Strain Fitness in Variovorax sp. SCN45 around GFF5367

Experiment: Community=Locust bean gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5366 and GFF5367 overlap by 4 nucleotidesGFF5367 and GFF5368 overlap by 4 nucleotides GFF5366 - L-Proline/Glycine betaine transporter ProP, at 239,159 to 240,511 GFF5366 GFF5367 - GTP cyclohydrolase 1 type 2 homolog YbgI, at 240,508 to 241,281 GFF5367 GFF5368 - 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262), at 241,278 to 242,321 GFF5368 Position (kb) 240 241 242Strain fitness (log2 ratio) -2 -1 0 1 2at 239.516 kb on + strand, within GFF5366at 239.516 kb on + strand, within GFF5366at 239.516 kb on + strand, within GFF5366at 239.516 kb on + strand, within GFF5366at 239.516 kb on + strand, within GFF5366at 239.517 kb on - strand, within GFF5366at 239.517 kb on - strand, within GFF5366at 239.517 kb on - strand, within GFF5366at 239.517 kb on - strand, within GFF5366at 239.729 kb on + strand, within GFF5366at 239.807 kb on + strand, within GFF5366at 239.807 kb on + strand, within GFF5366at 239.807 kb on + strand, within GFF5366at 239.807 kb on + strand, within GFF5366at 239.807 kb on + strand, within GFF5366at 239.807 kb on + strand, within GFF5366at 239.807 kb on + strand, within GFF5366at 239.808 kb on - strand, within GFF5366at 239.808 kb on - strand, within GFF5366at 239.808 kb on - strand, within GFF5366at 239.924 kb on + strand, within GFF5366at 239.925 kb on - strand, within GFF5366at 239.925 kb on - strand, within GFF5366at 239.925 kb on - strand, within GFF5366at 239.978 kb on + strand, within GFF5366at 239.978 kb on + strand, within GFF5366at 239.979 kb on - strand, within GFF5366at 239.979 kb on - strand, within GFF5366at 239.979 kb on - strand, within GFF5366at 239.990 kb on + strand, within GFF5366at 239.990 kb on + strand, within GFF5366at 239.991 kb on - strand, within GFF5366at 239.991 kb on - strand, within GFF5366at 239.991 kb on - strand, within GFF5366at 239.991 kb on - strand, within GFF5366at 239.991 kb on - strand, within GFF5366at 240.155 kb on + strand, within GFF5366at 240.155 kb on + strand, within GFF5366at 240.164 kb on + strand, within GFF5366at 240.164 kb on + strand, within GFF5366at 240.164 kb on + strand, within GFF5366at 240.164 kb on + strand, within GFF5366at 240.165 kb on - strand, within GFF5366at 240.206 kb on + strand, within GFF5366at 240.206 kb on + strand, within GFF5366at 240.308 kb on + strand, within GFF5366at 240.308 kb on + strand, within GFF5366at 240.308 kb on + strand, within GFF5366at 240.308 kb on + strand, within GFF5366at 240.308 kb on + strand, within GFF5366at 240.308 kb on + strand, within GFF5366at 240.309 kb on - strand, within GFF5366at 240.309 kb on - strand, within GFF5366at 240.309 kb on - strand, within GFF5366at 240.309 kb on - strand, within GFF5366at 240.309 kb on - strand, within GFF5366at 240.320 kb on + strand, within GFF5366at 240.320 kb on + strand, within GFF5366at 240.320 kb on + strand, within GFF5366at 240.320 kb on + strand, within GFF5366at 240.320 kb on + strand, within GFF5366at 240.320 kb on + strand, within GFF5366at 240.321 kb on - strand, within GFF5366at 240.321 kb on - strand, within GFF5366at 240.321 kb on - strand, within GFF5366at 240.321 kb on - strand, within GFF5366at 240.321 kb on - strand, within GFF5366at 240.395 kb on + strandat 240.395 kb on + strandat 240.395 kb on + strandat 240.396 kb on - strandat 240.396 kb on - strandat 240.578 kb on - strandat 240.799 kb on + strand, within GFF5367at 241.069 kb on + strand, within GFF5367at 241.070 kb on - strand, within GFF5367at 241.070 kb on - strand, within GFF5367at 241.070 kb on - strand, within GFF5367at 241.070 kb on - strand, within GFF5367at 241.070 kb on - strand, within GFF5367at 241.141 kb on + strand, within GFF5367at 241.199 kb on - strand, within GFF5367

