Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5918 and GFF5919 are separated by 150 nucleotides GFF5919 and GFF5920 are separated by 94 nucleotides GFF5920 and GFF5921 are separated by 31 nucleotides
GFF5918 - T6SS component TssC (ImpC/VipB), at 132,965 to 134,458
GFF5918
GFF5919 - KEGG: type VI secretion system secreted protein Hcp, at 134,609 to 135,082
GFF5919
GFF5920 - no description, at 135,177 to 136,046
GFF5920
GFF5921 - T6SS protein serine/threonine phosphatase PppA, at 136,078 to 136,881
GFF5921
Position (kb) 134
135
136 Strain fitness (log2 ratio) -1
0
1
2
3 at 133.631 kb on + strand, within GFF5918 at 133.673 kb on + strand, within GFF5918 at 133.787 kb on + strand, within GFF5918 at 133.788 kb on - strand, within GFF5918 at 133.788 kb on - strand, within GFF5918 at 133.839 kb on - strand, within GFF5918 at 133.839 kb on - strand, within GFF5918 at 134.252 kb on + strand, within GFF5918 at 134.252 kb on + strand, within GFF5918 at 134.253 kb on - strand, within GFF5918 at 134.358 kb on - strand at 134.388 kb on - strand at 134.888 kb on + strand, within GFF5919 at 135.328 kb on - strand, within GFF5920 at 135.516 kb on + strand, within GFF5920 at 135.595 kb on - strand, within GFF5920 at 135.609 kb on + strand, within GFF5920 at 135.802 kb on - strand, within GFF5920 at 135.802 kb on - strand, within GFF5920 at 135.802 kb on - strand, within GFF5920 at 135.802 kb on - strand, within GFF5920 at 135.804 kb on + strand, within GFF5920 at 135.804 kb on + strand, within GFF5920 at 135.804 kb on + strand, within GFF5920 at 135.805 kb on - strand, within GFF5920 at 135.843 kb on + strand, within GFF5920 at 135.844 kb on - strand, within GFF5920 at 135.844 kb on - strand, within GFF5920
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 133,631 + GFF5918 0.45 +1.1 133,673 + GFF5918 0.47 +0.2 133,787 + GFF5918 0.55 -0.2 133,788 - GFF5918 0.55 -0.9 133,788 - GFF5918 0.55 -0.7 133,839 - GFF5918 0.59 +0.2 133,839 - GFF5918 0.59 +0.6 134,252 + GFF5918 0.86 -0.2 134,252 + GFF5918 0.86 -0.3 134,253 - GFF5918 0.86 +0.0 134,358 - -0.4 134,388 - +0.6 134,888 + GFF5919 0.59 -1.3 135,328 - GFF5920 0.17 +0.3 135,516 + GFF5920 0.39 +0.7 135,595 - GFF5920 0.48 -0.0 135,609 + GFF5920 0.50 -0.2 135,802 - GFF5920 0.72 +0.0 135,802 - GFF5920 0.72 -1.0 135,802 - GFF5920 0.72 +0.4 135,802 - GFF5920 0.72 -0.4 135,804 + GFF5920 0.72 +1.2 135,804 + GFF5920 0.72 +3.3 135,804 + GFF5920 0.72 -0.5 135,805 - GFF5920 0.72 +0.9 135,843 + GFF5920 0.77 +0.3 135,844 - GFF5920 0.77 +0.2 135,844 - GFF5920 0.77 +0.9
Or see this region's nucleotide sequence