strand, within GFF6331at 125.921 kb on - strand, within GFF6331at 125.921 kb on - strand, within GFF6331at 125.921 kb on - strand, within GFF6331at 125.921 kb on - strand, within GFF6331at 126.069 kb on + strand, within GFF6331at 126.070 kb on - strand, within GFF6331at 126.235 kb on + strand, within GFF6331at 126.236 kb on - strand, within GFF6331at 126.318 kb on - strand, within GFF6331at 126.318 kb on - strand, within GFF6331at 126.448 kb on + strand, within GFF6331at 126.448 kb on + strand, within GFF6331at 126.448 kb on + strand, within GFF6331at 126.449 kb on - strand, within GFF6331at 126.449 kb on - strand, within GFF6331at 126.449 kb on - strand, within GFF6331at 126.449 kb on - strand, within GFF6331at 126.469 kb on + strand, within GFF6331at 126.469 kb on + strand, within GFF6331at 126.692 kb on - strandat 126.803 kb on + strandat 126.803 kb on + strandat 126.803 kb on + strandat 126.803 kb on + strandat 126.804 kb on - strandat 126.812 kb on + strandat 126.812 kb on + strandat 126.812 kb on + strandat 126.813 kb on - strandat 126.813 kb on - strandat 127.145 kb on + strand, within GFF6332at 127.145 kb on + strand, within GFF6332at 127.145 kb on + strand, within GFF6332at 127.145 kb on + strand, within GFF6332at 127.145 kb on + strand, within GFF6332at 127.145 kb on + strand, within GFF6332at 127.145 kb on + strand, within GFF6332at 127.145 kb on + strand, within GFF6332at 127.145 kb on + strand, within GFF6332at 127.146 kb on - strand, within GFF6332at 127.146 kb on - strand, within GFF6332at 127.146 kb on - strand, within GFF6332at 127.146 kb on - strand, within GFF6332at 127.244 kb on + strand, within GFF6332at 127.244 kb on + strand, within GFF6332at 127.244 kb on + strand, within GFF6332at 127.244 kb on + strand, within GFF6332at 127.244 kb on + strand, within GFF6332at 127.244 kb on + strand, within GFF6332at 127.245 kb on - strand, within GFF6332at 127.245 kb on - strand, within GFF6332at 127.245 kb on - strand, within GFF6332at 127.247 kb on + strand, within GFF6332at 127.247 kb on + strand, within GFF6332at 127.248 kb on - strand, within GFF6332at 127.248 kb on - strand, within GFF6332at 127.248 kb on - strand, within GFF6332at 127.248 kb on - strand, within GFF6332at 127.248 kb on - strand, within GFF6332at 127.248 kb on - strand, within GFF6332at 127.248 kb on - strand, within GFF6332at 127.248 kb on - strand, within GFF6332at 127.248 kb on - strand, within GFF6332at 127.248 kb on - strand, within GFF6332at 127.248 kb on - strand, within GFF6332at 127.248 kb on - strand, within GFF6332at 127.469 kb on + strand, within GFF6332at 127.469 kb on + strand, within GFF6332at 127.470 kb on - strand, within GFF6332at 127.470 kb on - strand, within GFF6332at 127.470 kb on - strand, within GFF6332at 127.491 kb on - strand, within GFF6332at 127.613 kb on + strand, within GFF6332at 127.613 kb on + strand, within GFF6332at 127.613 kb on + strand, within GFF6332at 127.613 kb on + strand, within GFF6332at 127.614 kb on - strand, within GFF6332at 127.614 kb on - strand, within GFF6332at 127.614 kb on - strand, within GFF6332at 127.614 kb on - strand, within GFF6332at 127.646 kb on + strand, within GFF6332at 127.646 kb on + strand, within GFF6332at 127.646 kb on + strand, within GFF6332at 127.646 kb on + strand, within GFF6332at 127.646 kb on + strand, within GFF6332at 127.646 kb on + strand, within GFF6332at 127.647 kb on - strand, within GFF6332at 127.647 kb on - strand, within GFF6332

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1
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124,935 + GFF6330 0.33 -0.5
124,935 + GFF6330 0.33 +0.5
