Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5521 and GFF5522 overlap by 4 nucleotides GFF5522 and GFF5523 are separated by 55 nucleotides GFF5523 and GFF5524 are separated by 6 nucleotides GFF5524 and GFF5525 are separated by 142 nucleotides
GFF5521 - Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.128), at 151,686 to 152,228
GFF5521
GFF5522 - Uracil-DNA glycosylase, family 4 (EC 3.2.2.27), at 152,225 to 153,067
GFF5522
GFF5523 - Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23), at 153,123 to 153,947
GFF5523
GFF5524 - Predicted transcriptional regulator, at 153,954 to 154,688
GFF5524
GFF5525 - FIG00933173: hypothetical protein, at 154,831 to 155,685
GFF5525
Position (kb) 153
154 Strain fitness (log2 ratio) -2
-1
0
1
2 at 152.136 kb on + strand, within GFF5521 at 152.136 kb on + strand, within GFF5521 at 152.136 kb on + strand, within GFF5521 at 152.136 kb on + strand, within GFF5521 at 152.136 kb on + strand, within GFF5521 at 152.136 kb on + strand, within GFF5521 at 152.136 kb on + strand, within GFF5521 at 152.136 kb on + strand, within GFF5521 at 152.137 kb on - strand, within GFF5521 at 152.137 kb on - strand, within GFF5521 at 152.137 kb on - strand, within GFF5521 at 152.137 kb on - strand, within GFF5521 at 152.137 kb on - strand, within GFF5521 at 152.137 kb on - strand, within GFF5521 at 152.137 kb on - strand, within GFF5521 at 152.137 kb on - strand, within GFF5521 at 152.137 kb on - strand, within GFF5521 at 152.139 kb on + strand, within GFF5521 at 152.139 kb on + strand, within GFF5521 at 152.139 kb on + strand, within GFF5521 at 152.140 kb on - strand, within GFF5521 at 152.140 kb on - strand, within GFF5521 at 152.156 kb on + strand, within GFF5521 at 152.156 kb on + strand, within GFF5521 at 152.156 kb on + strand, within GFF5521 at 152.156 kb on + strand, within GFF5521 at 152.157 kb on - strand, within GFF5521 at 153.109 kb on + strand at 153.520 kb on - strand, within GFF5523 at 153.631 kb on - strand, within GFF5523 at 153.682 kb on + strand, within GFF5523 at 153.682 kb on + strand, within GFF5523 at 153.683 kb on - strand, within GFF5523 at 153.706 kb on - strand, within GFF5523 at 153.861 kb on + strand, within GFF5523 at 153.862 kb on - strand, within GFF5523 at 153.862 kb on - strand, within GFF5523 at 154.018 kb on + strand at 154.018 kb on + strand at 154.018 kb on + strand at 154.018 kb on + strand at 154.018 kb on + strand at 154.018 kb on + strand at 154.018 kb on + strand at 154.018 kb on + strand at 154.018 kb on + strand at 154.018 kb on + strand at 154.018 kb on + strand at 154.018 kb on + strand at 154.018 kb on + strand at 154.018 kb on + strand at 154.018 kb on + strand at 154.018 kb on + strand at 154.018 kb on + strand at 154.019 kb on - strand at 154.019 kb on - strand at 154.019 kb on - strand at 154.019 kb on - strand at 154.019 kb on - strand at 154.019 kb on - strand at 154.019 kb on - strand at 154.019 kb on - strand at 154.019 kb on - strand at 154.019 kb on - strand at 154.019 kb on - strand at 154.019 kb on - strand at 154.183 