Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5336 and GFF5337 are separated by 35 nucleotides GFF5337 and GFF5338 are separated by 165 nucleotides GFF5338 and GFF5339 are separated by 10 nucleotides GFF5339 and GFF5340 are separated by 33 nucleotides
GFF5336 - Phospholipid ABC transporter substrate-binding protein MlaD, at 217,080 to 217,571
GFF5336
GFF5337 - Outer-membrane-phospholipid-binding lipoprotein MlaA, at 217,607 to 218,314
GFF5337
GFF5338 - Phospholipid ABC transporter shuttle protein MlaC, at 218,480 to 219,136
GFF5338
GFF5339 - Phospholipid ABC transporter-binding protein MlaB, at 219,147 to 219,422
GFF5339
GFF5340 - Efflux ABC transporter, ATP-binding protein, at 219,456 to 220,403
GFF5340
Position (kb) 218
219
220 Strain fitness (log2 ratio) -2
-1
0
1
2 at 217.515 kb on + strand, within GFF5336 at 217.515 kb on + strand, within GFF5336 at 217.515 kb on + strand, within GFF5336 at 217.516 kb on - strand, within GFF5336 at 217.516 kb on - strand, within GFF5336 at 217.516 kb on - strand, within GFF5336 at 217.516 kb on - strand, within GFF5336 at 217.516 kb on - strand, within GFF5336 at 217.516 kb on - strand, within GFF5336 at 217.535 kb on + strand at 217.535 kb on + strand at 217.535 kb on + strand at 217.535 kb on + strand at 217.535 kb on + strand at 217.535 kb on + strand at 217.536 kb on - strand at 217.536 kb on - strand at 217.536 kb on - strand at 217.536 kb on - strand at 217.536 kb on - strand at 217.536 kb on - strand at 217.536 kb on - strand at 217.538 kb on + strand at 217.538 kb on + strand at 217.538 kb on + strand at 217.538 kb on + strand at 217.538 kb on + strand at 217.538 kb on + strand at 217.538 kb on + strand at 217.538 kb on + strand at 217.538 kb on + strand at 217.538 kb on + strand at 217.538 kb on + strand at 217.539 kb on - strand at 217.539 kb on - strand at 217.539 kb on - strand at 217.539 kb on - strand at 217.539 kb on - strand at 217.539 kb on - strand at 217.539 kb on - strand at 217.539 kb on - strand at 217.539 kb on - strand at 217.539 kb on - strand at 217.539 kb on - strand at 217.539 kb on - strand at 217.539 kb on - strand at 217.539 kb on - strand at 217.539 kb on - strand at 217.539 kb on - strand at 217.585 kb on + strand at 217.586 kb on - strand at 217.620 kb on + strand at 217.620 kb on + strand at 217.620 kb on + strand at 217.620 kb on + strand at 217.620 kb on + strand at 217.621 kb on - strand at 217.621 kb on - strand at 217.621 kb on - strand at 217.621 kb on - strand at 217.788 kb on + strand, within GFF5337 at 217.788 kb on + strand, within GFF5337 at 217.788 kb on + strand, within GFF5337 at 217.788 kb on + strand, within GFF5337 at 217.788 kb on + strand, within GFF5337 at 217.788 kb on + strand, within GFF5337 at 217.788 kb on + strand, within GFF5337 at 217.788 kb on + strand, within GFF5337 at 217.788 kb on + strand, within GFF5337 at 217.789 kb on - strand, within GFF5337 at 217.789 kb on - strand, within GFF5337 at 217.789 kb on - strand, within GFF5337 at 217.789 kb on - strand, within GFF5337 at 217.789 kb on - strand, within GFF5337 at 217.789 kb on - strand, within GFF5337 at 217.789 kb on - strand, within GFF5337 at 217.789 kb on - strand, within GFF5337 at 217.807 kb on + strand, within GFF5337 at 218.034 kb on - strand, within GFF5337 at 218.099 kb on + strand, within GFF5337 at 218.100 kb on - strand, within GFF5337 at 218.100 kb on - strand, within GFF5337 at 218.100 kb on - strand, within GFF5337 at 218.183 kb on + strand, within GFF5337 at 218.183 kb on + strand, within GFF5337 at 218.184 kb on - strand, within GFF5337 at 218.184 kb on - strand, within GFF5337 at 218.184 kb on - strand, within GFF5337 at 218.228 kb on + strand, within GFF5337 at 218.228 kb on + strand, within GFF5337 at 218.228 kb on + strand, within GFF5337 at 218.228 kb on + strand, within GFF5337 at 218.228 kb on + strand, within GFF5337 at 218.228 kb on + strand, within GFF5337 at 218.229 kb on - strand, within GFF5337 at 218.229 kb on - strand, within GFF5337 at 218.229 kb on - strand, within GFF5337 at 218.229 kb on - strand, within GFF5337 at 218.229 kb on - strand, within GFF5337 at 218.229 kb on - strand, within GFF5337 at 218.276 kb on + strand at 218.276 kb on + strand at 218.276 kb on + strand at 218.276 kb on + strand at 218.276 kb on + strand at 218.276 kb on + strand at 218.276 kb on + strand at 218.276 kb on + strand at 218.276 kb on + strand at 218.277 kb on - strand at 218.277 kb on - strand at 218.277 kb on - strand at 218.277 kb on - strand at 218.277 kb on - strand at 218.277 kb on - strand at 218.277 kb on - strand at 218.312 kb on + strand at 218.313 kb on - strand at 218.318 kb on + strand at 218.318 kb on + strand at 218.318 kb on + strand at 218.318 kb on + strand at 218.318 kb on + strand at 218.318 kb on + strand at 218.319 kb on - strand at 218.319 kb on - strand at 218.319 kb on - strand at 218.319 kb on - strand at 218.319 kb on - strand at 218.319 kb on - strand at 218.319 kb on - strand at 218.319 kb on - strand at 218.828 kb on + strand, within GFF5338 at 218.828 kb on + strand, within GFF5338 at 218.828 kb on + strand, within GFF5338 at 218.828 kb on + strand, within GFF5338 at 218.828 kb on + strand, within GFF5338 at 218.828 kb on + strand, within GFF5338 at 218.828 kb on + strand, within GFF5338 at 218.829 kb on - strand, within GFF5338 at 218.829 kb on - strand, within GFF5338 at 218.829 kb on - strand, within GFF5338 at 218.829 kb on - strand, within GFF5338 at 218.829 kb on - strand, within GFF5338 at 218.829 kb on - strand, within GFF5338 at 218.829 kb on - strand, within GFF5338 at 218.829 kb on - strand, within GFF5338 at 218.957 kb on + strand, within GFF5338 at 218.958 kb on - strand, within GFF5338 at 218.958 kb on - strand, within GFF5338 at 219.002 kb on + strand, within GFF5338 at 219.002 kb on + strand, within GFF5338 at 219.002 kb on + strand, within GFF5338 at 219.002 kb on + strand, within GFF5338 at 219.002 kb on + strand, within GFF5338 at 219.003 kb on - strand, within GFF5338 at 219.003 kb on - strand, within GFF5338 at 219.003 kb on - strand, within GFF5338 at 219.003 kb on - strand, within GFF5338 at 219.003 kb on - strand, within GFF5338 at 219.037 kb