Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5986 and GFF5987 are separated by 67 nucleotides GFF5987 and GFF5988 are separated by 16 nucleotides GFF5988 and GFF5989 are separated by 12 nucleotides
GFF5986 - hypothetical protein, at 40,168 to 40,761
GFF5986
GFF5987 - Response regulator BaeR, at 40,829 to 41,536
GFF5987
GFF5988 - Sensory histidine kinase BaeS, at 41,553 to 43,034
GFF5988
GFF5989 - RND efflux system, membrane fusion protein, at 43,047 to 44,291
GFF5989
Position (kb) 41
42
43
44 Strain fitness (log2 ratio) -2
-1
0
1 at 40.633 kb on + strand, within GFF5986 at 40.633 kb on + strand, within GFF5986 at 40.633 kb on + strand, within GFF5986 at 40.633 kb on + strand, within GFF5986 at 40.699 kb on - strand, within GFF5986 at 40.699 kb on - strand, within GFF5986 at 40.699 kb on - strand, within GFF5986 at 40.699 kb on - strand, within GFF5986 at 40.774 kb on + strand at 40.775 kb on - strand at 40.846 kb on + strand at 40.846 kb on + strand at 40.847 kb on - strand at 40.847 kb on - strand at 41.086 kb on + strand, within GFF5987 at 41.086 kb on + strand, within GFF5987 at 41.087 kb on - strand, within GFF5987 at 41.088 kb on + strand, within GFF5987 at 41.088 kb on + strand, within GFF5987 at 41.088 kb on + strand, within GFF5987 at 41.205 kb on + strand, within GFF5987 at 41.205 kb on + strand, within GFF5987 at 41.206 kb on - strand, within GFF5987 at 41.439 kb on + strand, within GFF5987 at 41.439 kb on + strand, within GFF5987 at 41.440 kb on - strand, within GFF5987 at 41.833 kb on + strand, within GFF5988 at 42.957 kb on - strand at 42.957 kb on - strand at 43.398 kb on + strand, within GFF5989 at 43.398 kb on + strand, within GFF5989 at 43.398 kb on + strand, within GFF5989 at 43.398 kb on + strand, within GFF5989 at 43.399 kb on - strand, within GFF5989 at 43.980 kb on + strand, within GFF5989 at 43.980 kb on + strand, within GFF5989 at 43.980 kb on + strand, within GFF5989 at 43.980 kb on + strand, within GFF5989 at 43.980 kb on + strand, within GFF5989 at 43.981 kb on - strand, within GFF5989 at 43.981 kb on - strand, within GFF5989
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 40,633 + GFF5986 0.78 -0.9 40,633 + GFF5986 0.78 -0.6 40,633 + GFF5986 0.78 -0.2 40,633 + GFF5986 0.78 -0.0 40,699 - GFF5986 0.89 -0.3 40,699 - GFF5986 0.89 +0.0 40,699 - GFF5986 0.89 -1.3 40,699 - GFF5986 0.89 -1.8 40,774 + -0.4 40,775 - -0.3 40,846 + +0.4 40,846 + +0.9 40,847 - -0.5 40,847 - +1.1 41,086 + GFF5987 0.36 -0.0 41,086 + GFF5987 0.36 +1.5 41,087 - GFF5987 0.36 -0.7 41,088 + GFF5987 0.37 +0.1 41,088 + GFF5987 0.37 +0.4 41,088 + GFF5987 0.37 +0.3 41,205 + GFF5987 0.53 -1.1 41,205 + GFF5987 0.53 -0.4 41,206 - GFF5987 0.53 -0.2 41,439 + GFF5987 0.86 +0.5 41,439 + GFF5987 0.86 -0.1 41,440 - GFF5987 0.86 +0.7 41,833 + GFF5988 0.19 +0.5 42,957 - +0.6 42,957 - -0.2 43,398 + GFF5989 0.28 -0.6 43,398 + GFF5989 0.28 -0.7 43,398 + GFF5989 0.28 +0.1 43,398 + GFF5989 0.28 +0.1 43,399 - GFF5989 0.28 +1.4 43,980 + GFF5989 0.75 -0.5 43,980 + GFF5989 0.75 +0.2 43,980 + GFF5989 0.75 +1.5 43,980 + GFF5989 0.75 -0.1 43,980 + GFF5989 0.75 -0.1 43,981 - GFF5989 0.75 +1.5 43,981 - GFF5989 0.75 +0.2
Or see this region's nucleotide sequence