Strain Fitness in Variovorax sp. SCN45 around GFF6317

Experiment: Community=Locust bean gum; Passage=1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=1
104,981	+		GFF6315	0.57	-1.0
104,981	-		GFF6315	0.57	-0.5
104,982	-		GFF6315	0.57	-0.9
104,982	-		GFF6315	0.57	-1.7
105,002	+		GFF6315	0.59	+0.2
105,152	+		GFF6315	0.70	+1.4
105,152	+		GFF6315	0.70	+0.1
105,152	+		GFF6315	0.70	-0.5
105,152	+		GFF6315	0.70	-0.1
105,152	+		GFF6315	0.70	+0.9
105,152	+		GFF6315	0.70	-0.8
105,152	+		GFF6315	0.70	-0.4
105,152	+		GFF6315	0.70	+0.0
105,153	-		GFF6315	0.70	-1.1
105,153	-		GFF6315	0.70	+0.3
105,153	-		GFF6315	0.70	-0.0
105,153	-		GFF6315	0.70	-0.6
105,153	-		GFF6315	0.70	+0.2
105,153	-		GFF6315	0.70	-0.4
105,153	-		GFF6315	0.70	-0.3
105,153	-		GFF6315	0.70	-0.8
105,153	-		GFF6315	0.70	+0.1
105,206	+		GFF6315	0.75	-0.2
105,206	+		GFF6315	0.75	-0.0
105,206	+		GFF6315	0.75	-0.5
105,206	+		GFF6315	0.75	-1.1
105,206	+		GFF6315	0.75	-1.0
105,206	+		GFF6315	0.75	-0.5
105,206	+		GFF6315	0.75	+0.7
105,206	+		GFF6315	0.75	+0.2
105,206	+		GFF6315	0.75	-0.3
105,206	+		GFF6315	0.75	-0.1
105,206	+		GFF6315	0.75	-1.6
105,206	+		GFF6315	0.75	-0.9
105,206	+		GFF6315	0.75	-1.5
105,206	+		GFF6315	0.75	+0.3
105,206	+		GFF6315	0.75	-0.1
105,206	+		GFF6315	0.75	-0.1
105,206	+		GFF6315	0.75	+1.5
105,207	-		GFF6315	0.75	+0.1
105,207	-		GFF6315	0.75	-1.1
105,207	-		GFF6315	0.75	-0.1
105,207	-		GFF6315	0.75	+0.4
105,207	-		GFF6315	0.75	+0.2
105,207	-		GFF6315	0.75	-0.2
105,207	-		GFF6315	0.75	+0.1
105,207	-		GFF6315	0.75	-0.4
105,207	-		GFF6315	0.75	-0.5
105,207	-		GFF6315	0.75	+0.7
105,207	-		GFF6315	0.75	+1.0
105,288	+		GFF6315	0.81	-2.1
105,288	+		GFF6315	0.81	-1.0
105,288	+		GFF6315	0.81	-0.0
105,288	+		GFF6315	0.81	-0.3
105,288	+		GFF6315	0.81	-0.6
105,288	+		GFF6315	0.81	-0.8
105,288	+		GFF6315	0.81	-1.1
105,288	+		GFF6315	0.81	-0.2
105,288	+		GFF6315	0.81	+0.2
105,289	-		GFF6315	0.81	-0.9
105,289	-		GFF6315	0.81	+0.2
105,289	-		GFF6315	0.81	-1.2
105,289	-		GFF6315	0.81	-0.7
105,289	-		GFF6315	0.81	-0.3
105,289	-		GFF6315	0.81	+0.0
105,289	-		GFF6315	0.81	+0.0
105,293	+		GFF6315	0.82	-0.1
105,293	+		GFF6315	0.82	-1.5
105,293	+		GFF6315	0.82	-1.5
105,293	+		GFF6315	0.82	-1.2
105,293	+		GFF6315	0.82	-1.1
105,293	+		GFF6315	0.82	+1.7
105,293	+		GFF6315	0.82	+1.4
105,293	+		GFF6315	0.82	-1.1
105,293	+		GFF6315	0.82	+0.6
105,293	+		GFF6315	0.82	+0.2
105,293	+		GFF6315	0.82	+0.3
105,293	+		GFF6315	0.82	+0.6
105,293	+		GFF6315	0.82	-0.1
105,293	+		GFF6315	0.82	-0.1
105,294	-		GFF6315	0.82	-0.4
105,294	-		GFF6315	0.82	-0.4
105,294	-		GFF6315	0.82	-0.2
105,294	-		GFF6315	0.82	-0.4
105,294	-		GFF6315	0.82	+0.3
105,294	-		GFF6315	0.82	+1.2
105,294	-		GFF6315	0.82	-0.1