on + strand, within GFF5338 at 219.038 kb on - strand, within GFF5338 at 219.041 kb on + strand, within GFF5338 at 219.041 kb on + strand, within GFF5338 at 219.041 kb on + strand, within GFF5338 at 219.042 kb on - strand, within GFF5338 at 219.042 kb on - strand, within GFF5338 at 219.042 kb on - strand, within GFF5338 at 219.387 kb on + strand, within GFF5339 at 219.387 kb on + strand, within GFF5339 at 219.387 kb on + strand, within GFF5339 at 219.388 kb on - strand, within GFF5339 at 219.388 kb on - strand, within GFF5339 at 219.388 kb on - strand, within GFF5339 at 219.428 kb on + strand at 219.492 kb on + strand at 219.492 kb on + strand at 219.492 kb on + strand at 219.492 kb on + strand at 219.492 kb on + strand at 219.492 kb on + strand at 219.492 kb on + strand at 219.492 kb on + strand at 219.493 kb on - strand at 219.493 kb on - strand at 219.493 kb on - strand at 219.493 kb on - strand at 219.493 kb on - strand at 219.493 kb on - strand at 219.699 kb on + strand, within GFF5340 at 219.699 kb on + strand, within GFF5340 at 219.795 kb on + strand, within GFF5340 at 219.796 kb on - strand, within GFF5340 at 219.796 kb on - strand, within GFF5340 at 220.037 kb on + strand, within GFF5340 at 220.038 kb on - strand, within GFF5340 at 220.038 kb on - strand, within GFF5340 at 220.038 kb on - strand, within GFF5340 at 220.038 kb on - strand, within GFF5340 at 220.059 kb on + strand, within GFF5340 at 220.059 kb on + strand, within GFF5340 at 220.059 kb on + strand, within GFF5340 at 220.059 kb on + strand, within GFF5340 at 220.060 kb on - strand, within GFF5340 at 220.060 kb on - strand, within GFF5340
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 217,515 + GFF5336 0.88 +1.2 217,515 + GFF5336 0.88 -0.7 217,515 + GFF5336 0.88 -0.6 217,516 - GFF5336 0.89 -0.5 217,516 - GFF5336 0.89 -1.0 217,516 - GFF5336 0.89 -0.2 217,516 - GFF5336 0.89 -1.4 217,516 - GFF5336 0.89 -0.5 217,516 - GFF5336 0.89 -0.6 217,535 + -1.2 217,535 + +0.3 217,535 + -0.7 217,535 + -1.2 217,535 + -1.0 217,535 + +0.3 217,536 - +0.1 217,536 - -0.7 217,536 - -0.1 217,536 - +0.9 217,536 - +0.8 217,536 - -0.9 217,536 - -0.7 217,538 + -0.4 217,538 + -0.0 217,538 + -0.4 217,538 + +0.3 217,538 + -0.6 217,538 + +1.3 217,538 + -0.2 217,538 + +0.1 217,538 + +0.2 217,538 + -0.1 217,538 + -0.5 217,539 - -0.1 217,539 - +0.2 217,539 - -0.2 217,539 - -0.0 217,539 - -1.2 217,539 - -0.2 217,539 - -0.7 217,539 - +0.3 217,539 - +0.1 217,539 - -1.8 217,539 - -0.0 217,539 - +0.4 217,539 - +0.3 217,539 - +1.0 217,539 - -0.5 217,539 - +0.8 217,585 + -0.0 217,586 - +1.6 217,620 + -1.7 217,620 + -0.9 217,620 + +1.2 217,620 + -1.2 217,620 + -1.7 217,621 - -0.2 217,621 - -2.0 217,621 - -0.3 217,621 - -0.0 217,788 + GFF5337 0.26 -0.4 217,788 + GFF5337 0.26 -0.1 217,788 + GFF5337 0.26 -1.0 217,788 + GFF5337 0.26 -0.6 217,788 + GFF5337 0.26 -1.1 217,788 + GFF5337 0.26 +0.2 217,788 + GFF5337 0.26 -0.3 217,788 + GFF5337 0.26 -1.3 217,788 + GFF5337 0.26 -0.6 217,789 - GFF5337 0.26 -0.9 217,789 - GFF5337 0.26 +0.1 217,789 - GFF5337 0.26 -0.6 217,789 - GFF5337 0.26 +0.7 217,789 - GFF5337 0.26 -0.9 