Strain Fitness in Variovorax sp. SCN45 around GFF6031

Experiment: Community=Locust bean gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6029 and GFF6030 are separated by 0 nucleotidesGFF6030 and GFF6031 are separated by 1 nucleotidesGFF6031 and GFF6032 are separated by 20 nucleotides GFF6029 - BUG/TctC family periplasmic protein, at 89,683 to 90,663 GFF6029 GFF6030 - Branched-chain amino acid ABC transporter, ATP-binding protein LivF (TC 3.A.1.4.1), at 90,664 to 91,440 GFF6030 GFF6031 - Branched-chain amino acid ABC transporter, ATP-binding protein LivG (TC 3.A.1.4.1), at 91,442 to 92,221 GFF6031 GFF6032 - Branched-chain amino acid ABC transporter, permease protein LivM (TC 3.A.1.4.1), at 92,242 to 93,450 GFF6032 Position (kb) 91 92 93Strain fitness (log2 ratio) -2 -1 0 1 2at 90.622 kb on + strandat 90.622 kb on + strandat 90.622 kb on + strandat 90.622 kb on + strandat 90.677 kb on + strandat 90.755 kb on + strand, within GFF6030at 90.755 kb on + strand, within GFF6030at 90.756 kb on - strand, within GFF6030at 90.756 kb on - strand, within GFF6030at 90.756 kb on - strand, within GFF6030at 90.756 kb on - strand, within GFF6030at 91.064 kb on + strand, within GFF6030at 91.064 kb on + strand, within GFF6030at 91.064 kb on + strand, within GFF6030at 91.064 kb on + strand, within GFF6030at 91.065 kb on - strand, within GFF6030at 91.065 kb on - strand, within GFF6030at 91.065 kb on - strand, within GFF6030at 91.464 kb on + strandat 91.465 kb on - strandat 91.465 kb on - strandat 91.465 kb on - strandat 91.530 kb on + strand, within GFF6031at 91.530 kb on + strand, within GFF6031at 91.531 kb on - strand, within GFF6031at 91.531 kb on - strand, within GFF6031at 91.531 kb on - strand, within GFF6031at 91.531 kb on - strand, within GFF6031at 91.746 kb on + strand, within GFF6031at 91.767 kb on + strand, within GFF6031at 91.767 kb on + strand, within GFF6031at 91.794 kb on + strand, within GFF6031at 91.794 kb on + strand, within GFF6031at 91.794 kb on + strand, within GFF6031at 91.795 kb on - strand, within GFF6031at 91.795 kb on - strand, within GFF6031at 91.795 kb on - strand, within GFF6031at 92.007 kb on + strand, within GFF6031at 92.049 kb on + strand, within GFF6031at 92.049 kb on + strand, within GFF6031at 92.050 kb on - strand, within GFF6031at 92.050 kb on - strand, within GFF6031at 92.112 kb on + strand, within GFF6031at 92.113 kb on - strand, within GFF6031at 92.113 kb on - strand, within GFF6031at 92.299 kb on - strandat 92.528 kb on + strand, within GFF6032at 92.528 kb on + strand, within GFF6032at 92.528 kb on + strand, within GFF6032at 92.528 kb on + strand, within GFF6032at 92.528 kb on + strand, within GFF6032at 92.528 kb on + strand, within GFF6032at 92.874 kb on - strand, within GFF6032at 92.874 kb on - strand, within GFF6032at 92.874 kb on - strand, within GFF6032at 92.874 kb on - strand, within GFF6032at 92.874 kb on - strand, within GFF6032at 92.874 kb on - strand, within GFF6032at 92.874 kb on - strand, within GFF6032at 92.876 kb on + strand, within GFF6032at 92.876 kb on + strand, within GFF6032at 92.876 kb on + strand, within GFF6032at 92.876 kb on + strand, within GFF6032at 92.876 kb on + strand, within GFF6032at 92.877 kb on - strand, within GFF6032at 92.877 kb on - strand, within GFF6032at 92.879 kb on + strand, within GFF6032at 92.879 kb on + strand, within GFF6032at 92.879 kb on + strand, within GFF6032at 92.880 kb on - strand, within GFF6032at 92.880 kb on - strand, within GFF6032at 92.880 kb on - strand, within GFF6032at 92.880 kb on - strand, within GFF6032at 93.065 kb on + strand, within GFF6032at 93.066 kb on - strand, within GFF6032