105,294	-		GFF6315	0.82	-0.1
105,294	-		GFF6315	0.82	-1.0
105,294	-		GFF6315	0.82	+0.1
105,294	-		GFF6315	0.82	+0.2
105,294	-		GFF6315	0.82	-1.1
105,299	+		GFF6315	0.82	+0.7
105,380	+		GFF6315	0.88	+0.2
105,407	+				-0.5
105,407	+				-1.6
105,408	-				-0.3
105,408	-				-0.9
105,437	+				-3.0
105,437	+				+0.2
105,437	+				+0.2
105,437	+				-0.4
105,437	+				-0.1
105,437	+				+0.3
105,438	-				-0.4
105,438	-				+0.4
105,438	-				+0.3
105,438	-				+1.6
105,438	-				-0.6
105,438	-				-1.3
105,446	+				-0.6
105,446	+				+0.5
105,446	+				-0.4
105,446	+				+1.2
105,447	-				-0.4
105,467	+				-0.1
105,467	+				+0.2
105,467	+				-0.8
105,467	+				+1.1
105,467	+				-0.4
105,467	+				+0.9
105,467	+				+0.3
105,467	+				+0.7
105,468	-				-0.7
105,468	-				-1.0
105,468	-				-0.6
105,538	-				-0.6
105,602	+		GFF6316	0.33	+2.7
105,602	+		GFF6316	0.33	-1.9
105,602	+		GFF6316	0.33	-0.2
105,602	+		GFF6316	0.33	+0.0
105,602	+		GFF6316	0.33	+1.7
105,602	+		GFF6316	0.33	-0.8
105,602	+		GFF6316	0.33	+0.2
105,602	+		GFF6316	0.33	+0.9
105,603	-		GFF6316	0.33	+0.2
105,603	-		GFF6316	0.33	-0.3
105,603	-		GFF6316	0.33	-0.8
105,603	-		GFF6316	0.33	-0.3
105,603	-		GFF6316	0.33	-1.3
105,603	-		GFF6316	0.33	-0.2
105,603	-		GFF6316	0.33	+0.7
105,603	-		GFF6316	0.33	-1.6
105,603	-		GFF6316	0.33	-0.1
105,603	-		GFF6316	0.33	-0.3
105,603	-		GFF6316	0.33	+0.5
105,603	-		GFF6316	0.33	+0.6
105,603	-		GFF6316	0.33	-1.1
105,934	+		GFF6317	0.14	-0.0
105,934	+		GFF6317	0.14	-0.7
105,934	+		GFF6317	0.14	-1.3
105,934	+		GFF6317	0.14	-0.7
105,934	+		GFF6317	0.14	+1.0
105,934	+		GFF6317	0.14	-0.8
105,934	+		GFF6317	0.14	+0.1
105,935	-		GFF6317	0.14	+0.0
105,935	-		GFF6317	0.14	-0.6
105,935	-		GFF6317	0.14	+1.2
105,935	-		GFF6317	0.14	-0.4
105,935	-		GFF6317	0.14	-0.1
105,935	-		GFF6317	0.14	-0.1
105,935	-		GFF6317	0.14	+0.5
105,935	-		GFF6317	0.14	-0.1
105,935	-		GFF6317	0.14	-0.2
105,935	-		GFF6317	0.14	+0.2
105,937	+		GFF6317	0.14	-0.4
105,937	+		GFF6317	0.14	-0.1
105,937	+		GFF6317	0.14	-0.9
105,937	+		GFF6317	0.14	-0.4
105,937	+		GFF6317	0.14	-1.2
105,937	+		GFF6317	0.14	-0.0
105,937	+		GFF6317	0.14	+0.8
105,937	+		GFF6317	0.14	+0.2
105,937	+		GFF6317	0.14	+0.2
105,938	-		GFF6317	0.14	-0.3
105,938	-		GFF6317	0.14	-0.2
105,938	-		GFF6317	0.14	-0.1
105,938	-		GFF6317	0.14	-0.7
105,938	-		GFF6317	0.14	+1.7
105,938	-		GFF6317	0.14	-0.4
105,938	-		GFF6317	0.14	+0.7
105,938	-		GFF6317	0.14	+0.2
105,938	-		GFF6317	0.14	+0.3
105,938	-		GFF6317	0.14	+0.2
105,938	-		GFF6317	0.14	+0.0
105,938	-		GFF6317	0.14	+0.2
106,141	-		GFF6317	0.29	+0.7
106,144	+		GFF6317	0.30	-0.6
106,144	+		GFF6317	0.30	+2.3
106,145	-		GFF6317	0.30	-0.4
106,145	-		GFF6317	0.30	+0.6
