Strain Fitness in Variovorax sp. SCN45 around GFF5947

Experiment: Community=Locust bean gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5947 and GFF5948 are separated by 22 nucleotidesGFF5948 and GFF5949 are separated by 3 nucleotides GFF5947 - Large extracellular alpha-helical protein, at 94 to 6,120 GFF5947 GFF5948 - hypothetical protein, at 6,143 to 6,790 GFF5948 GFF5949 - Glyoxalase family protein, at 6,794 to 7,207 GFF5949 Position (kb) 0 1 2 3 4 5 6 7Strain fitness (log2 ratio) -2 -1 0 1at 0.060 kb on + strandat 0.075 kb on + strandat 0.075 kb on + strandat 0.086 kb on - strandat 0.478 kb on + strandat 0.478 kb on + strandat 0.479 kb on - strandat 0.479 kb on - strandat 0.479 kb on - strandat 0.493 kb on + strandat 0.493 kb on + strandat 0.493 kb on + strandat 0.494 kb on - strandat 0.494 kb on - strandat 0.494 kb on - strandat 0.751 kb on + strand, within GFF5947at 1.030 kb on + strand, within GFF5947at 1.030 kb on + strand, within GFF5947at 1.030 kb on + strand, within GFF5947at 1.030 kb on + strand, within GFF5947at 1.031 kb on - strand, within GFF5947at 1.031 kb on - strand, within GFF5947at 1.369 kb on + strand, within GFF5947at 1.369 kb on + strand, within GFF5947at 1.369 kb on + strand, within GFF5947at 1.369 kb on + strand, within GFF5947at 1.369 kb on + strand, within GFF5947at 1.369 kb on + strand, within GFF5947at 1.369 kb on + strand, within GFF5947at 1.369 kb on + strand, within GFF5947at 1.369 kb on + strand, within GFF5947at 1.370 kb on - strand, within GFF5947at 1.370 kb on - strand, within GFF5947at 1.370 kb on - strand, within GFF5947at 1.370 kb on - strand, within GFF5947at 1.630 kb on + strand, within GFF5947at 1.631 kb on - strand, within GFF5947at 1.651 kb on + strand, within GFF5947at 1.651 kb on + strand, within GFF5947at 1.651 kb on + strand, within GFF5947at 1.651 kb on + strand, within GFF5947at 1.651 kb on + strand, within GFF5947at 1.651 kb on + strand, within GFF5947at 1.651 kb on + strand, within GFF5947at 1.651 kb on + strand, within GFF5947at 1.651 kb on + strand, within GFF5947at 1.652 kb on - strand, within GFF5947at 1.652 kb on - strand, within GFF5947at 1.652 kb on - strand, within GFF5947at 1.652 kb on - strand, within GFF5947at 1.885 kb on + strand, within GFF5947at 1.885 kb on + strand, within GFF5947at 2.278 kb on + strand, within GFF5947at 2.279 kb on - strand, within GFF5947at 2.356 kb on + strand, within GFF5947at 2.357 kb on - strand, within GFF5947at 2.357 kb on - strand, within GFF5947at 2.491 kb on + strand, within GFF5947at 2.491 kb on + strand, within GFF5947at 2.491 kb on + strand, within GFF5947at 2.492 kb on - strand, within GFF5947at 2.492 kb on - strand, within GFF5947at 2.492 kb on - strand, within GFF5947at 2.492 kb on - strand, within GFF5947at 2.573 kb on - strand, within GFF5947at 2.804 kb on - strand, within GFF5947at 3.035 kb on - strand, within GFF5947at 3.035 kb on - strand, within