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1
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90,622 + -0.6
90,622 + +0.0
90,622 + -0.3
90,622 + -0.4
90,677 + -0.3
90,755 + GFF6030 0.12 +0.5
90,755 + GFF6030 0.12 -0.8
90,756 - GFF6030 0.12 -0.1
90,756 - GFF6030 0.12 +0.4
90,756 - GFF6030 0.12 +0.7
90,756 - GFF6030 0.12 +0.0
91,064 + GFF6030 0.51 -1.5
91,064 + GFF6030 0.51 -0.1
91,064 + GFF6030 0.51 -1.0
91,064 + GFF6030 0.51 -1.7
91,065 - GFF6030 0.52 -0.5
91,065 - GFF6030 0.52 +0.2
91,065 - GFF6030 0.52 -0.5
91,464 + +0.4
91,465 - -0.4
91,465 - -1.1
91,465 - -0.2
91,530 + GFF6031 0.11 +0.0
91,530 + GFF6031 0.11 -1.9
91,531 - GFF6031 0.11 -0.7
91,531 - GFF6031 0.11 -0.6
91,531 - GFF6031 0.11 -1.5
91,531 - GFF6031 0.11 +0.1
91,746 + GFF6031 0.39 -0.4
91,767 + GFF6031 0.42 -0.8
91,767 + GFF6031 0.42 -1.1
91,794 + GFF6031 0.45 -0.8
91,794 + GFF6031 0.45 -0.1
91,794 + GFF6031 0.45 +0.5
91,795 - GFF6031 0.45 -0.7
91,795 - GFF6031 0.45 -0.1
91,795 - GFF6031 0.45 -0.5
92,007 + GFF6031 0.72 -0.8
92,049 + GFF6031 0.78 +0.1
92,049 + GFF6031 0.78 -0.5
92,050 - GFF6031 0.78 +0.2
92,050 - GFF6031 0.78 -1.8
92,112 + GFF6031 0.86 -1.1
92,113 - GFF6031 0.86 -1.1
92,113 - GFF6031 0.86 -0.6
92,299 - -0.8
92,528 + GFF6032 0.24 -1.9
92,528 + GFF6032 0.24 +0.7
92,528 + GFF6032 0.24 +1.8
92,528 + GFF6032 0.24 -0.8
92,528 + GFF6032 0.24 +0.2
92,528 + GFF6032 0.24 -0.8
92,874 - GFF6032 0.52 -0.3
92,874 - GFF6032 0.52 -1.3
92,874 - GFF6032 0.52 +0.9
92,874 - GFF6032 0.52 -0.2
92,874 - GFF6032 0.52 +0.9
92,874 - GFF6032 0.52 -1.7
92,874 - GFF6032 0.52 +0.7
92,876 + GFF6032 0.52 -0.6
92,876 + GFF6032 0.52 +0.9
92,876 + GFF6032 0.52 +0.8
92,876 + GFF6032 0.52 -1.1
92,876 + GFF6032 0.52 -0.2
92,877 - GFF6032 0.53 -0.3
92,877 - GFF6032 0.53 -0.3
92,879 + GFF6032 0.53 -0.4
92,879 + GFF6032 0.53 -0.7
92,879 + GFF6032 0.53 -0.2
92,880 - GFF6032 0.53 +0.5
92,880 - GFF6032 0.53 -0.5
92,880 - GFF6032 0.53 -1.6
92,880 - GFF6032 0.53 -0.7
93,065 + GFF6032 0.68 -1.2
93,066 - GFF6032 0.68 +0.5

Or see this region's nucleotide sequence