Strain Fitness in Variovorax sp. SCN45 around GFF578

Experiment: Community=Locust bean gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF577 and GFF578 are separated by 89 nucleotidesGFF578 and GFF579 are separated by 25 nucleotides GFF577 - TolA protein, at 621,376 to 622,299 GFF577 GFF578 - Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129), at 622,389 to 624,119 GFF578 GFF579 - DNA polymerase III alpha subunit (EC 2.7.7.7), at 624,145 to 627,663 GFF579 Position (kb) 622 623 624 625Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 621.602 kb on + strand, within GFF577at 622.036 kb on + strand, within GFF577at 622.036 kb on + strand, within GFF577at 622.037 kb on - strand, within GFF577at 622.328 kb on + strandat 622.328 kb on + strandat 622.329 kb on - strandat 622.329 kb on - strandat 622.329 kb on - strandat 622.377 kb on + strandat 622.518 kb on + strandat 622.518 kb on + strandat 622.518 kb on + strandat 622.518 kb on + strandat 622.518 kb on + strandat 622.518 kb on + strandat 622.518 kb on + strandat 622.518 kb on + strandat 622.518 kb on + strandat 622.519 kb on - strandat 622.519 kb on - strandat 622.519 kb on - strandat 622.519 kb on - strandat 622.519 kb on - strandat 622.519 kb on - strandat 622.519 kb on - strandat 622.519 kb on - strandat 622.519 kb on - strandat 622.519 kb on - strandat 622.519 kb on - strandat 622.519 kb on - strandat 622.519 kb on - strandat 622.519 kb on - strandat 622.522 kb on + strandat 622.522 kb on + strandat 622.522 kb on + strandat 622.522 kb on + strandat 622.522 kb on + strandat 622.522 kb on + strandat 622.522 kb on + strandat 622.522 kb on + strandat 622.522 kb on + strandat 622.522 kb on + strandat 622.523 kb on - strandat 622.523 kb on - strandat 622.523 kb on - strandat 622.523 kb on - strandat 622.523 kb on - strandat 622.523 kb on - strandat 622.523 kb on - strandat 622.523 kb on - strandat 622.523 kb on - strandat 622.523 kb on - strandat 622.523 kb on - strandat 622.523 kb on - strandat 622.523 kb on - strandat 622.523 kb on - strandat 622.523 kb on - strandat 622.826 kb on + strand, within GFF578at 622.827 kb on - strand, within GFF578at 622.827 kb on - strand, within GFF578at 622.827 kb on - strand, within GFF578at 622.827 kb on - strand, within GFF578at 622.827 kb on - strand, within GFF578at 622.860 kb on + strand, within GFF578at 622.860 kb on + strand, within GFF578at 622.860 kb on + strand, within GFF578at 622.860 kb on + strand, within GFF578at 622.860 kb on + strand, within GFF578at 622.860 kb on + strand, within GFF578at 622.860 kb on + strand, within GFF578at 622.860 kb on + strand, within GFF578at 622.860 kb on + strand, within GFF578at 622.861 kb on - strand, within GFF578at 622.861 kb on - strand, within GFF578at 622.861 kb on - strand, within GFF578at 622.861 kb on - strand, within GFF578at 622.861 kb on - strand, within GFF578at 622.861 kb on - strand, within GFF578at 622.861 kb on - strand, within GFF578at 623.118 kb on + strand, within GFF578at 623.119 kb on - strand, within GFF578at 623.217 kb on + strand, within GFF578at 623.217 kb on + strand, within GFF578at 623.217 kb on + strand, within GFF578at 623.217 kb on + strand, within GFF578at 623.218 kb on - strand, within GFF578at 623.218 kb on - strand, within GFF578at 623.218 kb on - strand, within GFF578at 623.226 kb on + strand, within GFF578at 623.226 kb on + strand, within GFF578at 623.226 kb on + strand, within GFF578at 623.227 kb on - strand, within GFF578at 623.227 kb on - strand, within GFF578at 623.227 kb on - strand, within GFF578at 623.227 kb on - strand, within GFF578at 623.227 kb on - strand, within GFF578at 623.227 kb on - strand, within GFF578at 623.227 kb on - strand, within GFF578at 623.227 kb on - strand, within GFF578at 623.227 kb on - strand, within GFF578at 623.227 kb on - strand, within GFF578at 623.227 kb on - strand, within GFF578at 623.227 kb on - strand, within GFF578at 623.227 kb on - strand, within GFF578at 623.640 kb on + strand, within GFF578at 623.640 kb on + strand, within GFF578at 623.640 kb on + strand, within GFF578at 623.640 kb on + strand, within GFF578at 623.641 kb on - strand, within GFF578at 623.641 kb on - strand, within GFF578at 623.685 kb on + strand, within GFF578at 623.685 kb on + strand, within GFF578at 623.685 kb on + strand, within