Strain Fitness in Variovorax sp. SCN45 around GFF5896

Experiment: Community=Locust bean gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5893 and GFF5894 are separated by 5 nucleotidesGFF5894 and GFF5895 overlap by 4 nucleotidesGFF5895 and GFF5896 are separated by 2 nucleotidesGFF5896 and GFF5897 are separated by 33 nucleotidesGFF5897 and GFF5898 are separated by 162 nucleotidesGFF5898 and GFF5899 are separated by 14 nucleotides GFF5893 - Low-specificity L-threonine aldolase (EC 4.1.2.48), at 112,129 to 113,187 GFF5893 GFF5894 - Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85), at 113,193 to 113,777 GFF5894 GFF5895 - hypothetical protein, at 113,774 to 114,166 GFF5895 GFF5896 - Anthranilate synthase, aminase component (EC 4.1.3.27), at 114,169 to 115,671 GFF5896 GFF5897 - hypothetical protein, at 115,705 to 115,857 GFF5897 GFF5898 - FIG026291: Hypothetical periplasmic protein, at 116,020 to 116,622 GFF5898 GFF5899 - Phosphoglycolate phosphatase (EC 3.1.3.18), at 116,637 to 117,338 GFF5899 Position (kb) 114 115 116Strain fitness (log2 ratio) -1 0 1 2 3at 113.752 kb on + strandat 113.753 kb on - strandat 113.753 kb on - strandat 113.753 kb on - strandat 113.961 kb on + strand, within GFF5895at 113.961 kb on + strand, within GFF5895at 113.989 kb on - strand, within GFF5895at 113.989 kb on - strand, within GFF5895at 113.989 kb on - strand, within GFF5895at 113.989 kb on - strand, within GFF5895at 113.989 kb on - strand, within GFF5895at 114.063 kb on + strand, within GFF5895at 114.064 kb on - strand, within GFF5895at 114.170 kb on + strandat 114.170 kb on + strandat 114.170 kb on + strandat 114.170 kb on + strandat 114.170 kb on + strandat 114.171 kb on - strandat 114.171 kb on - strandat 114.171 kb on - strandat 114.171 kb on - strandat 114.171 kb on - strandat 114.353 kb on + strand, within GFF5896at 114.354 kb on - strand, within GFF5896at 114.354 kb on - strand, within GFF5896at 114.362 kb on + strand, within GFF5896at 114.532 kb on - strand, within GFF5896at 114.833 kb on + strand, within GFF5896at 114.833 kb on + strand, within GFF5896at 114.833 kb on + strand, within GFF5896at 114.833 kb on + strand, within GFF5896at 114.833 kb on + strand, within GFF5896at 114.833 kb on + strand, within GFF5896at 114.833 kb on + strand, within GFF5896at 114.836 kb on + strand, within GFF5896at 114.836 kb on + strand, within GFF5896at 114.836 kb on + strand, within GFF5896at 114.836 kb on + strand, within GFF5896at 114.836 kb on + strand, within GFF5896at 114.836 kb on + strand, within GFF5896at 114.836 kb on + strand, within GFF5896at 114.837 kb on - strand, within GFF5896at 114.837 kb on - strand, within GFF5896at 114.837 kb on - strand, within GFF5896at 114.837 kb on - strand, within GFF5896at 114.837 kb on - strand, within GFF5896at 114.837 kb on - strand, within GFF5896at 114.837 kb on - strand, within GFF5896at 114.842 kb on + strand, within GFF5896at 114.842 kb on + strand, within GFF5896at 114.843 kb on - strand, within GFF5896at 114.843 kb on - strand, within GFF5896at 114.986 kb on + strand, within GFF5896at 115.134 kb on - strand, within GFF5896at 115.145 kb on + strand, within GFF5896at 115.146 kb on - strand, within GFF5896at 