Strain Fitness in Variovorax sp. SCN45 around GFF6022

Experiment: Community=Locust bean gum; Passage=1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=1
83,665	+				-0.8
83,676	+				-0.5
83,677	-				-0.4
83,677	-				+0.1
83,677	-				+0.9
83,786	+				+0.6
83,786	+				-1.8
83,786	+				+0.2
83,800	+				-0.1
83,895	+		GFF6022	0.14	+1.2
83,913	+		GFF6022	0.16	+0.5
83,914	-		GFF6022	0.17	+1.5
83,914	-		GFF6022	0.17	-0.1
83,979	+		GFF6022	0.24	+1.5
83,980	-		GFF6022	0.24	-1.1
83,991	+		GFF6022	0.25	-0.1
83,991	+		GFF6022	0.25	-1.1
84,081	+		GFF6022	0.35	-1.7
84,081	+		GFF6022	0.35	+1.5
84,081	+		GFF6022	0.35	+0.5
84,081	+		GFF6022	0.35	-0.1
84,082	-		GFF6022	0.35	-0.1
84,082	-		GFF6022	0.35	+1.5
84,143	-		GFF6022	0.42	-0.1
84,408	+		GFF6022	0.72	-1.9
84,408	+		GFF6022	0.72	+0.8
84,408	+		GFF6022	0.72	-1.5
84,408	+		GFF6022	0.72	+0.5
84,408	+		GFF6022	0.72	+0.5
84,409	-		GFF6022	0.72	-0.5
84,409	-		GFF6022	0.72	-0.5
84,409	-		GFF6022	0.72	+0.5
84,409	-		GFF6022	0.72	+1.1
84,520	-		GFF6022	0.85	-0.1
84,526	-		GFF6022	0.85	-0.8
84,531	+		GFF6022	0.86	-0.1
84,531	+		GFF6022	0.86	+0.2
84,532	-		GFF6022	0.86	-0.8
84,532	-		GFF6022	0.86	+0.5
84,532	-		GFF6022	0.86	+2.1
84,532	-		GFF6022	0.86	+1.5
84,633	+				+0.5
84,633	+				-0.1
84,633	+				+1.5
84,981	+				+0.4
84,981	+				-0.6
84,982	-				+0.6
84,982	-				-0.6
84,982	-				+0.1
85,044	+		GFF6024	0.18	-1.9
85,044	+		GFF6024	0.18	-0.0
85,068	-		GFF6024	0.22	+0.9
85,068	-		GFF6024	0.22	+1.7
85,068	-		GFF6024	0.22	+0.6
85,109	+		GFF6024	0.29	-0.2
85,110	-		GFF6024	0.29	-1.4
85,110	-		GFF6024	0.29	-1.9
85,118	+		GFF6024	0.30	+0.2
85,118	+		GFF6024	0.30	+0.1
85,119	-		GFF6024	0.31	-1.1
85,169	+		GFF6024	0.39	-0.5
85,169	+		GFF6024	0.39	+0.6
85,205	+		GFF6024	0.45	-0.5
85,206	-		GFF6024	0.45	+0.7