GFF5947at 3.035 kb on - strand, within GFF5947at 3.208 kb on + strand, within GFF5947at 3.286 kb on + strand, within GFF5947at 3.286 kb on + strand, within GFF5947at 3.286 kb on + strand, within GFF5947at 3.286 kb on + strand, within GFF5947at 3.286 kb on + strand, within GFF5947at 3.287 kb on - strand, within GFF5947at 3.287 kb on - strand, within GFF5947at 3.454 kb on + strand, within GFF5947at 3.454 kb on + strand, within GFF5947at 3.502 kb on + strand, within GFF5947at 3.503 kb on - strand, within GFF5947at 3.560 kb on - strand, within GFF5947at 3.575 kb on - strand, within GFF5947at 3.575 kb on - strand, within GFF5947at 3.575 kb on - strand, within GFF5947at 3.575 kb on - strand, within GFF5947at 4.711 kb on + strand, within GFF5947at 4.711 kb on + strand, within GFF5947at 4.738 kb on + strand, within GFF5947at 4.738 kb on + strand, within GFF5947at 4.738 kb on + strand, within GFF5947at 4.739 kb on - strand, within GFF5947at 4.739 kb on - strand, within GFF5947at 4.792 kb on + strand, within GFF5947at 5.189 kb on - strand, within GFF5947at 5.189 kb on - strand, within GFF5947at 5.695 kb on + strandat 5.747 kb on - strandat 5.747 kb on - strandat 5.747 kb on - strandat 5.956 kb on + strandat 5.957 kb on - strandat 5.957 kb on - strandat 5.959 kb on + strandat 5.959 kb on + strandat 5.960 kb on - strandat 5.960 kb on - strandat 5.965 kb on + strandat 5.966 kb on - strandat 5.966 kb on - strandat 5.995 kb on + strandat 5.995 kb on + strandat 5.995 kb on + strandat 5.995 kb on + strandat 5.995 kb on + strandat 5.996 kb on - strandat 5.996 kb on - strandat 6.058 kb on + strandat 6.059 kb on - strandat 6.059 kb on - strandat 6.118 kb on + strandat 6.119 kb on - strandat 6.329 kb on + strand, within GFF5948at 6.344 kb on + strand, within GFF5948at 6.345 kb on - strand, within GFF5948at 6.359 kb on + strand, within GFF5948at 6.452 kb on + strand, within GFF5948at 6.452 kb on + strand, within GFF5948at 6.452 kb on + strand, within GFF5948at 6.453 kb on - strand, within GFF5948at 6.453 kb on - strand, within GFF5948at 6.453 kb on - strand, within GFF5948at 6.453 kb on - strand, within GFF5948at 6.453 kb on - strand, within GFF5948at 6.455 kb on - strand, within GFF5948at 6.455 kb on - strand, within GFF5948at 6.500 kb on + strand, within GFF5948at 6.501 kb on - strand, within GFF5948at 6.501 kb on - strand, within GFF5948at 6.531 kb on - strand, within GFF5948at 6.716 kb on + strand, within GFF5948at 6.717 kb on - strand, within GFF5948at 6.717 kb on - strand, within GFF5948

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1
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60 + -0.4
75 + -2.7
75 + +0.0
86 - +1.5
478 + -2.3
478 + -0.2
479 - +1.0
479 - +0.5
479 - -0.1
493 + +0.4
493 + -0.6
493 + -1.0
494 - -0.3
494 - +0.3
494 - -0.4
751 + GFF5947 0.11 -0.8
1,030 + GFF5947 0.16 -0.4
1,030 + GFF5947 0.16 +0.0
1,030 + GFF5947 0.16 -2.2
1,030 + GFF5947 0.16 +0.3
