Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5299 and GFF5300 are separated by 57 nucleotides GFF5300 and GFF5301 are separated by 17 nucleotides GFF5301 and GFF5302 are separated by 2 nucleotides
GFF5299 - TonB-dependent receptor, at 173,805 to 175,940
GFF5299
GFF5300 - ABC transporter, permease protein (cluster 10, nitrate/sulfonate/bicarbonate), at 175,998 to 176,873
GFF5300
GFF5301 - ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 176,891 to 177,709
GFF5301
GFF5302 - ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 177,712 to 178,752
GFF5302
Position (kb) 176
177
178 Strain fitness (log2 ratio) -2
-1
0
1
2 at 176.314 kb on + strand, within GFF5300 at 176.314 kb on + strand, within GFF5300 at 176.314 kb on + strand, within GFF5300 at 176.314 kb on + strand, within GFF5300 at 176.314 kb on + strand, within GFF5300 at 176.314 kb on + strand, within GFF5300 at 176.315 kb on - strand, within GFF5300 at 176.315 kb on - strand, within GFF5300 at 176.315 kb on - strand, within GFF5300 at 176.473 kb on + strand, within GFF5300 at 176.473 kb on + strand, within GFF5300 at 176.473 kb on + strand, within GFF5300 at 176.473 kb on + strand, within GFF5300 at 176.474 kb on - strand, within GFF5300 at 176.647 kb on + strand, within GFF5300 at 176.648 kb on - strand, within GFF5300 at 176.648 kb on - strand, within GFF5300 at 176.648 kb on - strand, within GFF5300 at 176.669 kb on - strand, within GFF5300 at 177.006 kb on + strand, within GFF5301 at 177.006 kb on + strand, within GFF5301 at 177.007 kb on - strand, within GFF5301 at 177.743 kb on + strand at 177.744 kb on - strand at 177.755 kb on + strand at 177.756 kb on - strand at 177.800 kb on + strand at 177.801 kb on - strand at 177.896 kb on + strand, within GFF5302 at 177.897 kb on - strand, within GFF5302 at 177.917 kb on + strand, within GFF5302 at 177.917 kb on + strand, within GFF5302 at 177.918 kb on - strand, within GFF5302 at 177.971 kb on + strand, within GFF5302 at 177.971 kb on + strand, within GFF5302 at 177.971 kb on + strand, within GFF5302 at 177.971 kb on + strand, within GFF5302 at 177.972 kb on - strand, within GFF5302 at 177.972 kb on - strand, within GFF5302 at 177.972 kb on - strand, within GFF5302 at 177.972 kb on - strand, within GFF5302 at 177.972 kb on - strand, within GFF5302 at 178.049 kb on + strand, within GFF5302 at 178.049 kb on + strand, within GFF5302 at 178.049 kb on + strand, within GFF5302 at 178.050 kb on - strand, within GFF5302 at 178.050 kb on - strand, within GFF5302 at 178.067 kb on + strand, within GFF5302 at 178.067 kb on + strand, within GFF5302 at 178.245 kb on - strand, within GFF5302 at 178.280 kb on + strand, within GFF5302 at 178.475 kb on + strand, within GFF5302 at 178.475 kb on + strand, within GFF5302 at 178.475 kb on + strand, within GFF5302 at 178.475 kb on + strand, within GFF5302 at 178.476 kb on - strand, within GFF5302 at 178.476 kb on - strand, within GFF5302 at 178.476 kb on - strand, within GFF5302 at 178.580 kb on + strand, within GFF5302 at 178.580 kb on + strand, within GFF5302 at 178.580 kb on + strand, within GFF5302 at 178.581 kb on - strand, within GFF5302 at 178.613 kb on + strand, within GFF5302 at 178.614 kb on - strand, within GFF5302
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 176,314 + GFF5300 0.36 +0.6 176,314 + GFF5300 0.36 -0.2 176,314 + GFF5300 0.36 +0.9 176,314 + GFF5300 0.36 -0.1 176,314 + GFF5300 0.36 +0.8 176,314 + GFF5300 0.36 -0.2 176,315 - GFF5300 0.36 -1.0 176,315 - GFF5300 0.36 -0.3 176,315 - GFF5300 0.36 -0.8 176,473 + GFF5300 0.54 -0.0 176,473 + GFF5300 0.54 -0.8 176,473 + GFF5300 0.54 -0.7 176,473 + GFF5300 0.54 +0.3 176,474 - GFF5300 0.54 +0.3 176,647 + GFF5300 0.74 +0.1 176,648 - GFF5300 0.74 +0.1 176,648 - GFF5300 0.74 +0.1 176,648 - GFF5300 0.74 -0.1 176,669 - GFF5300 0.77 -0.3 177,006 + GFF5301 0.14 +0.1 177,006 + GFF5301 0.14 +0.7 177,007 - GFF5301 0.14 +0.0 177,743 + -0.5 177,744 - -1.6 177,755 + -0.7 177,756 - +0.2 177,800 + -1.7 177,801 - -0.7 177,896 + GFF5302 0.18 -0.0 177,897 - GFF5302 0.18 -0.4 177,917 + GFF5302 0.20 +0.4 177,917 + GFF5302 0.20 -1.0 177,918 - GFF5302 0.20 +0.2 177,971 + GFF5302 0.25 -1.6 177,971 + GFF5302 0.25 -1.3 177,971 + GFF5302 0.25 -0.4 177,971 + GFF5302 0.25 +0.0 177,972 - GFF5302 0.25 +0.5 177,972 - GFF5302 0.25 -0.9 177,972 - GFF5302 0.25 -0.6 177,972 - GFF5302 0.25 +0.9 177,972 - GFF5302 0.25 +0.4 178,049 + GFF5302 0.32 -1.2 178,049 + GFF5302 0.32 +0.1 178,049 + GFF5302 0.32 -0.3 178,050 - GFF5302 0.32 +2.0 178,050 - GFF5302 0.32 -1.2 178,067 + GFF5302 0.34 +0.3 178,067 + GFF5302 0.34 -0.7 178,245 - GFF5302 0.51 -0.5 178,280 + GFF5302 0.55 -1.1 178,475 + GFF5302 0.73 +1.4 178,475 + GFF5302 0.73 -2.2 178,475 + GFF5302 0.73 -0.3 178,475 + GFF5302 0.73 -0.4 178,476 - GFF5302 0.73 +0.6 178,476 - GFF5302 0.73 +0.6 178,476 - GFF5302 0.73 -1.0 178,580 + GFF5302 0.83 -0.1 178,580 + GFF5302 0.83 -1.1 178,580 + GFF5302 0.83 -0.7 178,581 - GFF5302 0.83 +0.1 178,613 + GFF5302 0.87 -0.1 178,614 - GFF5302 0.87 -0.9
Or see this region's nucleotide sequence