kb on + strand, within GFF5524 at 154.183 kb on + strand, within GFF5524 at 154.183 kb on + strand, within GFF5524 at 154.184 kb on - strand, within GFF5524 at 154.186 kb on + strand, within GFF5524 at 154.186 kb on + strand, within GFF5524 at 154.186 kb on + strand, within GFF5524 at 154.186 kb on + strand, within GFF5524 at 154.186 kb on + strand, within GFF5524 at 154.186 kb on + strand, within GFF5524 at 154.186 kb on + strand, within GFF5524 at 154.186 kb on + strand, within GFF5524 at 154.187 kb on - strand, within GFF5524 at 154.187 kb on - strand, within GFF5524 at 154.187 kb on - strand, within GFF5524 at 154.187 kb on - strand, within GFF5524 at 154.349 kb on + strand, within GFF5524 at 154.349 kb on + strand, within GFF5524 at 154.349 kb on + strand, within GFF5524 at 154.349 kb on + strand, within GFF5524 at 154.349 kb on + strand, within GFF5524 at 154.350 kb on - strand, within GFF5524 at 154.350 kb on - strand, within GFF5524 at 154.350 kb on - strand, within GFF5524 at 154.354 kb on + strand, within GFF5524 at 154.354 kb on + strand, within GFF5524 at 154.355 kb on - strand, within GFF5524 at 154.355 kb on - strand, within GFF5524 at 154.355 kb on - strand, within GFF5524 at 154.355 kb on - strand, within GFF5524 at 154.355 kb on - strand, within GFF5524 at 154.355 kb on - strand, within GFF5524 at 154.624 kb on + strand at 154.624 kb on + strand at 154.624 kb on + strand at 154.624 kb on + strand at 154.624 kb on + strand at 154.624 kb on + strand at 154.624 kb on + strand at 154.624 kb on + strand at 154.624 kb on + strand at 154.624 kb on + strand at 154.625 kb on - strand at 154.625 kb on - strand at 154.625 kb on - strand at 154.625 kb on - strand at 154.625 kb on - strand at 154.625 kb on - strand at 154.625 kb on - strand at 154.625 kb on - strand at 154.665 kb on + strand at 154.665 kb on + strand at 154.665 kb on + strand at 154.665 kb on + strand at 154.665 kb on + strand at 154.665 kb on + strand at 154.665 kb on + strand at 154.665 kb on + strand at 154.665 kb on + strand at 154.665 kb on + strand at 154.665 kb on + strand at 154.665 kb on + strand at 154.665 kb on + strand at 154.665 kb on + strand at 154.665 kb on + strand at 154.665 kb on + strand at 154.665 kb on + strand at 154.665 kb on + strand at 154.666 kb on - strand at 154.666 kb on - strand at 154.666 kb on - strand at 154.666 kb on - strand at 154.666 kb on - strand at 154.666 kb on - strand at 154.666 kb on - strand at 154.666 kb on - strand at 154.666 kb on - strand at 154.699 kb on + strand at 154.699 kb on + strand at 154.699 kb on + strand at 154.699 kb on - strand at 154.700 kb on - strand at 154.700 kb on - strand at 154.700 kb on - strand at 154.747 kb on + strand at 154.748 kb on - strand at 154.748 kb on - strand at 154.750 kb on + strand at 154.792 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 152,136 + GFF5521 0.83 +0.4 152,136 + GFF5521 0.83 -1.6 152,136 + GFF5521 0.83 +0.6 152,136 + GFF5521 0.83 -0.3 152,136 + GFF5521 0.83 +0.1 152,136 + GFF5521 0.83 -1.3 152,136 + GFF5521 0.83 -0.6 