115.146 kb on - strand, within GFF5896at 115.274 kb on + strand, within GFF5896at 115.749 kb on + strand, within GFF5897at 115.749 kb on + strand, within GFF5897at 115.749 kb on + strand, within GFF5897at 115.749 kb on + strand, within GFF5897at 115.749 kb on + strand, within GFF5897at 115.749 kb on + strand, within GFF5897at 115.749 kb on + strand, within GFF5897at 115.749 kb on + strand, within GFF5897at 115.750 kb on - strand, within GFF5897at 115.750 kb on - strand, within GFF5897at 115.750 kb on - strand, within GFF5897at 115.750 kb on - strand, within GFF5897at 115.811 kb on + strand, within GFF5897at 115.811 kb on + strand, within GFF5897at 115.811 kb on + strand, within GFF5897at 115.811 kb on + strand, within GFF5897at 115.811 kb on + strand, within GFF5897at 115.811 kb on + strand, within GFF5897at 115.811 kb on + strand, within GFF5897at 115.811 kb on + strand, within GFF5897at 115.811 kb on + strand, within GFF5897at 115.811 kb on + strand, within GFF5897at 115.811 kb on + strand, within GFF5897at 115.811 kb on + strand, within GFF5897at 115.811 kb on + strand, within GFF5897at 115.811 kb on + strand, within GFF5897at 115.811 kb on + strand, within GFF5897at 115.811 kb on + strand, within GFF5897at 115.811 kb on + strand, within GFF5897at 115.812 kb on - strand, within GFF5897at 115.812 kb on - strand, within GFF5897at 115.812 kb on - strand, within GFF5897at 115.812 kb on - strand, within GFF5897at 115.812 kb on - strand, within GFF5897at 115.812 kb on - strand, within GFF5897at 115.812 kb on - strand, within GFF5897at 115.812 kb on - strand, within GFF5897at 115.812 kb on - strand, within GFF5897at 115.812 kb on - strand, within GFF5897at 115.812 kb on - strand, within GFF5897at 115.812 kb on - strand, within GFF5897at 115.812 kb on - strand, within GFF5897at 115.812 kb on - strand, within GFF5897at 115.812 kb on - strand, within GFF5897at 115.812 kb on - strand, within GFF5897at 115.817 kb on + strand, within GFF5897at 115.817 kb on + strand, within GFF5897at 115.817 kb on + strand, within GFF5897at 115.818 kb on - strand, within GFF5897at 115.892 kb on - strandat 115.965 kb on + strandat 115.966 kb on - strandat 116.191 kb on + strand, within GFF5898at 116.191 kb on + strand, within GFF5898at 116.191 kb on + strand, within GFF5898at 116.192 kb on - strand, within GFF5898at 116.212 kb on + strand, within GFF5898at 116.227 kb on + strand, within GFF5898at 116.227 kb on + strand, within GFF5898at 116.227 kb on + strand, within GFF5898at 116.227 kb on + strand, within GFF5898at 116.227 kb on + strand, within GFF5898at 116.227 kb on + strand, within GFF5898at 116.228 kb on - strand, within GFF5898at 116.228 kb on - strand, within GFF5898at 116.228 kb on - strand, within GFF5898at 116.228 kb on - strand, within GFF5898at 116.228 kb on - strand, within GFF5898at 116.228 kb on - strand, within GFF5898at 116.621 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1
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113,752 + -0.3
113,753 - -1.4
113,753 - -0.8
113,753 - +0.2
113,961 + GFF5895 0.48 +0.3
113,961 + GFF5895 0.48 -0.3
113,989 - GFF5895 0.55 -0.9
113,989 - GFF5895 0.55 +0.1
113,989 - GFF5895 0.55 -0.6
113,989 - GFF5895 0.55 -1.0