GFF578at 623.686 kb on - strand, within GFF578at 623.686 kb on - strand, within GFF578at 623.686 kb on - strand, within GFF578at 623.686 kb on - strand, within GFF578at 623.859 kb on + strand, within GFF578at 623.859 kb on + strand, within GFF578at 623.911 kb on - strand, within GFF578at 623.925 kb on + strand, within GFF578at 623.925 kb on + strand, within GFF578at 623.925 kb on + strand, within GFF578at 623.925 kb on + strand, within GFF578at 623.925 kb on + strand, within GFF578at 623.926 kb on - strand, within GFF578at 623.926 kb on - strand, within GFF578at 623.937 kb on + strand, within GFF578at 623.937 kb on + strand, within GFF578at 623.937 kb on + strand, within GFF578at 623.937 kb on + strand, within GFF578at 623.938 kb on - strand, within GFF578at 623.938 kb on - strand, within GFF578at 623.938 kb on - strand, within GFF578at 624.012 kb on + strandat 624.012 kb on + strandat 624.012 kb on + strandat 624.013 kb on - strandat 624.013 kb on - strandat 624.013 kb on - strandat 624.013 kb on - strandat 624.013 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1
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621,602 + GFF577 0.24 +1.8
622,036 + GFF577 0.71 -0.1
622,036 + GFF577 0.71 -0.6
622,037 - GFF577 0.72 -0.6
622,328 + +0.2
622,328 + -0.5
622,329 - +0.3
622,329 - -0.5
622,329 - +0.9
622,377 + -0.0
622,518 + -0.6
622,518 + -0.4
622,518 + +0.1
622,518 + -0.2
622,518 + -0.5
622,518 + +0.1
622,518 + +0.4
622,518 + -0.1
622,518 + +0.2
622,519 - -0.4
622,519 - -2.2
622,519 - -0.4
622,519 - +0.4
622,519 - -0.3
622,519 - -0.2
622,519 - +0.8
622,519 - +0.2
622,519 - +0.2
622,519 - +0.3
622,519 - -1.0
622,519 - +1.2
622,519 - -0.8
622,519 - +0.2
622,522 + -0.3
622,522 + -0.8
622,522 + -1.6
622,522 + -0.9
622,522 + +0.8
622,522 + +0.1
622,522 + -0.5
622,522 + -1.1
622,522 + +1.2
622,522 + -0.4
622,523 - -0.1
622,523 - -0.2
622,523 - +0.1
622,523 - -0.5
622,523 - +1.2
622,523 - +0.5
622,523 - -0.5
622,523 - +0.4
622,523 - -0.2
622,523 - +0.3
622,523 - -0.7
622,523 - -0.0
622,523 - -0.6
622,523 - +0.4
622,523 - -0.9
622,826 + GFF578 0.25 -0.1
622,827 - GFF578 0.25 -0.3
622,827 - GFF578 0.25 +0.2
622,827 - GFF578 0.25 -0.1
622,827 - GFF578 0.25 -0.4
622,827 - GFF578 0.25 +1.1
622,860 + GFF578 0.27 -0.4
622,860 + GFF578 0.27 -0.7
622,860 + GFF578 0.27 -0.2
622,860 + GFF578 0.27 -1.7
622,860 + GFF578 0.27 -1.1
622,860 + GFF578 0.27 +0.5
622,860 + GFF578 0.27 -1.9
622,860 + GFF578 0.27 -1.6
622,860 + GFF578 0.27 +0.1
622,861 - GFF578 0.27 -1.7
622,861 - GFF578 0.27 -0.2
622,861 - GFF578 0.27 +0.1
622,861 - GFF578 0.27 -0.2
622,861 - GFF578 0.27 -0.7
622,861 - GFF578 0.27 -0.5
622,861 - GFF578 0.27 +0.8
623,118 + GFF578 0.42 -0.9
623,119 - GFF578 0.42 -0.6
623,217 + GFF578 0.48 -2.0
623,217 + GFF578 0.48 -0.7
623,217 + GFF578 0.48 -1.4
623,217 + GFF578 0.48 -0.2
623,218 - GFF578 0.48 -0.8
623,218 - GFF578 0.48 -0.8
623,218 - GFF578 0.48 +0.6
623,226 + GFF578 0.48 +0.2
623,226 + GFF578 0.48 -0.0
623,226 + GFF578 0.48 -0.8
623,227 - GFF578 0.48 -0.3
623,227 - GFF578 0.48 -0.2
623,227 - GFF578 0.48 +0.4
623,227 - GFF578 0.48 +0.2
623,227 - GFF578 0.48 +0.6
623,227 - GFF578 0.48 -1.1
623,227 - GFF578 0.48 -0.4
623,227 - GFF578 0.48 +0.2
623,227 - GFF578 0.48 -1.4
623,227 - GFF578 0.48 +0.3
623,227 - GFF578 0.48 +0.3
623,227 - GFF578 0.48 -0.0
623,227 - GFF578 0.48 +0.9
623,640 + GFF578 0.72 -1.0
623,640 + GFF578 0.72 -0.8
623,640 + GFF578 0.72 -0.2
623,640 + GFF578 0.72 -0.8
623,641 - GFF578 0.72 +1.0
623,641 - GFF578 0.72 +0.5
623,685 + GFF578 0.75 +0.3
623,685 + GFF578 0.75 -0.2
623,685 + GFF578 0.75 -1.2
623,686 - GFF578 0.75 -1.6
623,686 - GFF578 0.75 +0.1
623,686 - GFF578 0.75 -0.8
623,686 - GFF578 0.75 -0.7
623,859 + GFF578 0.85 -0.3
623,859 + GFF578 0.85 -0.2
623,911 - GFF578 0.88 +0.1
623,925 + GFF578 0.89 -0.4
623,925 + GFF578 0.89 +1.2
623,925 + GFF578 0.89 +0.2
623,925 + GFF578 0.89 -0.1
623,925 + GFF578 0.89 +0.8
623,926 - GFF578 0.89 +0.0
623,926 - GFF578 0.89 +0.2
623,937 + GFF578 0.89 +0.6
623,937 + GFF578 0.89 -0.6
623,937 + GFF578 0.89 +0.5
623,937 + GFF578 0.89 -1.4
623,938 - GFF578 0.89 +0.2
623,938 - GFF578 0.89 +0.3
623,938 - GFF578 0.89 +0.5
624,012 + +0.5
624,012 + +0.2
624,012 + +0.7
624,013 - -3.0
624,013 - -0.5
624,013 - -0.4
624,013 - -0.2
624,013 - -0.4

Or see this region's nucleotide sequence