152,136 + GFF5521 0.83 +1.0 152,137 - GFF5521 0.83 +0.5 152,137 - GFF5521 0.83 -0.5 152,137 - GFF5521 0.83 -0.1 152,137 - GFF5521 0.83 +0.3 152,137 - GFF5521 0.83 -0.4 152,137 - GFF5521 0.83 -1.0 152,137 - GFF5521 0.83 -0.1 152,137 - GFF5521 0.83 -0.6 152,137 - GFF5521 0.83 +0.1 152,139 + GFF5521 0.83 -0.1 152,139 + GFF5521 0.83 -0.6 152,139 + GFF5521 0.83 +0.4 152,140 - GFF5521 0.84 -0.7 152,140 - GFF5521 0.84 +0.1 152,156 + GFF5521 0.87 +0.0 152,156 + GFF5521 0.87 +0.4 152,156 + GFF5521 0.87 +0.3 152,156 + GFF5521 0.87 +0.2 152,157 - GFF5521 0.87 +0.9 153,109 + -0.8 153,520 - GFF5523 0.48 +1.4 153,631 - GFF5523 0.62 -0.1 153,682 + GFF5523 0.68 -0.1 153,682 + GFF5523 0.68 -0.7 153,683 - GFF5523 0.68 -1.1 153,706 - GFF5523 0.71 +0.4 153,861 + GFF5523 0.89 -0.7 153,862 - GFF5523 0.90 -0.5 153,862 - GFF5523 0.90 +1.1 154,018 + -0.3 154,018 + +1.1 154,018 + +0.1 154,018 + -1.2 154,018 + -0.3 154,018 + +1.4 154,018 + +0.1 154,018 + +0.4 154,018 + -1.9 154,018 + +0.0 154,018 + -0.0 154,018 + +0.2 154,018 + +0.7 154,018 + -0.1 154,018 + +0.1 154,018 + +1.9 154,018 + +0.5 154,019 - +0.3 154,019 - -0.3 154,019 - +1.3 154,019 - -1.3 154,019 - +0.3 154,019 - -1.2 154,019 - -0.9 154,019 - -0.0 154,019 - -1.2 154,019 - -1.1 154,019 - +0.1 154,019 - +0.2 154,183 + GFF5524 0.31 +1.0 154,183 + GFF5524 0.31 -0.4 154,183 + GFF5524 0.31 -0.4 154,184 - GFF5524 0.31 +0.7 154,186 + GFF5524 0.32 +0.1 154,186 + GFF5524 0.32 -0.3 154,186 + GFF5524 0.32 -0.8 154,186 + GFF5524 0.32 -0.2 154,186 + GFF5524 0.32 -1.1 154,186 + GFF5524 0.32 -0.7 154,186 + GFF5524 0.32 -1.0 154,186 + GFF5524 0.32 +0.2 154,187 - GFF5524 0.32 +0.1 154,187 - GFF5524 0.32 +1.1 154,187 - GFF5524 0.32 -0.3 154,187 - GFF5524 0.32 +1.6 154,349 + GFF5524 0.54 -0.3 154,349 + GFF5524 0.54 -0.3 154,349 + GFF5524 0.54 -0.2 154,349 + GFF5524 0.54 -0.2 154,349 + GFF5524 0.54 +0.9 154,350 - GFF5524 0.54 -0.6 154,350 - GFF5524 0.54 -0.4 154,350 - GFF5524 0.54 +0.6 154,354 + GFF5524 0.54 -0.5 154,354 + GFF5524 0.54 +1.4 154,355 - GFF5524 0.55 -0.4 154,355 - GFF5524 0.55 -0.9 154,355 - GFF5524 0.55 +0.3 154,355 - GFF5524 0.55 -0.9 154,355 - GFF5524 0.55 +0.3 154,355 - GFF5524 0.55 -0.7 154,624 + +0.3 154,624 + +0.9 154,624 + +0.1 154,624 + +1.3 154,624 + +0.4 154,624 + +1.9 154,624 + -1.1 154,624 + -1.3 154,624 + +0.2 154,624 + -0.0 154,625 - +0.3 154,625 - -0.3 154,625 - -0.2 154,625 - -1.8 154,625 - +0.5 154,625 - -0.8 154,625 - -0.1 154,625 - -2.2 154,665 + +0.2 154,665 + +0.1 154,665 + +0.1 154,665 + -0.6 154,665 + -0.8 154,665 + -0.8 154,665 + -0.7 154,665 + -0.3 154,665 + -0.1 154,665 + -0.2 154,665 + -0.5 154,665 + +0.3 154,665 + -0.7 154,665 + -0.4 154,665 + -0.1 154,665 + -0.4 154,665 + -0.1 154,665 + +0.2 154,666 - -0.1 154,666 - -0.5 154,666 - -2.2 154,666 - -0.8 154,666 - -0.2 154,666 - +0.3 154,666 - -0.4 154,666 - -0.7 154,666 - -0.5 154,699 + +0.1 154,699 + +0.1 154,699 + +1.5 154,699 - +0.9 154,700 - -0.4 154,700 - +0.3 154,700 - -1.1 154,747 + +0.9 154,748 - -0.4 154,748 - +0.0 154,750 + -0.8 154,792 + -0.7
Or see this region's nucleotide sequence