113,989 - GFF5895 0.55 +0.3
114,063 + GFF5895 0.74 -0.0
114,064 - GFF5895 0.74 +0.1
114,170 + -0.1
114,170 + -0.5
114,170 + +0.2
114,170 + -1.6
114,170 + -1.1
114,171 - +0.6
114,171 - -0.8
114,171 - +0.2
114,171 - +0.4
114,171 - -1.0
114,353 + GFF5896 0.12 +1.7
114,354 - GFF5896 0.12 -0.4
114,354 - GFF5896 0.12 -1.4
114,362 + GFF5896 0.13 -1.1
114,532 - GFF5896 0.24 -0.9
114,833 + GFF5896 0.44 +0.7
114,833 + GFF5896 0.44 +1.7
114,833 + GFF5896 0.44 +0.2
114,833 + GFF5896 0.44 -0.1
114,833 + GFF5896 0.44 +1.7
114,833 + GFF5896 0.44 +0.2
114,833 + GFF5896 0.44 +0.2
114,836 + GFF5896 0.44 -1.4
114,836 + GFF5896 0.44 +0.7
114,836 + GFF5896 0.44 +0.2
114,836 + GFF5896 0.44 +0.5
114,836 + GFF5896 0.44 -1.2
114,836 + GFF5896 0.44 -0.3
114,836 + GFF5896 0.44 -1.7
114,837 - GFF5896 0.44 +0.7
114,837 - GFF5896 0.44 -0.5
114,837 - GFF5896 0.44 +0.2
114,837 - GFF5896 0.44 +0.2
114,837 - GFF5896 0.44 +0.2
114,837 - GFF5896 0.44 +0.7
114,837 - GFF5896 0.44 +0.2
114,842 + GFF5896 0.45 +1.7
114,842 + GFF5896 0.45 -0.8
114,843 - GFF5896 0.45 +2.2
114,843 - GFF5896 0.45 +0.7
114,986 + GFF5896 0.54 -0.3
115,134 - GFF5896 0.64 -0.3
115,145 + GFF5896 0.65 +0.2
115,146 - GFF5896 0.65 +0.7
115,146 - GFF5896 0.65 -1.6
115,274 + GFF5896 0.74 -1.1
115,749 + GFF5897 0.29 -0.5
115,749 + GFF5897 0.29 +0.3
115,749 + GFF5897 0.29 -0.1
115,749 + GFF5897 0.29 -0.5
115,749 + GFF5897 0.29 +0.0
115,749 + GFF5897 0.29 +0.3
115,749 + GFF5897 0.29 -0.1
115,749 + GFF5897 0.29 -0.1
115,750 - GFF5897 0.29 +0.2
115,750 - GFF5897 0.29 -0.3
115,750 - GFF5897 0.29 -0.7
115,750 - GFF5897 0.29 -0.7
115,811 + GFF5897 0.69 +1.1
115,811 + GFF5897 0.69 -0.2
115,811 + GFF5897 0.69 +0.2
115,811 + GFF5897 0.69 +1.3
115,811 + GFF5897 0.69 -0.3
115,811 + GFF5897 0.69 -0.9
115,811 + GFF5897 0.69 -0.3
115,811 + GFF5897 0.69 +0.6
115,811 + GFF5897 0.69 +0.1
115,811 + GFF5897 0.69 -0.4
115,811 + GFF5897 0.69 -0.3
115,811 + GFF5897 0.69 -0.2
115,811 + GFF5897 0.69 +0.2
115,811 + GFF5897 0.69 -0.1
115,811 + GFF5897 0.69 -1.5
115,811 + GFF5897 0.69 -1.1
115,811 + GFF5897 0.69 -0.9
115,812 - GFF5897 0.70 -1.2
115,812 - GFF5897 0.70 +1.7
115,812 - GFF5897 0.70 -0.2
115,812 - GFF5897 0.70 +0.2
115,812 - GFF5897 0.70 +0.5
115,812 - GFF5897 0.70 +0.4
115,812 - GFF5897 0.70 -1.0
115,812 - GFF5897 0.70 -0.5
115,812 - GFF5897 0.70 -0.6
115,812 - GFF5897 0.70 -0.2
115,812 - GFF5897 0.70 +3.3
115,812 - GFF5897 0.70 -1.6
115,812 - GFF5897 0.70 +0.7
115,812 - GFF5897 0.70 +0.0
115,812 - GFF5897 0.70 -1.2
115,812 - GFF5897 0.70 -0.7
115,817 + GFF5897 0.73 -0.5
115,817 + GFF5897 0.73 -0.3
115,817 + GFF5897 0.73 +0.3
115,818 - GFF5897 0.74 -0.9
115,892 - -0.3
115,965 + -0.6
115,966 - -0.1
116,191 + GFF5898 0.28 -1.7
116,191 + GFF5898 0.28 +0.2
116,191 + GFF5898 0.28 -0.4
116,192 - GFF5898 0.29 -0.1
116,212 + GFF5898 0.32 -0.1
116,227 + GFF5898 0.34 -0.1
116,227 + GFF5898 0.34 -0.4
116,227 + GFF5898 0.34 -1.7
116,227 + GFF5898 0.34 -0.2
116,227 + GFF5898 0.34 -1.4
116,227 + GFF5898 0.34 -0.7
116,228 - GFF5898 0.34 +1.2
116,228 - GFF5898 0.34 -0.2
116,228 - GFF5898 0.34 -0.3
116,228 - GFF5898 0.34 +0.4
116,228 - GFF5898 0.34 +0.6
116,228 - GFF5898 0.34 +0.0
116,621 - -0.2

Or see this region's nucleotide sequence