Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5722 and GFF5723 are separated by 10 nucleotides GFF5723 and GFF5724 are separated by 85 nucleotides GFF5724 and GFF5725 are separated by 57 nucleotides
GFF5722 - Flagellar P-ring protein FlgI, at 91,123 to 92,331
GFF5722
GFF5723 - Flagellar protein FlgJ [peptidoglycan hydrolase], at 92,342 to 93,358
GFF5723
GFF5724 - Positive regulator of CheA protein activity (CheW), at 93,444 to 93,959
GFF5724
GFF5725 - Methyl-accepting chemotaxis sensor/transducer protein, at 94,017 to 95,576
GFF5725
Position (kb) 92
93
94 Strain fitness (log2 ratio) -1
0
1 at 91.640 kb on - strand, within GFF5722 at 91.640 kb on - strand, within GFF5722 at 92.604 kb on - strand, within GFF5723 at 92.858 kb on + strand, within GFF5723 at 92.858 kb on + strand, within GFF5723 at 92.859 kb on - strand, within GFF5723 at 92.859 kb on - strand, within GFF5723 at 92.864 kb on + strand, within GFF5723 at 93.131 kb on + strand, within GFF5723 at 93.132 kb on - strand, within GFF5723 at 93.132 kb on - strand, within GFF5723 at 93.177 kb on - strand, within GFF5723 at 93.185 kb on + strand, within GFF5723 at 93.186 kb on - strand, within GFF5723 at 93.300 kb on - strand at 93.317 kb on + strand at 93.980 kb on - strand at 94.031 kb on + strand at 94.258 kb on - strand, within GFF5725
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 91,640 - GFF5722 0.43 -0.1 91,640 - GFF5722 0.43 +1.0 92,604 - GFF5723 0.26 +0.7 92,858 + GFF5723 0.51 +1.6 92,858 + GFF5723 0.51 -0.4 92,859 - GFF5723 0.51 -0.2 92,859 - GFF5723 0.51 +0.1 92,864 + GFF5723 0.51 -1.1 93,131 + GFF5723 0.78 +0.0 93,132 - GFF5723 0.78 -0.3 93,132 - GFF5723 0.78 -0.0 93,177 - GFF5723 0.82 +0.2 93,185 + GFF5723 0.83 +0.8 93,186 - GFF5723 0.83 +0.4 93,300 - -0.0 93,317 + +0.3 93,980 - +0.6 94,031 + -0.2 94,258 - GFF5725 0.15 -1.1
Or see this region's nucleotide sequence