106,145	-		GFF6317	0.30	-1.1
106,192	+		GFF6317	0.33	-0.8
106,192	+		GFF6317	0.33	-0.1
106,192	+		GFF6317	0.33	-2.4
106,192	+		GFF6317	0.33	+0.2
106,192	+		GFF6317	0.33	-0.3
106,192	+		GFF6317	0.33	+0.3
106,192	+		GFF6317	0.33	+0.0
106,192	+		GFF6317	0.33	-0.2
106,192	+		GFF6317	0.33	-0.8
106,192	+		GFF6317	0.33	+0.5
106,192	+		GFF6317	0.33	-0.3
106,192	+		GFF6317	0.33	+0.7
106,192	+		GFF6317	0.33	+0.2
106,192	+		GFF6317	0.33	+0.2
106,192	+		GFF6317	0.33	-0.1
106,193	-		GFF6317	0.33	-0.4
106,193	-		GFF6317	0.33	-0.0
106,193	-		GFF6317	0.33	-1.1
106,193	-		GFF6317	0.33	-0.8
106,193	-		GFF6317	0.33	-0.1
106,193	-		GFF6317	0.33	+1.2
106,193	-		GFF6317	0.33	+0.1
106,193	-		GFF6317	0.33	-0.2
106,193	-		GFF6317	0.33	+0.3
106,193	-		GFF6317	0.33	-0.3
106,193	-		GFF6317	0.33	+0.4
106,193	-		GFF6317	0.33	+0.3
106,193	-		GFF6317	0.33	+0.6
106,193	-		GFF6317	0.33	-0.7
106,193	-		GFF6317	0.33	-0.2
106,193	-		GFF6317	0.33	-0.5
106,240	+		GFF6317	0.37	+0.7
106,240	+		GFF6317	0.37	-0.0
106,240	+		GFF6317	0.37	+0.5
106,241	-		GFF6317	0.37	-0.1
106,241	-		GFF6317	0.37	-0.3
106,241	-		GFF6317	0.37	-0.4
106,241	-		GFF6317	0.37	-0.3
106,264	+		GFF6317	0.39	-0.2
106,264	+		GFF6317	0.39	-0.4
106,265	-		GFF6317	0.39	-0.0
106,265	-		GFF6317	0.39	+3.1
106,339	+		GFF6317	0.44	-0.2
106,339	+		GFF6317	0.44	-0.4
106,339	+		GFF6317	0.44	+1.4
106,339	+		GFF6317	0.44	-0.3
106,339	+		GFF6317	0.44	-0.6
106,339	+		GFF6317	0.44	-1.0
106,339	+		GFF6317	0.44	-0.6
106,339	+		GFF6317	0.44	-0.2
106,339	+		GFF6317	0.44	-0.2
106,339	+		GFF6317	0.44	-0.3
106,339	+		GFF6317	0.44	+0.2
106,339	+		GFF6317	0.44	+0.2
106,339	+		GFF6317	0.44	-1.1
106,339	+		GFF6317	0.44	-0.0
106,339	+		GFF6317	0.44	+1.3
106,339	+		GFF6317	0.44	-0.6
106,340	-		GFF6317	0.45	-1.2
106,340	-		GFF6317	0.45	+0.5
106,340	-		GFF6317	0.45	-0.5
106,340	-		GFF6317	0.45	+0.1
106,340	-		GFF6317	0.45	-0.3
106,340	-		GFF6317	0.45	-0.4
106,340	-		GFF6317	0.45	-0.6
106,340	-		GFF6317	0.45	+0.3
106,340	-		GFF6317	0.45	-0.3
106,340	-		GFF6317	0.45	+0.3
106,342	+		GFF6317	0.45	+0.3
106,342	+		GFF6317	0.45	-0.4
106,342	+		GFF6317	0.45	+1.0
106,342	+		GFF6317	0.45	-1.3
106,342	+		GFF6317	0.45	-0.3
106,342	+		GFF6317	0.45	+0.0
106,342	+		GFF6317	0.45	+0.2
106,342	+		GFF6317	0.45	-1.7
106,342	+		GFF6317	0.45	+0.7
106,342	+		GFF6317	0.45	+0.4
106,342	+		GFF6317	0.45	-1.6
106,342	+		GFF6317	0.45	-0.6
106,342	+		GFF6317	0.45	-1.0
106,342	+		GFF6317	0.45	-0.0
106,342	+		GFF6317	0.45	+0.6
106,342	+		GFF6317	0.45	-0.1
106,342	+		GFF6317	0.45	-0.1
106,343	-		GFF6317	0.45	+0.1
106,343	-		GFF6317	0.45	+0.1
106,343	-		GFF6317	0.45	+0.5
106,343	-		GFF6317	0.45	-1.3
106,343	-		GFF6317	0.45	+1.3
106,343	-		GFF6317	0.45	-0.6