217,789 - GFF5337 0.26 +1.6 217,789 - GFF5337 0.26 +0.8 217,789 - GFF5337 0.26 -0.0 217,807 + GFF5337 0.28 +1.2 218,034 - GFF5337 0.60 -0.9 218,099 + GFF5337 0.69 -0.2 218,100 - GFF5337 0.70 -0.8 218,100 - GFF5337 0.70 -1.5 218,100 - GFF5337 0.70 +1.2 218,183 + GFF5337 0.81 -0.0 218,183 + GFF5337 0.81 -0.4 218,184 - GFF5337 0.81 +0.3 218,184 - GFF5337 0.81 -1.1 218,184 - GFF5337 0.81 -0.3 218,228 + GFF5337 0.88 -2.0 218,228 + GFF5337 0.88 -0.0 218,228 + GFF5337 0.88 +1.0 218,228 + GFF5337 0.88 +0.3 218,228 + GFF5337 0.88 -0.2 218,228 + GFF5337 0.88 +0.1 218,229 - GFF5337 0.88 -1.6 218,229 - GFF5337 0.88 -1.7 218,229 - GFF5337 0.88 -0.7 218,229 - GFF5337 0.88 -0.5 218,229 - GFF5337 0.88 -0.1 218,229 - GFF5337 0.88 -2.1 218,276 + +1.2 218,276 + +0.3 218,276 + +1.5 218,276 + -0.4 218,276 + -0.3 218,276 + -0.4 218,276 + -0.2 218,276 + +0.1 218,276 + +0.6 218,277 - +0.9 218,277 - -0.8 218,277 - -0.0 218,277 - -1.5 218,277 - -0.2 218,277 - -0.4 218,277 - +0.1 218,312 + -0.4 218,313 - +1.0 218,318 + -0.0 218,318 + -0.4 218,318 + -0.6 218,318 + +0.4 218,318 + -0.4 218,318 + -1.4 218,319 - -0.4 218,319 - +0.8 218,319 - -0.9 218,319 - -0.8 218,319 - -0.7 218,319 - -0.5 218,319 - +0.7 218,319 - +0.1 218,828 + GFF5338 0.53 +0.8 218,828 + GFF5338 0.53 -0.2 218,828 + GFF5338 0.53 +0.2 218,828 + GFF5338 0.53 +0.3 218,828 + GFF5338 0.53 -2.1 218,828 + GFF5338 0.53 -1.4 218,828 + GFF5338 0.53 -1.9 218,829 - GFF5338 0.53 -0.7 218,829 - GFF5338 0.53 -2.3 218,829 - GFF5338 0.53 -0.3 218,829 - GFF5338 0.53 -0.0 218,829 - GFF5338 0.53 -0.7 218,829 - GFF5338 0.53 +0.4 218,829 - GFF5338 0.53 -0.8 218,829 - GFF5338 0.53 +0.3 218,957 + GFF5338 0.73 -0.3 218,958 - GFF5338 0.73 -2.1 218,958 - GFF5338 0.73 +1.3 219,002 + GFF5338 0.79 -0.5 219,002 + GFF5338 0.79 -0.4 219,002 + GFF5338 0.79 -0.7 219,002 + GFF5338 0.79 -0.0 219,002 + GFF5338 0.79 -0.3 219,003 - GFF5338 0.80 -0.3 219,003 - GFF5338 0.80 -0.1 219,003 - GFF5338 0.80 +0.1 219,003 - GFF5338 0.80 -0.6 219,003 - GFF5338 0.80 -0.1 219,037 + GFF5338 0.85 -1.4 219,038 - GFF5338 0.85 -0.5 219,041 + GFF5338 0.85 +0.3 219,041 + GFF5338 0.85 -0.9 219,041 + GFF5338 0.85 -1.3 219,042 - GFF5338 0.86 -0.7 219,042 - GFF5338 0.86 -0.7 219,042 - GFF5338 0.86 -0.4 219,387 + GFF5339 0.87 +0.7 219,387 + GFF5339 0.87 -1.0 219,387 + GFF5339 0.87 -0.4 219,388 - GFF5339 0.87 +2.0 219,388 - GFF5339 0.87 -0.0 219,388 - GFF5339 0.87 +0.3 219,428 + -0.2 219,492 + -0.1 219,492 + +0.2 219,492 + -1.4 219,492 + +0.5 219,492 + -0.5 219,492 + -0.1 219,492 + -1.0 219,492 + +0.4 219,493 - -1.0 219,493 - -0.6 219,493 - -0.2 219,493 - +0.3 219,493 - -0.2 219,493 - -0.2 219,699 + GFF5340 0.26 -0.7 219,699 + GFF5340 0.26 -0.2 219,795 + GFF5340 0.36 +0.3 219,796 - GFF5340 0.36 -0.9 219,796 - GFF5340 0.36 -1.0 220,037 + GFF5340 0.61 -0.7 220,038 - GFF5340 0.61 +1.0 220,038 - GFF5340 0.61 -0.7 220,038 - GFF5340 0.61 +1.6 220,038 - GFF5340 0.61 -1.0 220,059 + GFF5340 0.64 +0.3 220,059 + GFF5340 0.64 -1.3 220,059 + GFF5340 0.64 -0.5 220,059 + GFF5340 0.64 -0.0 220,060 - GFF5340 0.64 -0.9 220,060 - GFF5340 0.64 -0.1
Or see this region's nucleotide sequence