Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5817 and GFF5818 overlap by 4 nucleotides GFF5818 and GFF5819 are separated by 242 nucleotides GFF5819 and GFF5820 are separated by 246 nucleotides
GFF5817 - Two-component system sensor histidine kinase, at 196,372 to 197,745
GFF5817
GFF5818 - Two-component transcriptional response regulator, NarL/FixJ family, at 197,742 to 198,377
GFF5818
GFF5819 - no description, at 198,620 to 198,874
GFF5819
GFF5820 - hypothetical protein, at 199,121 to 199,843
GFF5820
Position (kb) 198
199 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 198.003 kb on + strand, within GFF5818 at 198.003 kb on + strand, within GFF5818 at 198.004 kb on - strand, within GFF5818 at 198.018 kb on + strand, within GFF5818 at 198.019 kb on - strand, within GFF5818 at 198.019 kb on - strand, within GFF5818 at 198.019 kb on - strand, within GFF5818 at 198.339 kb on + strand at 198.468 kb on + strand at 198.469 kb on - strand at 198.501 kb on + strand at 198.596 kb on + strand at 198.597 kb on - strand at 198.597 kb on - strand at 198.635 kb on - strand at 198.683 kb on - strand, within GFF5819 at 198.862 kb on + strand at 198.863 kb on - strand at 198.863 kb on - strand at 199.001 kb on + strand at 199.001 kb on + strand at 199.019 kb on - strand at 199.040 kb on + strand at 199.041 kb on - strand at 199.080 kb on + strand at 199.081 kb on - strand at 199.084 kb on - strand at 199.087 kb on + strand at 199.087 kb on + strand at 199.087 kb on + strand at 199.088 kb on - strand at 199.091 kb on + strand at 199.091 kb on + strand at 199.092 kb on - strand at 199.092 kb on - strand at 199.092 kb on - strand at 199.092 kb on - strand at 199.092 kb on - strand at 199.120 kb on + strand at 199.120 kb on + strand at 199.120 kb on + strand at 199.120 kb on + strand at 199.121 kb on - strand at 199.121 kb on - strand at 199.121 kb on - strand at 199.121 kb on - strand at 199.121 kb on - strand at 199.198 kb on - strand, within GFF5820 at 199.271 kb on - strand, within GFF5820 at 199.271 kb on - strand, within GFF5820 at 199.271 kb on - strand, within GFF5820 at 199.302 kb on - strand, within GFF5820 at 199.302 kb on - strand, within GFF5820 at 199.382 kb on + strand, within GFF5820 at 199.409 kb on + strand, within GFF5820 at 199.410 kb on - strand, within GFF5820 at 199.437 kb on + strand, within GFF5820 at 199.444 kb on + strand, within GFF5820 at 199.444 kb on + strand, within GFF5820 at 199.444 kb on + strand, within GFF5820 at 199.445 kb on - strand, within GFF5820 at 199.445 kb on - strand, within GFF5820 at 199.583 kb on + strand, within GFF5820 at 199.583 kb on + strand, within GFF5820 at 199.583 kb on + strand, within GFF5820 at 199.584 kb on - strand, within GFF5820 at 199.584 kb on - strand, within GFF5820 at 199.584 kb on - strand, within GFF5820 at 199.705 kb on + strand, within GFF5820 at 199.710 kb on + strand, within GFF5820 at 199.710 kb on + strand, within GFF5820 at 199.710 kb on + strand, within GFF5820 at 199.710 kb on + strand, within GFF5820 at 199.710 kb on + strand, within GFF5820 at 199.711 kb on - strand, within GFF5820 at 199.724 kb on + strand, within GFF5820 at 199.725 kb on - strand, within GFF5820 at 199.725 kb on - strand, within GFF5820 at 199.758 kb on - strand, within GFF5820 at 199.791 kb on + strand at 199.791 kb on + strand at 199.795 kb on + strand at 199.814 kb on - strand at 199.814 kb on - strand at 199.814 kb on - strand at 199.835 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 198,003 + GFF5818 0.41 -0.4 198,003 + GFF5818 0.41 +2.3 198,004 - GFF5818 0.41 -1.2 198,018 + GFF5818 0.43 -1.5 198,019 - GFF5818 0.44 -1.1 198,019 - GFF5818 0.44 +1.2 198,019 - GFF5818 0.44 -0.2 198,339 + +0.9 198,468 + -0.6 198,469 - -0.6 198,501 + +0.2 198,596 + +1.6 198,597 - -0.1 198,597 - +0.2 198,635 - +0.2 198,683 - GFF5819 0.25 +0.1 198,862 + +0.7 198,863 - -0.6 198,863 - -0.2 199,001 + -1.1 199,001 + -2.8 199,019 - -0.7 199,040 + -0.2 199,041 - +0.5 199,080 + +0.1 199,081 - -0.5 199,084 - +1.3 199,087 + -1.4 199,087 + +0.6 199,087 + -1.7 199,088 - -0.0 199,091 + +0.8 199,091 + -0.5 199,092 - -0.0 199,092 - -0.9 199,092 - +0.2 199,092 - -0.1 199,092 - +0.6 199,120 + -0.4 199,120 + -0.5 199,120 + +0.2 199,120 + -0.1 199,121 - -0.1 199,121 - +0.4 199,121 - -1.2 199,121 - +0.3 199,121 - +0.4 199,198 - GFF5820 0.11 -0.5 199,271 - GFF5820 0.21 -0.0 199,271 - GFF5820 0.21 -0.7 199,271 - GFF5820 0.21 +0.8 199,302 - GFF5820 0.25 +1.6 199,302 - GFF5820 0.25 -0.8 199,382 + GFF5820 0.36 -0.7 199,409 + GFF5820 0.40 +0.7 199,410 - GFF5820 0.40 +0.3 199,437 + GFF5820 0.44 +0.3 199,444 + GFF5820 0.45 +0.2 199,444 + GFF5820 0.45 -0.3 199,444 + GFF5820 0.45 -0.0 199,445 - GFF5820 0.45 -0.6 199,445 - GFF5820 0.45 -0.9 199,583 + GFF5820 0.64 -0.4 199,583 + GFF5820 0.64 -1.1 199,583 + GFF5820 0.64 +0.1 199,584 - GFF5820 0.64 +0.1 199,584 - GFF5820 0.64 -0.4 199,584 - GFF5820 0.64 -0.7 199,705 + GFF5820 0.81 -0.3 199,710 + GFF5820 0.81 +0.2 199,710 + GFF5820 0.81 -0.2 199,710 + GFF5820 0.81 +0.9 199,710 + GFF5820 0.81 -0.2 199,710 + GFF5820 0.81 -0.5 199,711 - GFF5820 0.82 -0.2 199,724 + GFF5820 0.83 -2.0 199,725 - GFF5820 0.84 +0.3 199,725 - GFF5820 0.84 +1.6 199,758 - GFF5820 0.88 -0.6 199,791 + -0.3 199,791 + +0.8 199,795 + -1.1 199,814 - +0.6 199,814 - +0.7 199,814 - +1.0 199,835 + -0.4
Or see this region's nucleotide sequence