Strain Fitness in Variovorax sp. SCN45 around GFF6022

Experiment: Community=Locust bean gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6021 and GFF6022 are separated by 114 nucleotidesGFF6022 and GFF6023 are separated by 66 nucleotidesGFF6023 and GFF6024 overlap by 11 nucleotidesGFF6024 and GFF6025 are separated by 63 nucleotides GFF6021 - Valyl-tRNA synthetase (EC 6.1.1.9), at 80,772 to 83,651 GFF6021 GFF6022 - UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9), at 83,766 to 84,656 GFF6022 GFF6023 - UPF0033 protein RGE_33990, at 84,723 to 84,950 GFF6023 GFF6024 - Pyrophosphatase, MutT/nudix family (EC 3.6.1.-), at 84,940 to 85,524 GFF6024 GFF6025 - Cysteine synthase B (EC 2.5.1.47), at 85,588 to 86,490 GFF6025 Position (kb) 83 84 85Strain fitness (log2 ratio) -2 -1 0 1 2at 83.665 kb on + strandat 83.676 kb on + strandat 83.677 kb on - strandat 83.677 kb on - strandat 83.677 kb on - strandat 83.786 kb on + strandat 83.786 kb on + strandat 83.786 kb on + strandat 83.800 kb on + strandat 83.895 kb on + strand, within GFF6022at 83.913 kb on + strand, within GFF6022at 83.914 kb on - strand, within GFF6022at 83.914 kb on - strand, within GFF6022at 83.979 kb on + strand, within GFF6022at 83.980 kb on - strand, within GFF6022at 83.991 kb on + strand, within GFF6022at 83.991 kb on + strand, within GFF6022at 84.081 kb on + strand, within GFF6022at 84.081 kb on + strand, within GFF6022at 84.081 kb on + strand, within GFF6022at 84.081 kb on + strand, within GFF6022at 84.082 kb on - strand, within GFF6022at 84.082 kb on - strand, within GFF6022at 84.143 kb on - strand, within GFF6022at 84.408 kb on + strand, within GFF6022at 84.408 kb on + strand, within GFF6022at 84.408 kb on + strand, within GFF6022at 84.408 kb on + strand, within GFF6022at 84.408 kb on + strand, within GFF6022at 84.409 kb on - strand, within GFF6022at 84.409 kb on - strand, within GFF6022at 84.409 kb on - strand, within GFF6022at 84.409 kb on - strand, within GFF6022at 84.520 kb on - strand, within GFF6022at 84.526 kb on - strand, within GFF6022at 84.531 kb on + strand, within GFF6022at 84.531 kb on + strand, within GFF6022at 84.532 kb on - strand, within GFF6022at 84.532 kb on - strand, within GFF6022at 84.532 kb on - strand, within GFF6022at 84.532 kb on - strand, within GFF6022at 84.633 kb on + strandat 84.633 kb on + strandat 84.633 kb on + strandat 84.981 kb on + strandat 84.981 kb on + strandat 84.982 kb on - strandat 84.982 kb on - strandat 84.982 kb on - strandat 85.044 kb on + strand, within GFF6024at 85.044 kb on + strand, within GFF6024at 85.068 kb on - strand, within GFF6024at 85.068 kb on - strand, within GFF6024at 85.068 kb on - strand, within GFF6024at 85.109 kb on + strand, within GFF6024at 85.110 kb on - strand, within GFF6024at 85.110 kb on - strand, within GFF6024at 85.118 kb on + strand, within GFF6024at 85.118 kb on + strand, within GFF6024at 85.119 kb on - strand, within GFF6024at 85.169 kb on + strand, within GFF6024at 85.169 kb on + strand, within GFF6024at 85.205 kb on + strand, within GFF6024at 85.206 kb on - strand, within GFF6024

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1
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83,665 + -0.8
83,676 + -0.5
83,677 - -0.4
83,677 - +0.1
83,677 - +0.9
83,786 + +0.6
83,786 + -1.8
83,786 + +0.2
83,800 + -0.1
83,895 + GFF6022 0.14 +1.2
83,913 + GFF6022 0.16 +0.5
83,914 - GFF6022 0.17 +1.5
83,914 - GFF6022 0.17 -0.1
83,979 + GFF6022 0.24 +1.5
83,980 - GFF6022 0.24 -1.1
83,991 + GFF6022 0.25 -0.1
83,991 + GFF6022 0.25 -1.1
84,081 + GFF6022 0.35 -1.7
84,081 + GFF6022 0.35 +1.5
84,081 + GFF6022 0.35 +0.5
84,081 + GFF6022 0.35 -0.1
84,082 - GFF6022 0.35 -0.1
84,082 - GFF6022 0.35 +1.5
84,143 - GFF6022 0.42 -0.1
84,408 + GFF6022 0.72 -1.9
84,408 + GFF6022 0.72 +0.8
84,408 + GFF6022 0.72 -1.5
84,408 + GFF6022 0.72 +0.5
84,408 + GFF6022 0.72 +0.5
84,409 - GFF6022 0.72 -0.5
84,409 - GFF6022 0.72 -0.5
84,409 - GFF6022 0.72 +0.5
84,409 - GFF6022 0.72 +1.1
84,520 - GFF6022 0.85 -0.1
84,526 - GFF6022 0.85 -0.8
84,531 + GFF6022 0.86 -0.1
84,531 + GFF6022 0.86 +0.2
84,532 - GFF6022 0.86 -0.8
84,532 - GFF6022 0.86 +0.5
84,532 - GFF6022 0.86 +2.1
84,532 - GFF6022 0.86 +1.5
84,633 + +0.5
84,633 + -0.1
84,633 + +1.5
84,981 + +0.4
84,981 + -0.6
84,982 - +0.6
84,982 - -0.6
84,982 - +0.1
85,044 + GFF6024 0.18 -1.9
85,044 + GFF6024 0.18 -0.0
85,068 - GFF6024 0.22 +0.9
85,068 - GFF6024 0.22 +1.7
85,068 - GFF6024 0.22 +0.6
85,109 + GFF6024 0.29 -0.2
85,110 - GFF6024 0.29 -1.4
85,110 - GFF6024 0.29 -1.9
85,118 + GFF6024 0.30 +0.2
85,118 + GFF6024 0.30 +0.1
85,119 - GFF6024 0.31 -1.1
85,169 + GFF6024 0.39 -0.5
85,169 + GFF6024 0.39 +0.6
85,205 + GFF6024 0.45 -0.5
85,206 - GFF6024 0.45 +0.7

Or see this region's nucleotide sequence