Strain Fitness in Variovorax sp. SCN45 around GFF5758

Experiment: Community=Locust bean gum; Passage=1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=1
130,115	+		GFF5757	0.31	+0.5
130,115	+		GFF5757	0.31	+2.2
130,115	+		GFF5757	0.31	-1.3
130,116	-		GFF5757	0.31	+0.3
130,116	-		GFF5757	0.31	-0.4
130,116	-		GFF5757	0.31	+0.5
130,116	-		GFF5757	0.31	+0.4
130,429	+		GFF5757	0.55	-0.5
130,429	+		GFF5757	0.55	+0.1
130,429	+		GFF5757	0.55	+0.2
130,430	-		GFF5757	0.55	-0.2
130,496	+		GFF5757	0.60	-0.2
130,497	-		GFF5757	0.60	+0.1
130,497	-		GFF5757	0.60	+1.6
130,497	-		GFF5757	0.60	+0.7
130,497	-		GFF5757	0.60	-0.5
131,006	+				-0.7
131,006	+				-0.8
131,006	+				-1.2
131,006	+				-1.0
131,006	+				+1.6
131,006	+				-0.1
131,006	+				-0.6
131,006	+				+0.3
131,006	+				-0.2
131,006	+				-0.6
131,006	+				-0.4
131,006	+				-0.4
131,006	+				-0.9
131,006	+				-0.3
131,007	-				-0.5
131,007	-				+1.3
131,007	-				+0.4
131,007	-				+0.2
131,007	-				-0.2
131,007	-				+0.8
131,056	+		GFF5758	0.15	-0.6
131,056	+		GFF5758	0.15	-1.0
131,057	-		GFF5758	0.15	-0.0
131,057	-		GFF5758	0.15	+0.1
131,057	-		GFF5758	0.15	-0.9
131,098	+		GFF5758	0.29	-0.8
131,098	+		GFF5758	0.29	-1.5
131,098	+		GFF5758	0.29	-1.4
131,099	-		GFF5758	0.29	+0.8
131,149	+		GFF5758	0.46	-1.2
131,149	+		GFF5758	0.46	-0.8
131,149	+		GFF5758	0.46	-1.6
131,149	+		GFF5758	0.46	-0.5
131,149	+		GFF5758	0.46	-1.4
131,149	+		GFF5758	0.46	-0.5
131,149	+		GFF5758	0.46	-0.7
131,149	+		GFF5758	0.46	+0.8
131,149	+		GFF5758	0.46	-1.5
131,150	-		GFF5758	0.46	-1.1
131,150	-		GFF5758	0.46	-0.3
131,150	-		GFF5758	0.46	-0.4
131,150	-		GFF5758	0.46	-1.2
131,150	-		GFF5758	0.46	-0.3
131,150	-		GFF5758	0.46	+0.1
131,150	-		GFF5758	0.46	+1.6
131,150	-		GFF5758	0.46	+0.6
131,150	-		GFF5758	0.46	-0.3
131,150	-		GFF5758	0.46	-0.7
131,150	-		GFF5758	0.46	+0.1
131,150	-		GFF5758	0.46	+1.6
131,150	-		GFF5758	0.46	+0.5
131,150	-		GFF5758	0.46	-1.2
131,150	-		GFF5758	0.46	+0.3
131,257	+		GFF5758	0.82	-0.1
131,257	+		GFF5758	0.82	-1.7
131,257	+		GFF5758	0.82	-0.8
131,257	+		GFF5758	0.82	-1.0
131,257	+		GFF5758	0.82	-0.4
131,257	+		GFF5758	0.82	-1.2
131,257	+		GFF5758	0.82	-1.2
131,258	-		GFF5758	0.82	+0.1
131,258	-		GFF5758	0.82	-1.4
131,258	-		GFF5758	0.82	-0.5
131,258	-		GFF5758	0.82	-0.7
131,258	-		GFF5758	0.82	-1.4
131,258	-		GFF5758	0.82	+0.2
131,308	+				+0.8
131,308	+				+0.6
131,308	+				+0.1
131,308	+				-1.0
131,308	+				-1.4
131,308	+				+0.3
131,309	-				+0.5
131,313	+				+0.2
131,314	-				+0.1
131,314	-				-0.7
131,323	+				-1.2
131,324	-				-1.4
