Strain Fitness in Variovorax sp. SCN45 around GFF5839

Experiment: Community=Locust bean gum; Passage=1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=1
15,630	+		GFF5838	0.28	+0.3
15,630	+		GFF5838	0.28	+2.3
15,630	+		GFF5838	0.28	-0.4
15,630	+		GFF5838	0.28	+0.3
15,630	+		GFF5838	0.28	-0.9
15,631	-		GFF5838	0.28	-0.7
15,822	+		GFF5838	0.49	-0.3
15,822	+		GFF5838	0.49	-2.0
15,822	+		GFF5838	0.49	+1.5
15,822	+		GFF5838	0.49	-0.6
15,822	+		GFF5838	0.49	+0.0
15,823	-		GFF5838	0.49	+0.1
15,823	-		GFF5838	0.49	-1.7
15,900	+		GFF5838	0.58	-0.3
15,900	+		GFF5838	0.58	-0.4
15,900	+		GFF5838	0.58	-0.4
15,900	+		GFF5838	0.58	-0.8
15,900	+		GFF5838	0.58	+0.5
15,960	+		GFF5838	0.64	+0.2
15,960	+		GFF5838	0.64	-0.9
15,960	+		GFF5838	0.64	+0.9
15,960	+		GFF5838	0.64	+0.3
15,960	+		GFF5838	0.64	+0.5
15,960	+		GFF5838	0.64	+1.0
15,960	+		GFF5838	0.64	+0.2
15,960	+		GFF5838	0.64	+0.4
15,960	+		GFF5838	0.64	-0.6
15,960	+		GFF5838	0.64	-0.2
15,960	+		GFF5838	0.64	+0.2
15,960	+		GFF5838	0.64	-1.1
15,960	+		GFF5838	0.64	+0.3
15,960	+		GFF5838	0.64	-0.5
15,960	+		GFF5838	0.64	-0.8
15,961	-		GFF5838	0.64	-0.4
15,961	-		GFF5838	0.64	+0.7
15,961	-		GFF5838	0.64	-0.5
15,961	-		GFF5838	0.64	+0.7
15,961	-		GFF5838	0.64	-0.7
15,961	-		GFF5838	0.64	-0.2
15,961	-		GFF5838	0.64	+0.3
15,961	-		GFF5838	0.64	+0.7
15,961	-		GFF5838	0.64	-1.3
15,961	-		GFF5838	0.64	+0.2
15,961	-		GFF5838	0.64	+1.7
15,961	-		GFF5838	0.64	-0.6
15,961	-		GFF5838	0.64	-0.6
15,961	-		GFF5838	0.64	-0.8
15,961	-		GFF5838	0.64	-0.6
15,961	-		GFF5838	0.64	-0.8
15,961	-		GFF5838	0.64	-1.7
15,961	-		GFF5838	0.64	+0.4
15,961	-		GFF5838	0.64	+0.7
15,961	-		GFF5838	0.64	-0.6
15,961	-		GFF5838	0.64	-0.3
15,961	-		GFF5838	0.64	-0.1
15,961	-		GFF5838	0.64	-3.0
15,961	-		GFF5838	0.64	+1.7
15,961	-		GFF5838	0.64	-0.6
15,966	+		GFF5838	0.65	-0.6
15,966	+		GFF5838	0.65	+1.7
15,966	+		GFF5838	0.65	+0.9
15,966	+		GFF5838	0.65	-0.2
15,967	-		GFF5838	0.65	-1.3
15,967	-		GFF5838	0.65	-0.7
15,967	-		GFF5838	0.65	+0.2
15,967	-		GFF5838	0.65	-0.0
15,967	-		GFF5838	0.65	-0.1
15,967	-		GFF5838	0.65	+0.3
15,972	+		GFF5838	0.65	+1.0
16,005	+		GFF5838	0.69	-1.3
16,005	+		GFF5838	0.69	+1.7
16,005	+		GFF5838	0.69	-1.3
16,005	+		GFF5838	0.69	-0.5
16,005	-		GFF5838	0.69	+0.0
16,006	-		GFF5838	0.69	+1.3
16,006	-		GFF5838	0.69	-0.1
16,006	-		GFF5838	0.69	-0.3
16,006	-		GFF5838	0.69	+0.5
16,006	-		GFF5838	0.69	+0.2
16,006	-		GFF5838	0.69	-0.8
16,006	-		GFF5838	0.69	-0.4
16,006	-		GFF5838	0.69	-1.1
16,006	-		GFF5838	0.69	-0.9
16,006	-		GFF5838	0.69	-1.1
16,065	+		GFF5838	0.76	+1.7
16,065	+		GFF5838	0.76	-0.1
16,065	+		GFF5838	0.76	-0.8
16,065	+		GFF5838	0.76	-0.3
16,066	-		GFF5838	0.76	+1.2
16,066	-		GFF5838	0.76	-1.4
16,066	-		GFF5838	0.76	-1.0
16,110	+		GFF5838	0.81	+0.2
16,110	+		GFF5838	0.81	-0.8
16,111	-		GFF5838	0.81	+0.0
16,113	+		GFF5838	0.81	+0.2
16,113	+		GFF5838	0.81	-0.4
16,113	+		GFF5838	0.81	+0.1
16,114	-		GFF5838	0.81	+3.0
16,114	-		GFF5838	0.81	-0.6
16,114	-		GFF5838	0.81	+0.4
16,114	-		GFF5838	0.81	-0.2
16,131	+		GFF5838	0.83	+0.4
16,131	+		GFF5838	0.83	-1.4