124,936 - GFF6330 0.33 -0.5
124,936 - GFF6330 0.33 -0.2
124,936 - GFF6330 0.33 -0.4
125,016 + GFF6330 0.42 +0.2
125,016 + GFF6330 0.42 -0.4
125,017 - GFF6330 0.42 -1.8
125,073 + GFF6330 0.47 -0.0
125,073 + GFF6330 0.47 +0.1
125,073 + GFF6330 0.47 +1.4
125,073 + GFF6330 0.47 -0.5
125,073 + GFF6330 0.47 -0.9
125,073 + GFF6330 0.47 -0.1
125,074 - GFF6330 0.47 -1.4
125,074 - GFF6330 0.47 -0.5
125,074 - GFF6330 0.47 -0.2
125,074 - GFF6330 0.47 -2.3
125,074 - GFF6330 0.47 -0.5
125,074 - GFF6330 0.47 -1.1
125,074 - GFF6330 0.47 -0.5
125,583 + -0.1
125,584 - -1.7
125,584 - -0.3
125,584 - -0.7
125,593 + -0.1
125,593 + -0.3
125,594 - -0.0
125,594 - +1.3
125,807 + GFF6331 0.21 +0.4
125,807 + GFF6331 0.21 +0.7
125,807 + GFF6331 0.21 +0.1
125,807 + GFF6331 0.21 -0.9
125,807 + GFF6331 0.21 +0.1
125,807 + GFF6331 0.21 -0.0
125,807 + GFF6331 0.21 -1.3
125,807 + GFF6331 0.21 +0.1
125,808 - GFF6331 0.21 +0.1
125,808 - GFF6331 0.21 -2.4
125,808 - GFF6331 0.21 -0.1
125,808 - GFF6331 0.21 +0.2
125,808 - GFF6331 0.21 +0.3
125,808 - GFF6331 0.21 -0.1
125,808 - GFF6331 0.21 -0.3
125,920 + GFF6331 0.32 -0.9
125,920 + GFF6331 0.32 -0.7
125,920 + GFF6331 0.32 +0.5
125,920 + GFF6331 0.32 +0.2
125,920 + GFF6331 0.32 +0.5
125,921 - GFF6331 0.32 -0.9
125,921 - GFF6331 0.32 +0.6
125,921 - GFF6331 0.32 -0.1
125,921 - GFF6331 0.32 -0.8
125,921 - GFF6331 0.32 +2.3
126,069 + GFF6331 0.46 -0.6
126,070 - GFF6331 0.46 +0.2
126,235 + GFF6331 0.61 +0.7
126,236 - GFF6331 0.61 +0.1
126,318 - GFF6331 0.69 +0.9
126,318 - GFF6331 0.69 +0.7
126,448 + GFF6331 0.81 +0.2
126,448 + GFF6331 0.81 +0.1
126,448 + GFF6331 0.81 +1.5
126,449 - GFF6331 0.81 +1.0
126,449 - GFF6331 0.81 -0.5
126,449 - GFF6331 0.81 +0.2
126,449 - GFF6331 0.81 -0.0
126,469 + GFF6331 0.83 -0.4
126,469 + GFF6331 0.83 -0.3
126,692 - -0.6
126,803 + +0.4
126,803 + -0.3
126,803 + +0.2
126,803 + +0.0
126,804 - -1.6
126,812 + -0.4
126,812 + +0.3
126,812 + -0.3
126,813 - +0.2
126,813 - +1.2
127,145 + GFF6332 0.24 -1.8
127,145 + GFF6332 0.24 +0.1
127,145 + GFF6332 0.24 -0.4
127,145 + GFF6332 0.24 +0.5
127,145 + GFF6332 0.24 +1.0
127,145 + GFF6332 0.24 +0.7
127,145 + GFF6332 0.24 +0.6
127,145 + GFF6332 0.24 +0.5
127,145 + GFF6332 0.24 -0.3
127,146 - GFF6332 0.24 -0.4
127,146 - GFF6332 0.24 +0.9
127,146 - GFF6332 0.24 -1.0
127,146 - GFF6332 0.24 -0.1
127,244 + GFF6332 0.29 -0.6
127,244 + GFF6332 0.29 -0.5
127,244 + GFF6332 0.29 -0.3
127,244 + GFF6332 0.29 -0.3
127,244 + GFF6332 0.29 +0.0
127,244 + GFF6332 0.29 +1.1
127,245 - GFF6332 0.30 -0.6
127,245 - GFF6332 0.30 +0.5
127,245 - GFF6332 0.30 +1.4
127,247 + GFF6332 0.30 -0.1
127,247 + GFF6332 0.30 -0.1
127,248 - GFF6332 0.30 -0.1
127,248 - GFF6332 0.30 -0.3
127,248 - GFF6332 0.30 +0.3
127,248 - GFF6332 0.30 -0.4
127,248 - GFF6332 0.30 -1.0
127,248 - GFF6332 0.30 -0.6
127,248 - GFF6332 0.30 -1.6
127,248 - GFF6332 0.30 -0.2
127,248 - GFF6332 0.30 +0.6
127,248 - GFF6332 0.30 +0.9
127,248 - GFF6332 0.30 -1.5
127,248 - GFF6332 0.30 -0.3
127,469 + GFF6332 0.43 -0.3
127,469 + GFF6332 0.43 -0.6
127,470 - GFF6332 0.43 -0.6
127,470 - GFF6332 0.43 +0.3
127,470 - GFF6332 0.43 -0.1
127,491 - GFF6332 0.44 +0.1
127,613 + GFF6332 0.51 +0.5
127,613 + GFF6332 0.51 -0.0
127,613 + GFF6332 0.51 -0.2
127,613 + GFF6332 0.51 +0.0
127,614 - GFF6332 0.51 -0.7
127,614 - GFF6332 0.51 -1.0
127,614 - GFF6332 0.51 +0.0
127,614 - GFF6332 0.51 -1.3
127,646 + GFF6332 0.53 +0.7
127,646 + GFF6332 0.53 -2.0
127,646 + GFF6332 0.53 -0.5
127,646 + GFF6332 0.53 -0.4
127,646 + GFF6332 0.53 -1.6
127,646 + GFF6332 0.53 +0.1
127,647 - GFF6332 0.53 +0.7
127,647 - GFF6332 0.53 +0.3

Or see this region's nucleotide sequence