Strain Fitness in Variovorax sp. SCN45 around GFF5843

Experiment: Community=Locust bean gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5842 and GFF5843 overlap by 4 nucleotidesGFF5843 and GFF5844 overlap by 4 nucleotides GFF5842 - ATP-dependent DNA helicase Rep, at 18,658 to 20,760 GFF5842 GFF5843 - hypothetical protein, at 20,757 to 21,236 GFF5843 GFF5844 - Phospholipase A1 (EC 3.1.1.32) (EC 3.1.1.4) @ Outer membrane phospholipase A, at 21,233 to 22,399 GFF5844 Position (kb) 20 21 22Strain fitness (log2 ratio) -1 0 1 2at 20.967 kb on + strand, within GFF5843at 20.968 kb on - strand, within GFF5843at 20.968 kb on - strand, within GFF5843at 21.567 kb on - strand, within GFF5844at 21.728 kb on + strand, within GFF5844at 21.729 kb on - strand, within GFF5844at 21.833 kb on + strand, within GFF5844at 21.834 kb on - strand, within GFF5844at 21.834 kb on - strand, within GFF5844at 21.835 kb on + strand, within GFF5844at 21.835 kb on + strand, within GFF5844at 21.835 kb on + strand, within GFF5844at 21.836 kb on - strand, within GFF5844at 21.836 kb on - strand, within GFF5844at 21.836 kb on - strand, within GFF5844at 21.836 kb on - strand, within GFF5844at 21.836 kb on - strand, within GFF5844at 21.917 kb on + strand, within GFF5844at 21.917 kb on + strand, within GFF5844at 21.917 kb on + strand, within GFF5844at 21.917 kb on + strand, within GFF5844at 21.917 kb on + strand, within GFF5844at 21.917 kb on + strand, within GFF5844at 21.917 kb on + strand, within GFF5844at 21.917 kb on + strand, within GFF5844at 21.917 kb on + strand, within GFF5844at 21.917 kb on + strand, within GFF5844at 21.917 kb on + strand, within GFF5844at 21.917 kb on + strand, within GFF5844at 21.917 kb on + strand, within GFF5844at 21.917 kb on + strand, within GFF5844at 21.917 kb on + strand, within GFF5844at 21.917 kb on + strand, within GFF5844at 21.917 kb on + strand, within GFF5844at 21.917 kb on + strand, within GFF5844at 21.918 kb on - strand, within GFF5844at 21.918 kb on - strand, within GFF5844at 21.918 kb on - strand, within GFF5844at 21.918 kb on - strand, within GFF5844at 21.918 kb on - strand, within GFF5844at 21.918 kb on - strand, within GFF5844at 21.918 kb on - strand, within GFF5844at 21.918 kb on - strand, within GFF5844at 21.918 kb on - strand, within GFF5844at 21.918 kb on - strand, within GFF5844at 21.918 kb on - strand, within GFF5844at 21.918 kb on - strand, within GFF5844at 21.918 kb on - strand, within GFF5844at 21.918 kb on - strand, within GFF5844at 21.918 kb on - strand, within GFF5844at 21.918 kb on - strand, within GFF5844at 21.918 kb on - strand, within GFF5844at 21.918 kb on - strand, within GFF5844at 21.918 kb on - strand, within GFF5844at 21.918 kb on - strand, within GFF5844at 21.918 kb on - strand, within GFF5844at 21.918 kb on - strand, within GFF5844at 21.918 kb on - strand, within GFF5844at 21.918 kb on - strand, within GFF5844at 21.918 kb on - strand, within GFF5844at 21.966 kb on - strand, within GFF5844at 22.037 kb on + strand, within GFF5844at 22.038 kb on - strand, within GFF5844at 22.038 kb on - strand, within GFF5844at 22.038 kb on - strand, within GFF5844at 22.145 kb on + strand, within GFF5844at 22.146 kb on - strand, within GFF5844at 22.146 kb on - strand, within GFF5844at 22.146 kb on - strand, within GFF5844

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1
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20,967 + GFF5843 0.44 -0.6
20,968 - GFF5843 0.44 -1.0
20,968 - GFF5843 0.44 -0.1
21,567 - GFF5844 0.29 -0.1
21,728 + GFF5844 0.42 -0.6
21,729 - GFF5844 0.43 -0.3
21,833 + GFF5844 0.51 +0.7
21,834 - GFF5844 0.51 -1.3
21,834 - GFF5844 0.51 +0.1
21,835 + GFF5844 0.52 -0.5
21,835 + GFF5844 0.52 +1.4
21,835 + GFF5844 0.52 -0.5
21,836 - GFF5844 0.52 -0.4
21,836 - GFF5844 0.52 +0.0
21,836 - GFF5844 0.52 +0.2
21,836 - GFF5844 0.52 -1.2
21,836 - GFF5844 0.52 +0.5
21,917 + GFF5844 0.59 +0.4
21,917 + GFF5844 0.59 -0.6
21,917 + GFF5844 0.59 -0.5
21,917 + GFF5844 0.59 -0.5
21,917 + GFF5844 0.59 +0.3
21,917 + GFF5844 0.59 -0.9
21,917 + GFF5844 0.59 +0.7
21,917 + GFF5844 0.59 -0.3
21,917 + GFF5844 0.59 +0.3
21,917 + GFF5844 0.59 -0.4
21,917 + GFF5844 0.59 -0.3
21,917 + GFF5844 0.59 -0.3
21,917 + GFF5844 0.59 +0.2
21,917 + GFF5844 0.59 -0.8
21,917 + GFF5844 0.59 -0.6
21,917 + GFF5844 0.59 +0.0
21,917 + GFF5844 0.59 -0.4
21,917 + GFF5844 0.59 +0.6
21,918 - GFF5844 0.59 -0.3
21,918 - GFF5844 0.59 -0.4
21,918 - GFF5844 0.59 -0.9
21,918 - GFF5844 0.59 +1.3
21,918 - GFF5844 0.59 +0.7
21,918 - GFF5844 0.59 +0.0
21,918 - GFF5844 0.59 +0.1
21,918 - GFF5844 0.59 +0.1
21,918 - GFF5844 0.59 +0.1
21,918 - GFF5844 0.59 +0.5
21,918 - GFF5844 0.59 +0.3
21,918 - GFF5844 0.59 -0.3
21,918 - GFF5844 0.59 +0.3
21,918 - GFF5844 0.59 -0.8
21,918 - GFF5844 0.59 +0.4
21,918 - GFF5844 0.59 -1.0
21,918 - GFF5844 0.59 -0.1
21,918 - GFF5844 0.59 -0.5
21,918 - GFF5844 0.59 +0.0
21,918 - GFF5844 0.59 -0.6
21,918 - GFF5844 0.59 +1.7
21,918 - GFF5844 0.59 -0.7
21,918 - GFF5844 0.59 -0.5
21,918 - GFF5844 0.59 -1.4
21,918 - GFF5844 0.59 -0.2
21,966 - GFF5844 0.63 -1.3
22,037 + GFF5844 0.69 -0.6
22,038 - GFF5844 0.69 -1.0
22,038 - GFF5844 0.69 +2.3
22,038 - GFF5844 0.69 -0.7
22,145 + GFF5844 0.78 -0.0
22,146 - GFF5844 0.78 +2.2
22,146 - GFF5844 0.78 +1.3
22,146 - GFF5844 0.78 +1.3

Or see this region's nucleotide sequence