Strain Fitness in Variovorax sp. SCN45 around GFF5310

Experiment: Community=Locust bean gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5308 and GFF5309 are separated by 85 nucleotidesGFF5309 and GFF5310 are separated by 73 nucleotidesGFF5310 and GFF5311 are separated by 166 nucleotides GFF5308 - Epoxide hydrolase (EC 3.3.2.9), at 184,231 to 185,145 GFF5308 GFF5309 - GTP-binding protein EngB, at 185,231 to 185,971 GFF5309 GFF5310 - Cytochrome c4, at 186,045 to 186,725 GFF5310 GFF5311 - Cytochrome c-type biogenesis protein Ccs1/ResB, at 186,892 to 189,012 GFF5311 Position (kb) 186 187Strain fitness (log2 ratio) -2 -1 0 1 2at 186.003 kb on - strandat 186.003 kb on - strandat 186.045 kb on - strandat 186.062 kb on + strandat 186.062 kb on + strandat 186.062 kb on + strandat 186.062 kb on + strandat 186.062 kb on + strandat 186.063 kb on - strandat 186.063 kb on - strandat 186.063 kb on - strandat 186.063 kb on - strandat 186.063 kb on - strandat 186.182 kb on + strand, within GFF5310at 186.182 kb on + strand, within GFF5310at 186.182 kb on + strand, within GFF5310at 186.182 kb on + strand, within GFF5310at 186.182 kb on + strand, within GFF5310at 186.182 kb on + strand, within GFF5310at 186.183 kb on - strand, within GFF5310at 186.294 kb on + strand, within GFF5310at 186.294 kb on + strand, within GFF5310at 186.294 kb on + strand, within GFF5310at 186.294 kb on + strand, within GFF5310at 186.294 kb on + strand, within GFF5310at 186.294 kb on + strand, within GFF5310at 186.294 kb on + strand, within GFF5310at 186.294 kb on + strand, within GFF5310at 186.294 kb on + strand, within GFF5310at 186.294 kb on + strand, within GFF5310at 186.294 kb on + strand, within GFF5310at 186.294 kb on + strand, within GFF5310at 186.294 kb on + strand, within GFF5310at 186.295 kb on - strand, within GFF5310at 186.295 kb on - strand, within GFF5310at 186.295 kb on - strand, within GFF5310at 186.295 kb on - strand, within GFF5310at 186.295 kb on - strand, within GFF5310at 186.295 kb on - strand, within GFF5310at 186.295 kb on - strand, within GFF5310at 186.295 kb on - strand, within GFF5310at 186.295 kb on - strand, within GFF5310at 186.474 kb on + strand, within GFF5310at 186.475 kb on - strand, within GFF5310at 186.556 kb on - strand, within GFF5310at 186.556 kb on - strand, within GFF5310at 186.585 kb on + strand, within GFF5310at 186.585 kb on + strand, within GFF5310at 186.585 kb on + strand, within GFF5310at 186.585 kb on + strand, within GFF5310at 186.585 kb on + strand, within GFF5310at 186.586 kb on - strand, within GFF5310at 186.586 kb on - strand, within GFF5310at 186.586 kb on - strand, within GFF5310at 186.586 kb on - strand, within GFF5310at 186.586 kb on - strand, within GFF5310at 186.586 kb on - strand, within GFF5310at 186.705 kb on + strandat 186.705 kb on + strandat 186.705 kb on + strandat 186.705 kb on + strandat 186.705 kb on + strandat 186.706 kb on - strandat 186.706 kb on - strandat 186.706 kb on - strandat 186.706 kb on - strandat 186.706 kb on - strandat 186.706 kb on - strandat 186.706 kb on - strandat 186.751 kb on + strandat 186.833 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1
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186,003 - -0.0
186,003 - +0.1
186,045 - -0.0
186,062 + +0.8
186,062 + -0.4
186,062 + -0.3
186,062 + +0.6
186,062 + -0.6
186,063 - +1.0
186,063 - -0.5
186,063 - +0.8
186,063 - -1.1
186,063 - -0.7
186,182 + GFF5310 0.20 -1.6
186,182 + GFF5310 0.20 -0.9
186,182 + GFF5310 0.20 -0.6
186,182 + GFF5310 0.20 -1.9
186,182 + GFF5310 0.20 -1.7
186,182 + GFF5310 0.20 +0.6
186,183 - GFF5310 0.20 -1.0
186,294 + GFF5310 0.37 +1.1
186,294 + GFF5310 0.37 -0.6
186,294 + GFF5310 0.37 -1.4
186,294 + GFF5310 0.37 -2.0
186,294 + GFF5310 0.37 -0.8
186,294 + GFF5310 0.37 -1.4
186,294 + GFF5310 0.37 -1.0
186,294 + GFF5310 0.37 -1.7
186,294 + GFF5310 0.37 +0.1
186,294 + GFF5310 0.37 -0.4
186,294 + GFF5310 0.37 -0.4
186,294 + GFF5310 0.37 -0.9
186,294 + GFF5310 0.37 +0.7
186,295 - GFF5310 0.37 -1.2
186,295 - GFF5310 0.37 -0.8
186,295 - GFF5310 0.37 -1.7
186,295 - GFF5310 0.37 +0.4
186,295 - GFF5310 0.37 -0.7
186,295 - GFF5310 0.37 -0.4
186,295 - GFF5310 0.37 -0.0
186,295 - GFF5310 0.37 +1.8
186,295 - GFF5310 0.37 -2.1
186,474 + GFF5310 0.63 -0.9
186,475 - GFF5310 0.63 -1.2
186,556 - GFF5310 0.75 -0.5
186,556 - GFF5310 0.75 -0.2
186,585 + GFF5310 0.79 -1.5
186,585 + GFF5310 0.79 -1.1
186,585 + GFF5310 0.79 -1.0
186,585 + GFF5310 0.79 -0.7
186,585 + GFF5310 0.79 +0.2
186,586 - GFF5310 0.79 -1.2
186,586 - GFF5310 0.79 +1.6
186,586 - GFF5310 0.79 -0.3
186,586 - GFF5310 0.79 -0.7
186,586 - GFF5310 0.79 -0.4
186,586 - GFF5310 0.79 -1.5
186,705 + +0.8
186,705 + -1.8
186,705 + -0.1
186,705 + -0.8
186,705 + -0.5
186,706 - -0.7
186,706 - -1.3
186,706 - -1.1
186,706 - -2.6
186,706 - -1.4
186,706 - -0.5
186,706 - +0.1
186,751 + -0.5
186,833 + -0.9

Or see this region's nucleotide sequence