Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6021 and GFF6022 are separated by 114 nucleotides GFF6022 and GFF6023 are separated by 66 nucleotides GFF6023 and GFF6024 overlap by 11 nucleotides GFF6024 and GFF6025 are separated by 63 nucleotides
GFF6021 - Valyl-tRNA synthetase (EC 6.1.1.9), at 80,772 to 83,651
GFF6021
GFF6022 - UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9), at 83,766 to 84,656
GFF6022
GFF6023 - UPF0033 protein RGE_33990, at 84,723 to 84,950
GFF6023
GFF6024 - Pyrophosphatase, MutT/nudix family (EC 3.6.1.-), at 84,940 to 85,524
GFF6024
GFF6025 - Cysteine synthase B (EC 2.5.1.47), at 85,588 to 86,490
GFF6025
Position (kb)
83
84
85 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 83.665 kb on + strand at 83.676 kb on + strand at 83.677 kb on - strand at 83.677 kb on - strand at 83.677 kb on - strand at 83.786 kb on + strand at 83.786 kb on + strand at 83.786 kb on + strand at 83.800 kb on + strand at 83.895 kb on + strand, within GFF6022 at 83.913 kb on + strand, within GFF6022 at 83.914 kb on - strand, within GFF6022 at 83.914 kb on - strand, within GFF6022 at 83.979 kb on + strand, within GFF6022 at 83.980 kb on - strand, within GFF6022 at 83.991 kb on + strand, within GFF6022 at 83.991 kb on + strand, within GFF6022 at 84.081 kb on + strand, within GFF6022 at 84.081 kb on + strand, within GFF6022 at 84.081 kb on + strand, within GFF6022 at 84.081 kb on + strand, within GFF6022 at 84.082 kb on - strand, within GFF6022 at 84.082 kb on - strand, within GFF6022 at 84.143 kb on - strand, within GFF6022 at 84.408 kb on + strand, within GFF6022 at 84.408 kb on + strand, within GFF6022 at 84.408 kb on + strand, within GFF6022 at 84.408 kb on + strand, within GFF6022 at 84.408 kb on + strand, within GFF6022 at 84.409 kb on - strand, within GFF6022 at 84.409 kb on - strand, within GFF6022 at 84.409 kb on - strand, within GFF6022 at 84.409 kb on - strand, within GFF6022 at 84.520 kb on - strand, within GFF6022 at 84.526 kb on - strand, within GFF6022 at 84.531 kb on + strand, within GFF6022 at 84.531 kb on + strand, within GFF6022 at 84.532 kb on - strand, within GFF6022 at 84.532 kb on - strand, within GFF6022 at 84.532 kb on - strand, within GFF6022 at 84.532 kb on - strand, within GFF6022 at 84.633 kb on + strand at 84.633 kb on + strand at 84.633 kb on + strand at 84.981 kb on + strand at 84.981 kb on + strand at 84.982 kb on - strand at 84.982 kb on - strand at 84.982 kb on - strand at 85.044 kb on + strand, within GFF6024 at 85.044 kb on + strand, within GFF6024 at 85.068 kb on - strand, within GFF6024 at 85.068 kb on - strand, within GFF6024 at 85.068 kb on - strand, within GFF6024 at 85.109 kb on + strand, within GFF6024 at 85.110 kb on - strand, within GFF6024 at 85.110 kb on - strand, within GFF6024 at 85.118 kb on + strand, within GFF6024 at 85.118 kb on + strand, within GFF6024 at 85.119 kb on - strand, within GFF6024 at 85.169 kb on + strand, within GFF6024 at 85.169 kb on + strand, within GFF6024 at 85.205 kb on + strand, within GFF6024 at 85.206 kb on - strand, within GFF6024
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 83,665 + -0.8 83,676 + -0.5 83,677 - -0.4 83,677 - +0.1 83,677 - +0.9 83,786 + +0.6 83,786 + -1.8 83,786 + +0.2 83,800 + -0.1 83,895 + GFF6022 0.14 +1.2 83,913 + GFF6022 0.16 +0.5 83,914 - GFF6022 0.17 +1.5 83,914 - GFF6022 0.17 -0.1 83,979 + GFF6022 0.24 +1.5 83,980 - GFF6022 0.24 -1.1 83,991 + GFF6022 0.25 -0.1 83,991 + GFF6022 0.25 -1.1 84,081 + GFF6022 0.35 -1.7 84,081 + GFF6022 0.35 +1.5 84,081 + GFF6022 0.35 +0.5 84,081 + GFF6022 0.35 -0.1 84,082 - GFF6022 0.35 -0.1 84,082 - GFF6022 0.35 +1.5 84,143 - GFF6022 0.42 -0.1 84,408 + GFF6022 0.72 -1.9 84,408 + GFF6022 0.72 +0.8 84,408 + GFF6022 0.72 -1.5 84,408 + GFF6022 0.72 +0.5 84,408 + GFF6022 0.72 +0.5 84,409 - GFF6022 0.72 -0.5 84,409 - GFF6022 0.72 -0.5 84,409 - GFF6022 0.72 +0.5 84,409 - GFF6022 0.72 +1.1 84,520 - GFF6022 0.85 -0.1 84,526 - GFF6022 0.85 -0.8 84,531 + GFF6022 0.86 -0.1 84,531 + GFF6022 0.86 +0.2 84,532 - GFF6022 0.86 -0.8 84,532 - GFF6022 0.86 +0.5 84,532 - GFF6022 0.86 +2.1 84,532 - GFF6022 0.86 +1.5 84,633 + +0.5 84,633 + -0.1 84,633 + +1.5 84,981 + +0.4 84,981 + -0.6 84,982 - +0.6 84,982 - -0.6 84,982 - +0.1 85,044 + GFF6024 0.18 -1.9 85,044 + GFF6024 0.18 -0.0 85,068 - GFF6024 0.22 +0.9 85,068 - GFF6024 0.22 +1.7 85,068 - GFF6024 0.22 +0.6 85,109 + GFF6024 0.29 -0.2 85,110 - GFF6024 0.29 -1.4 85,110 - GFF6024 0.29 -1.9 85,118 + GFF6024 0.30 +0.2 85,118 + GFF6024 0.30 +0.1 85,119 - GFF6024 0.31 -1.1 85,169 + GFF6024 0.39 -0.5 85,169 + GFF6024 0.39 +0.6 85,205 + GFF6024 0.45 -0.5 85,206 - GFF6024 0.45 +0.7
Or see this region's nucleotide sequence