Strain Fitness in Variovorax sp. SCN45 around GFF5843
Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Community=Locust bean gum; Passage=1 |
---|---|---|---|---|---|
remove | |||||
20,967 | + | GFF5843 | 0.44 | -0.6 | |
20,968 | - | GFF5843 | 0.44 | -1.0 | |
20,968 | - | GFF5843 | 0.44 | -0.1 | |
21,567 | - | GFF5844 | 0.29 | -0.1 | |
21,728 | + | GFF5844 | 0.42 | -0.6 | |
21,729 | - | GFF5844 | 0.43 | -0.3 | |
21,833 | + | GFF5844 | 0.51 | +0.7 | |
21,834 | - | GFF5844 | 0.51 | -1.3 | |
21,834 | - | GFF5844 | 0.51 | +0.1 | |
21,835 | + | GFF5844 | 0.52 | -0.5 | |
21,835 | + | GFF5844 | 0.52 | +1.4 | |
21,835 | + | GFF5844 | 0.52 | -0.5 | |
21,836 | - | GFF5844 | 0.52 | -0.4 | |
21,836 | - | GFF5844 | 0.52 | +0.0 | |
21,836 | - | GFF5844 | 0.52 | +0.2 | |
21,836 | - | GFF5844 | 0.52 | -1.2 | |
21,836 | - | GFF5844 | 0.52 | +0.5 | |
21,917 | + | GFF5844 | 0.59 | +0.4 | |
21,917 | + | GFF5844 | 0.59 | -0.6 | |
21,917 | + | GFF5844 | 0.59 | -0.5 | |
21,917 | + | GFF5844 | 0.59 | -0.5 | |
21,917 | + | GFF5844 | 0.59 | +0.3 | |
21,917 | + | GFF5844 | 0.59 | -0.9 | |
21,917 | + | GFF5844 | 0.59 | +0.7 | |
21,917 | + | GFF5844 | 0.59 | -0.3 | |
21,917 | + | GFF5844 | 0.59 | +0.3 | |
21,917 | + | GFF5844 | 0.59 | -0.4 | |
21,917 | + | GFF5844 | 0.59 | -0.3 | |
21,917 | + | GFF5844 | 0.59 | -0.3 | |
21,917 | + | GFF5844 | 0.59 | +0.2 | |
21,917 | + | GFF5844 | 0.59 | -0.8 | |
21,917 | + | GFF5844 | 0.59 | -0.6 | |
21,917 | + | GFF5844 | 0.59 | +0.0 | |
21,917 | + | GFF5844 | 0.59 | -0.4 | |
21,917 | + | GFF5844 | 0.59 | +0.6 | |
21,918 | - | GFF5844 | 0.59 | -0.3 | |
21,918 | - | GFF5844 | 0.59 | -0.4 | |
21,918 | - | GFF5844 | 0.59 | -0.9 | |
21,918 | - | GFF5844 | 0.59 | +1.3 | |
21,918 | - | GFF5844 | 0.59 | +0.7 | |
21,918 | - | GFF5844 | 0.59 | +0.0 | |
21,918 | - | GFF5844 | 0.59 | +0.1 | |
21,918 | - | GFF5844 | 0.59 | +0.1 | |
21,918 | - | GFF5844 | 0.59 | +0.1 | |
21,918 | - | GFF5844 | 0.59 | +0.5 | |
21,918 | - | GFF5844 | 0.59 | +0.3 | |
21,918 | - | GFF5844 | 0.59 | -0.3 | |
21,918 | - | GFF5844 | 0.59 | +0.3 | |
21,918 | - | GFF5844 | 0.59 | -0.8 | |
21,918 | - | GFF5844 | 0.59 | +0.4 | |
21,918 | - | GFF5844 | 0.59 | -1.0 | |
21,918 | - | GFF5844 | 0.59 | -0.1 | |
21,918 | - | GFF5844 | 0.59 | -0.5 | |
21,918 | - | GFF5844 | 0.59 | +0.0 | |
21,918 | - | GFF5844 | 0.59 | -0.6 | |
21,918 | - | GFF5844 | 0.59 | +1.7 | |
21,918 | - | GFF5844 | 0.59 | -0.7 | |
21,918 | - | GFF5844 | 0.59 | -0.5 | |
21,918 | - | GFF5844 | 0.59 | -1.4 | |
21,918 | - | GFF5844 | 0.59 | -0.2 | |
21,966 | - | GFF5844 | 0.63 | -1.3 | |
22,037 | + | GFF5844 | 0.69 | -0.6 | |
22,038 | - | GFF5844 | 0.69 | -1.0 | |
22,038 | - | GFF5844 | 0.69 | +2.3 | |
22,038 | - | GFF5844 | 0.69 | -0.7 | |
22,145 | + | GFF5844 | 0.78 | -0.0 | |
22,146 | - | GFF5844 | 0.78 | +2.2 | |
22,146 | - | GFF5844 | 0.78 | +1.3 | |
22,146 | - | GFF5844 | 0.78 | +1.3 |
Or see this region's nucleotide sequence