Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5760 and GFF5761 are separated by 66 nucleotides GFF5761 and GFF5762 are separated by 36 nucleotides GFF5762 and GFF5763 are separated by 50 nucleotides
GFF5760 - Flagellar transcriptional activator FlhC, at 132,018 to 132,605
GFF5760
GFF5761 - Flagellar motor rotation protein MotA, at 132,672 to 133,532
GFF5761
GFF5762 - Flagellar motor rotation protein MotB, at 133,569 to 134,534
GFF5762
GFF5763 - Signal transduction histidine kinase CheA, at 134,585 to 136,681
GFF5763
Position (kb) 133
134
135 Strain fitness (log2 ratio) -2
-1
0
1
2 at 132.603 kb on + strand at 132.603 kb on + strand at 132.603 kb on + strand at 132.603 kb on + strand at 132.604 kb on - strand at 132.604 kb on - strand at 132.607 kb on + strand at 132.607 kb on + strand at 132.608 kb on - strand at 132.608 kb on - strand at 132.608 kb on - strand at 132.688 kb on + strand at 132.690 kb on + strand at 132.690 kb on + strand at 132.690 kb on + strand at 132.690 kb on + strand at 132.690 kb on + strand at 132.691 kb on - strand at 132.691 kb on - strand at 132.691 kb on - strand at 132.691 kb on - strand at 132.723 kb on + strand at 132.723 kb on + strand at 132.724 kb on - strand at 132.894 kb on + strand, within GFF5761 at 132.894 kb on + strand, within GFF5761 at 132.894 kb on + strand, within GFF5761 at 132.894 kb on + strand, within GFF5761 at 132.894 kb on + strand, within GFF5761 at 132.894 kb on + strand, within GFF5761 at 132.894 kb on + strand, within GFF5761 at 132.894 kb on + strand, within GFF5761 at 132.894 kb on + strand, within GFF5761 at 132.894 kb on + strand, within GFF5761 at 132.894 kb on + strand, within GFF5761 at 132.894 kb on + strand, within GFF5761 at 132.895 kb on - strand, within GFF5761 at 132.895 kb on - strand, within GFF5761 at 132.918 kb on + strand, within GFF5761 at 132.919 kb on - strand, within GFF5761 at 132.919 kb on - strand, within GFF5761 at 132.919 kb on - strand, within GFF5761 at 132.919 kb on - strand, within GFF5761 at 133.056 kb on + strand, within GFF5761 at 133.056 kb on + strand, within GFF5761 at 133.320 kb on + strand, within GFF5761 at 133.320 kb on + strand, within GFF5761 at 133.321 kb on - strand, within GFF5761 at 133.383 kb on + strand, within GFF5761 at 133.384 kb on - strand, within GFF5761 at 133.426 kb on - strand, within GFF5761 at 133.656 kb on + strand at 133.657 kb on - strand at 133.657 kb on - strand at 134.158 kb on - strand, within GFF5762 at 134.158 kb on - strand, within GFF5762 at 134.532 kb on + strand at 134.892 kb on - strand, within GFF5763 at 134.892 kb on - strand, within GFF5763
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 132,603 + -0.3 132,603 + -1.1 132,603 + -0.2 132,603 + -2.2 132,604 - -0.4 132,604 - +0.5 132,607 + +0.5 132,607 + +0.4 132,608 - -0.0 132,608 - +0.3 132,608 - +0.6 132,688 + +0.4 132,690 + +0.8 132,690 + -0.4 132,690 + -1.4 132,690 + -0.7 132,690 + -0.4 132,691 - -0.5 132,691 - -0.4 132,691 - -0.2 132,691 - -0.4 132,723 + +1.0 132,723 + +1.8 132,724 - -0.3 132,894 + GFF5761 0.26 +2.2 132,894 + GFF5761 0.26 -1.5 132,894 + GFF5761 0.26 -0.4 132,894 + GFF5761 0.26 -0.0 132,894 + GFF5761 0.26 -0.4 132,894 + GFF5761 0.26 -0.5 132,894 + GFF5761 0.26 +0.1 132,894 + GFF5761 0.26 -0.9 132,894 + GFF5761 0.26 -0.2 132,894 + GFF5761 0.26 +0.3 132,894 + GFF5761 0.26 +0.3 132,894 + GFF5761 0.26 -0.7 132,895 - GFF5761 0.26 -1.4 132,895 - GFF5761 0.26 +0.6 132,918 + GFF5761 0.29 -0.0 132,919 - GFF5761 0.29 +1.2 132,919 - GFF5761 0.29 -0.3 132,919 - GFF5761 0.29 -1.2 132,919 - GFF5761 0.29 +0.4 133,056 + GFF5761 0.45 +0.0 133,056 + GFF5761 0.45 +0.1 133,320 + GFF5761 0.75 -0.6 133,320 + GFF5761 0.75 -0.4 133,321 - GFF5761 0.75 -0.7 133,383 + GFF5761 0.83 +1.6 133,384 - GFF5761 0.83 -2.0 133,426 - GFF5761 0.88 -0.5 133,656 + -0.0 133,657 - -0.8 133,657 - +0.1 134,158 - GFF5762 0.61 -0.8 134,158 - GFF5762 0.61 -1.7 134,532 + -0.1 134,892 - GFF5763 0.15 -0.0 134,892 - GFF5763 0.15 -0.6
Or see this region's nucleotide sequence