1,031 - GFF5947 0.16 -0.2
1,031 - GFF5947 0.16 -2.1
1,369 + GFF5947 0.21 -0.8
1,369 + GFF5947 0.21 -0.9
1,369 + GFF5947 0.21 +0.5
1,369 + GFF5947 0.21 +1.0
1,369 + GFF5947 0.21 +0.1
1,369 + GFF5947 0.21 -0.7
1,369 + GFF5947 0.21 +1.0
1,369 + GFF5947 0.21 +0.5
1,369 + GFF5947 0.21 -0.1
1,370 - GFF5947 0.21 +0.9
1,370 - GFF5947 0.21 +0.2
1,370 - GFF5947 0.21 -1.1
1,370 - GFF5947 0.21 -1.6
1,630 + GFF5947 0.25 +0.5
1,631 - GFF5947 0.26 -1.3
1,651 + GFF5947 0.26 +0.0
1,651 + GFF5947 0.26 -0.2
1,651 + GFF5947 0.26 +0.3
1,651 + GFF5947 0.26 +0.0
1,651 + GFF5947 0.26 -0.3
1,651 + GFF5947 0.26 -0.9
1,651 + GFF5947 0.26 -0.3
1,651 + GFF5947 0.26 -0.8
1,651 + GFF5947 0.26 +0.0
1,652 - GFF5947 0.26 -0.3
1,652 - GFF5947 0.26 -0.9
1,652 - GFF5947 0.26 -0.1
1,652 - GFF5947 0.26 +0.3
1,885 + GFF5947 0.30 -0.1
1,885 + GFF5947 0.30 -1.1
2,278 + GFF5947 0.36 +0.2
2,279 - GFF5947 0.36 -0.4
2,356 + GFF5947 0.38 +0.7
2,357 - GFF5947 0.38 -0.4
2,357 - GFF5947 0.38 -0.3
2,491 + GFF5947 0.40 -1.1
2,491 + GFF5947 0.40 -0.5
2,491 + GFF5947 0.40 -1.1
2,492 - GFF5947 0.40 -0.3
2,492 - GFF5947 0.40 -0.8
2,492 - GFF5947 0.40 -1.7
2,492 - GFF5947 0.40 -0.4
2,573 - GFF5947 0.41 -1.2
2,804 - GFF5947 0.45 +0.2
3,035 - GFF5947 0.49 -0.5
3,035 - GFF5947 0.49 +0.5
3,035 - GFF5947 0.49 +0.2
3,208 + GFF5947 0.52 +0.4
3,286 + GFF5947 0.53 -0.4
3,286 + GFF5947 0.53 -0.6
3,286 + GFF5947 0.53 -0.8
3,286 + GFF5947 0.53 -0.3
3,286 + GFF5947 0.53 +0.1
3,287 - GFF5947 0.53 -0.6
3,287 - GFF5947 0.53 -0.7
3,454 + GFF5947 0.56 -1.7
3,454 + GFF5947 0.56 -0.1
3,502 + GFF5947 0.57 +0.5
3,503 - GFF5947 0.57 +0.6
3,560 - GFF5947 0.58 -0.7
3,575 - GFF5947 0.58 -0.7
3,575 - GFF5947 0.58 -0.3
3,575 - GFF5947 0.58 -0.3
3,575 - GFF5947 0.58 -0.3
4,711 + GFF5947 0.77 -0.6
4,711 + GFF5947 0.77 -0.6
4,738 + GFF5947 0.77 -0.3
4,738 + GFF5947 0.77 +1.2
4,738 + GFF5947 0.77 -0.4
4,739 - GFF5947 0.77 +0.1
4,739 - GFF5947 0.77 -0.2
4,792 + GFF5947 0.78 +0.5
5,189 - GFF5947 0.85 -0.2
5,189 - GFF5947 0.85 -0.7
5,695 + -0.2
5,747 - -1.7
5,747 - -0.5
5,747 - -0.6
5,956 + -1.8
5,957 - -0.1
5,957 - -0.0
5,959 + -2.2
5,959 + -0.4
5,960 - -0.3
5,960 - -0.3
5,965 + +0.2
5,966 - -0.2
5,966 - -0.3
5,995 + +0.4
5,995 + +0.0
5,995 + -0.9
5,995 + -0.5
5,995 + -0.3
5,996 - -0.3
5,996 - -0.7
6,058 + +0.4
6,059 - +0.5
6,059 - -1.3
6,118 + -1.1
6,119 - +0.4
6,329 + GFF5948 0.29 +0.9
6,344 + GFF5948 0.31 +0.5
6,345 - GFF5948 0.31 +0.2
6,359 + GFF5948 0.33 -0.0
6,452 + GFF5948 0.48 -0.7
6,452 + GFF5948 0.48 -0.2
6,452 + GFF5948 0.48 -1.3
6,453 - GFF5948 0.48 -0.4
6,453 - GFF5948 0.48 +0.0
6,453 - GFF5948 0.48 -0.4
6,453 - GFF5948 0.48 -1.8
6,453 - GFF5948 0.48 -0.4
6,455 - GFF5948 0.48 -0.1
6,455 - GFF5948 0.48 +0.9
6,500 + GFF5948 0.55 -0.1
6,501 - GFF5948 0.55 -0.1
6,501 - GFF5948 0.55 -0.2
6,531 - GFF5948 0.60 -1.2
6,716 + GFF5948 0.88 +0.5
6,717 - GFF5948 0.89 -1.2
6,717 - GFF5948 0.89 +0.8

Or see this region's nucleotide sequence