131,331	+				+1.6
131,333	+				-1.2
131,334	-				-0.8
131,335	+				-1.0
131,335	+				-0.6
131,335	+				-0.1
131,336	-				-1.0
131,336	-				-0.5
131,336	-				-0.6
131,370	-				+1.3
131,370	-				-0.6
131,412	-				+0.5
131,493	+				-1.4
131,493	+				-0.7
131,493	+				-1.5
131,494	-				-0.7
131,494	-				-1.0
131,494	-				+0.2
131,494	-				-1.1
131,494	-				-0.4
131,494	-				-0.9
131,494	-				-0.2
131,494	-				+0.2
131,553	-				-0.6
131,553	-				+1.6
131,559	+				-0.7
131,560	-				-0.7
131,588	-				-0.9
131,593	-				+1.4
131,703	+		GFF5759	0.21	-0.4
131,703	+		GFF5759	0.21	-1.6
131,713	+		GFF5759	0.24	+1.6
131,713	+		GFF5759	0.24	+0.6
131,713	+		GFF5759	0.24	-1.0
131,713	+		GFF5759	0.24	-0.1
131,714	-		GFF5759	0.24	+0.8
131,714	-		GFF5759	0.24	-0.0
131,714	-		GFF5759	0.24	+0.4
131,714	-		GFF5759	0.24	-0.2
131,714	-		GFF5759	0.24	-0.7
131,714	-		GFF5759	0.24	-1.0
131,715	+		GFF5759	0.24	-0.1
131,715	+		GFF5759	0.24	-0.4
131,715	+		GFF5759	0.24	-0.3
131,715	+		GFF5759	0.24	-1.3
131,715	+		GFF5759	0.24	+0.2
131,715	+		GFF5759	0.24	-1.0
131,715	+		GFF5759	0.24	+0.5
131,715	+		GFF5759	0.24	+0.4
131,716	-		GFF5759	0.24	-1.1
131,716	-		GFF5759	0.24	+0.1
131,716	-		GFF5759	0.24	-0.3
131,716	-		GFF5759	0.24	-0.7
131,716	-		GFF5759	0.24	-0.0
131,716	-		GFF5759	0.24	+0.2
131,716	-		GFF5759	0.24	-0.2
131,716	-		GFF5759	0.24	-0.7
131,716	-		GFF5759	0.24	-0.1
131,716	-		GFF5759	0.24	-0.1
131,716	-		GFF5759	0.24	+0.3
131,716	-		GFF5759	0.24	-0.1
131,716	-		GFF5759	0.24	-0.0
132,147	+		GFF5760	0.22	+1.9
132,147	+		GFF5760	0.22	-0.1
132,147	+		GFF5760	0.22	-0.7
132,147	+		GFF5760	0.22	-1.4
132,147	+		GFF5760	0.22	-0.5
132,147	+		GFF5760	0.22	-0.4
132,148	-		GFF5760	0.22	+1.3
132,148	-		GFF5760	0.22	+1.1
132,148	-		GFF5760	0.22	-0.1
132,148	-		GFF5760	0.22	-0.2
132,197	+		GFF5760	0.30	-0.8
132,197	+		GFF5760	0.30	-0.7
132,207	+		GFF5760	0.32	-0.5
132,207	+		GFF5760	0.32	-0.3
132,207	+		GFF5760	0.32	-1.3
132,207	+		GFF5760	0.32	-0.0
132,207	+		GFF5760	0.32	-0.0
132,207	+		GFF5760	0.32	+0.2
132,207	+		GFF5760	0.32	+0.5
132,208	-		GFF5760	0.32	-1.3
132,208	-		GFF5760	0.32	+1.0
132,246	+		GFF5760	0.39	-1.3
132,246	+		GFF5760	0.39	-0.0
132,246	+		GFF5760	0.39	+0.1
132,246	+		GFF5760	0.39	-0.2
132,246	+		GFF5760	0.39	+0.5
132,247	-		GFF5760	0.39	+0.8
132,247	-		GFF5760	0.39	-0.3
132,247	-		GFF5760	0.39	-0.2
132,247	-		GFF5760	0.39	+0.2
132,247	-		GFF5760	0.39	-0.0
132,255	+		GFF5760	0.40	-0.7
132,255	+		GFF5760	0.40	-0.6
132,256	-		GFF5760	0.40	+0.7
132,256	-		GFF5760	0.40	-0.9
132,256	-		GFF5760	0.40	-0.6
132,256	-		GFF5760	0.40	+0.1