106,384	+		GFF6317	0.48	+0.4
106,684	+		GFF6317	0.71	+0.0
106,684	+		GFF6317	0.71	+0.0
106,685	-		GFF6317	0.71	+0.0
106,792	+		GFF6317	0.79	+1.5
106,792	+		GFF6317	0.79	-0.9
106,792	+		GFF6317	0.79	+0.3
106,793	-		GFF6317	0.79	-0.7
106,793	-		GFF6317	0.79	+0.7
106,793	-		GFF6317	0.79	-0.4
106,894	+		GFF6317	0.87	-1.0
106,894	+		GFF6317	0.87	+1.2
106,894	+		GFF6317	0.87	+0.2
106,894	+		GFF6317	0.87	-1.2
106,894	+		GFF6317	0.87	-0.2
106,894	+		GFF6317	0.87	+0.3
106,894	+		GFF6317	0.87	+0.4
106,894	+		GFF6317	0.87	+1.1
106,895	-		GFF6317	0.87	-1.1
106,895	-		GFF6317	0.87	-1.0
106,895	-		GFF6317	0.87	-0.8
106,895	-		GFF6317	0.87	-0.8
106,895	-		GFF6317	0.87	-0.2
106,895	-		GFF6317	0.87	+0.5
106,966	+				-0.1
107,171	+				-0.9
107,172	-				-0.7
107,172	-				-0.1
107,172	-				+0.7
107,172	-				+1.7
107,172	-				-2.0
107,179	+				-0.3
107,179	+				-0.1
107,179	+				-0.5
107,179	+				-0.4
107,179	+				+0.5
107,179	+				-0.1
107,179	+				-1.8
107,179	+				-0.9
107,179	+				-2.2
107,179	+				+0.5
107,179	+				+0.2
107,180	-				+0.3
107,180	-				+0.1
107,180	-				+0.3
107,180	-				-0.8
107,180	-				+1.0
107,180	-				+0.2
107,180	-				+1.7
107,180	-				+0.4
107,180	-				-0.2
107,285	+				+0.2
107,285	+				-0.3
107,286	-				-0.1
107,286	-				-1.7
107,306	+				-0.6
107,306	+				-0.4
107,306	+				-1.0
107,306	+				+0.2
107,306	+				-0.5
107,306	+				+0.9
107,306	+				+0.6
107,307	-				-2.1
107,307	-				-0.7
107,307	-				-0.5
107,307	-				-0.3
107,307	-				-1.1
107,492	+		GFF6318	0.19	-1.7
107,492	+		GFF6318	0.19	-0.3
107,510	+		GFF6318	0.20	+0.7
107,510	+		GFF6318	0.20	+0.0
107,510	+		GFF6318	0.20	+0.8
107,510	+		GFF6318	0.20	-0.1
107,510	+		GFF6318	0.20	-0.8
107,510	+		GFF6318	0.20	-1.1
107,510	+		GFF6318	0.20	+0.8
107,510	+		GFF6318	0.20	-0.8
107,510	+		GFF6318	0.20	-0.6
107,510	+		GFF6318	0.20	+0.1
107,510	+		GFF6318	0.20	-0.1
107,510	+		GFF6318	0.20	-0.9
107,510	+		GFF6318	0.20	-0.9
107,510	+		GFF6318	0.20	-2.5
107,511	-		GFF6318	0.20	-1.3
107,511	-		GFF6318	0.20	-0.5
107,511	-		GFF6318	0.20	-0.7
107,511	-		GFF6318	0.20	-1.3
107,511	-		GFF6318	0.20	+0.1
107,511	-		GFF6318	0.20	-0.6
107,511	-		GFF6318	0.20	+0.1
107,511	-		GFF6318	0.20	-0.1
107,511	-		GFF6318	0.20	-0.8
107,511	-		GFF6318	0.20	-0.2
107,511	-		GFF6318	0.20	-0.7
107,511	-		GFF6318	0.20	-0.4
107,511	-		GFF6318	0.20	-0.3
107,511	-		GFF6318	0.20	+0.4
107,780	+		GFF6318	0.38	-0.5
107,822	+		GFF6318	0.41	-1.1
107,822	+		GFF6318	0.41	+0.1
107,822	+		GFF6318	0.41	+0.1
107,822	+		GFF6318	0.41	+0.4
107,823	-		GFF6318	0.41	-0.4
107,823	-		GFF6318	0.41	+0.5
107,823	-		GFF6318	0.41	-1.3
107,823	-		GFF6318	0.41	-2.3
107,823	-		GFF6318	0.41	-0.1
107,823	-		GFF6318	0.41	+0.7
107,825	+		GFF6318	0.41	-1.1