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1
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239,516 + GFF5366 0.26 +1.9
239,516 + GFF5366 0.26 -1.3
239,516 + GFF5366 0.26 -0.5
239,516 + GFF5366 0.26 -0.3
239,516 + GFF5366 0.26 -0.7
239,517 - GFF5366 0.26 -0.6
239,517 - GFF5366 0.26 -1.6
239,517 - GFF5366 0.26 -0.4
239,517 - GFF5366 0.26 -0.2
239,729 + GFF5366 0.42 -0.2
239,807 + GFF5366 0.48 +1.2
239,807 + GFF5366 0.48 +0.1
239,807 + GFF5366 0.48 -0.6
239,807 + GFF5366 0.48 -0.3
239,807 + GFF5366 0.48 -0.5
239,807 + GFF5366 0.48 -0.4
239,807 + GFF5366 0.48 -0.9
239,808 - GFF5366 0.48 -1.7
239,808 - GFF5366 0.48 -0.4
239,808 - GFF5366 0.48 -0.7
239,924 + GFF5366 0.57 -0.2
239,925 - GFF5366 0.57 -0.3
239,925 - GFF5366 0.57 -1.4
239,925 - GFF5366 0.57 +2.6
239,978 + GFF5366 0.61 +1.0
239,978 + GFF5366 0.61 -0.2
239,979 - GFF5366 0.61 -0.8
239,979 - GFF5366 0.61 -0.1
239,979 - GFF5366 0.61 -0.1
239,990 + GFF5366 0.61 -0.7
239,990 + GFF5366 0.61 -0.7
239,991 - GFF5366 0.61 +1.2
239,991 - GFF5366 0.61 -0.2
239,991 - GFF5366 0.61 +0.2
239,991 - GFF5366 0.61 -0.7
239,991 - GFF5366 0.61 -0.0
240,155 + GFF5366 0.74 +0.3
240,155 + GFF5366 0.74 -0.1
240,164 + GFF5366 0.74 -0.5
240,164 + GFF5366 0.74 -0.2
240,164 + GFF5366 0.74 -1.2
240,164 + GFF5366 0.74 +0.3
240,165 - GFF5366 0.74 +0.3
240,206 + GFF5366 0.77 -0.7
240,206 + GFF5366 0.77 +0.1
240,308 + GFF5366 0.85 -0.5
240,308 + GFF5366 0.85 -0.0
240,308 + GFF5366 0.85 +0.3
240,308 + GFF5366 0.85 -0.3
240,308 + GFF5366 0.85 +0.2
240,308 + GFF5366 0.85 +1.3
240,309 - GFF5366 0.85 -0.0
240,309 - GFF5366 0.85 +0.4
240,309 - GFF5366 0.85 +0.4
240,309 - GFF5366 0.85 -0.6
240,309 - GFF5366 0.85 +1.7
240,320 + GFF5366 0.86 +0.1
240,320 + GFF5366 0.86 -1.4
240,320 + GFF5366 0.86 -1.9
240,320 + GFF5366 0.86 -1.1
240,320 + GFF5366 0.86 +0.1
240,320 + GFF5366 0.86 +0.1
240,321 - GFF5366 0.86 +0.2
240,321 - GFF5366 0.86 -0.4
240,321 - GFF5366 0.86 -0.6
240,321 - GFF5366 0.86 -0.0
240,321 - GFF5366 0.86 -0.5
240,395 + -0.6
240,395 + -0.0
240,395 + -0.2
240,396 - -1.4
240,396 - -1.2
240,578 - +0.4
240,799 + GFF5367 0.38 -1.1
241,069 + GFF5367 0.72 -0.6
241,070 - GFF5367 0.73 -0.4
241,070 - GFF5367 0.73 -0.4
241,070 - GFF5367 0.73 -0.4
241,070 - GFF5367 0.73 -0.6
241,070 - GFF5367 0.73 -0.9
241,141 + GFF5367 0.82 -0.3
241,199 - GFF5367 0.89 -1.2

Or see this region's nucleotide sequence