16,131	+		GFF5838	0.83	-0.6
16,131	+		GFF5838	0.83	-0.5
16,132	-		GFF5838	0.83	-0.4
16,132	-		GFF5838	0.83	+0.3
16,132	-		GFF5838	0.83	-1.1
16,132	-		GFF5838	0.83	+0.5
16,132	-		GFF5838	0.83	+0.2
16,132	-		GFF5838	0.83	+0.4
16,132	-		GFF5838	0.83	-0.3
16,200	+				-0.7
16,201	-				-0.1
16,201	-				-1.3
16,201	-				+0.2
16,201	-				-0.9
16,201	-				-0.3
16,236	+				+0.7
16,236	+				+0.7
16,236	+				-0.4
16,237	-				+0.4
16,237	-				+0.5
16,237	-				+1.7
16,311	+				-1.0
16,312	-				+0.3
16,312	-				-0.2
16,341	+		GFF5839	0.17	-0.4
16,342	-		GFF5839	0.17	-1.3
16,342	-		GFF5839	0.17	-0.8
16,342	-		GFF5839	0.17	+0.2
16,342	-		GFF5839	0.17	+0.2
16,505	+				-0.5
16,505	+				-0.1
16,505	+				+0.5
16,505	+				-0.3
16,506	-				-0.6
16,506	-				+0.7
16,506	-				-0.8
16,506	-				+0.5
16,506	-				-1.7
16,506	-				+0.4
16,506	-				+0.3
16,551	+				-0.7
16,551	+				+0.1
16,551	+				+1.0
16,551	+				+1.5
16,551	+				-0.1
16,552	-				-0.3
16,552	-				-0.5
16,552	-				+1.2
16,552	-				+0.7
16,552	-				+0.9
16,552	-				-0.1
16,552	-				+0.6
16,552	-				-0.6
16,552	-				-0.4
16,552	-				-0.3
16,602	-				+0.9
16,602	-				+1.3
16,626	-				-0.6
16,682	+				-0.8
16,682	+				-0.3
16,682	+				-0.2
16,683	-				+0.7
16,689	+				+0.7
16,690	-				+1.7
16,727	+				+1.7
16,727	+				-0.5
16,793	+				-0.3
16,793	+				-1.3
16,794	-				-1.0
16,794	-				+1.3
17,056	+		GFF5840	0.39	-0.4
17,371	+		GFF5840	0.85	-0.0
17,371	+		GFF5840	0.85	-0.8
17,371	+		GFF5840	0.85	-1.0
17,371	+		GFF5840	0.85	+0.2
17,371	+		GFF5840	0.85	-1.0
17,371	+		GFF5840	0.85	+0.1
17,371	+		GFF5840	0.85	+0.4
17,371	+		GFF5840	0.85	+0.7
17,371	+		GFF5840	0.85	+0.7
17,371	+		GFF5840	0.85	-0.7
17,371	+		GFF5840	0.85	-0.8
17,371	+		GFF5840	0.85	+0.3
17,372	-		GFF5840	0.85	+1.7
17,372	-		GFF5840	0.85	-0.6
17,372	-		GFF5840	0.85	-0.3
17,372	-		GFF5840	0.85	-0.4
17,372	-		GFF5840	0.85	-0.3
17,380	+		GFF5840	0.86	+0.2
17,380	+		GFF5840	0.86	+0.2
17,380	+		GFF5840	0.86	+0.0
17,380	+		GFF5840	0.86	+0.1
17,380	+		GFF5840	0.86	+1.3
17,380	+		GFF5840	0.86	+0.4
17,380	+		GFF5840	0.86	+0.7
17,380	+		GFF5840	0.86	-0.5
17,380	+		GFF5840	0.86	+2.7
17,380	+		GFF5840	0.86	-0.7
17,380	+		GFF5840	0.86	+0.1
17,380	+		GFF5840	0.86	+0.3
17,380	+		GFF5840	0.86	-1.8
17,380	+		GFF5840	0.86	+0.2
17,380	+		GFF5840	0.86	+0.2
17,381	-		GFF5840	0.87	+0.0
17,381	-		GFF5840	0.87	-0.8
17,381	-		GFF5840	0.87	-0.1
17,381	-		GFF5840	0.87	-0.4
17,381	-		GFF5840	0.87	+0.5
17,381	-		GFF5840	0.87	-0.3
17,381	-		GFF5840	0.87	-0.2
17,381	-		GFF5840	0.87	+0.5
17,381	-		GFF5840	0.87	-0.8
17,381	-		GFF5840	0.87	-1.6
17,381	-		GFF5840	0.87	+0.0
17,381	-		GFF5840	0.87	-0.3
17,381	-		GFF5840	0.87	+0.3
17,381	-		GFF5840	0.87	-1.9
17,381	-		GFF5840	0.87	+1.6
17,381	-		GFF5840	0.87	+0.5
17,381	-		GFF5840	0.87	-1.1
17,383	+		GFF5840	0.87	+1.7
17,383	+		GFF5840	0.87	+0.2
17,383	+		GFF5840	0.87	-0.7
17,384	-		GFF5840	0.87	+0.6
17,384	-		GFF5840	0.87	-0.4
17,384	-		GFF5840	0.87	+0.5
17,446	+				+0.6
17,446	+				+0.2
17,446	+				+0.5
17,447	-				-0.6
17,447	-				-0.1
17,447	-				-0.4
17,447	-				+0.4
17,447	-				-0.0