Strain Fitness in Variovorax sp. SCN45 around GFF5295

Experiment: Community=Locust bean gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5294 and GFF5295 are separated by 179 nucleotidesGFF5295 and GFF5296 are separated by 33 nucleotides GFF5294 - Cardiolipin synthase (EC 2.7.8.-) phosphatidylethanolamine-utilizing, bacterial type ClsC, at 166,059 to 167,648 GFF5294 GFF5295 - Ferrichrome-iron receptor, at 167,828 to 169,948 GFF5295 GFF5296 - putative iron-regulated membrane protein, at 169,982 to 171,154 GFF5296 Position (kb) 167 168 169 170Strain fitness (log2 ratio) -2 -1 0 1 2at 166.951 kb on + strand, within GFF5294at 166.951 kb on + strand, within GFF5294at 166.952 kb on - strand, within GFF5294at 166.952 kb on - strand, within GFF5294at 166.952 kb on - strand, within GFF5294at 166.952 kb on - strand, within GFF5294at 167.263 kb on + strand, within GFF5294at 167.263 kb on + strand, within GFF5294at 167.263 kb on + strand, within GFF5294at 167.263 kb on + strand, within GFF5294at 167.263 kb on + strand, within GFF5294at 167.263 kb on + strand, within GFF5294at 167.264 kb on - strand, within GFF5294at 167.264 kb on - strand, within GFF5294at 167.264 kb on - strand, within GFF5294at 167.264 kb on - strand, within GFF5294at 167.264 kb on - strand, within GFF5294at 167.264 kb on - strand, within GFF5294at 167.362 kb on + strand, within GFF5294at 167.362 kb on + strand, within GFF5294at 167.362 kb on + strand, within GFF5294at 167.362 kb on + strand, within GFF5294at 167.362 kb on + strand, within GFF5294at 167.362 kb on + strand, within GFF5294at 167.362 kb on + strand, within GFF5294at 167.363 kb on - strand, within GFF5294at 167.363 kb on - strand, within GFF5294at 167.363 kb on - strand, within GFF5294at 167.363 kb on - strand, within GFF5294at 167.363 kb on - strand, within GFF5294at 167.363 kb on - strand, within GFF5294at 167.363 kb on - strand, within GFF5294at 167.691 kb on + strandat 167.888 kb on + strandat 167.888 kb on + strandat 167.888 kb on + strandat 167.888 kb on + strandat 167.889 kb on - strandat 167.889 kb on - strandat 167.889 kb on - strandat 167.889 kb on - strandat 167.889 kb on - strandat 167.923 kb on + strandat 167.923 kb on + strandat 167.924 kb on - strandat 167.924 kb on - strandat 167.924 kb on - strandat 168.128 kb on + strand, within GFF5295at 168.128 kb on + strand, within GFF5295at 168.128 kb on + strand, within GFF5295at 168.128 kb on + strand, within GFF5295at 168.128 kb on + strand, within GFF5295at 168.128 kb on + strand, within GFF5295at 168.129 kb on - strand, within GFF5295at 168.129 kb on - strand, within GFF5295at 168.129 kb on - strand, within GFF5295at 168.213 kb on - strand, within GFF5295at 168.213 kb on - strand, within GFF5295at 168.233 kb on + strand, within GFF5295at 168.233 kb on + strand, within GFF5295at 168.233 kb on + strand, within GFF5295at 168.233 kb on + strand, within GFF5295at 168.234 kb on - strand, within GFF5295at 168.234 kb on - strand, within GFF5295at 168.248 kb on + strand, within GFF5295at 168.249 kb on - strand, within GFF5295at 168.249 kb on - strand, within GFF5295at 168.249 kb on - strand, within GFF5295at 168.249 kb on - strand, within GFF5295at 168.249 kb on - strand, within GFF5295at 168.276 kb on - strand, within GFF5295at 168.479 kb on + strand, within GFF5295at 168.479 kb on + strand, within GFF5295at 168.480 kb on - strand, within GFF5295at 168.524 kb on + strand, within GFF5295at 168.524 kb on + strand, within GFF5295at 168.524 kb on + strand, within GFF5295at 168.524 kb on + strand, within GFF5295at 168.525 kb on - strand, within GFF5295at 168.525 kb on - strand, within GFF5295at 168.525 kb on - strand, within GFF5295at 168.525 kb on - strand, within GFF5295at 168.525 kb on - strand, within GFF5295at 168.529 kb on - strand, within GFF5295at 168.834 kb on - strand, within GFF5295at 168.834 kb on - strand, within GFF5295at 168.840 kb on - strand, within GFF5295at 168.908 kb on + strand, within GFF5295at 168.908 kb on + strand, within GFF5295at 169.055 kb on + strand, within GFF5295at 169.055 kb on + strand, within GFF5295at 169.056 kb on - strand, within GFF5295at 169.056 kb on - strand, within GFF5295at 169.073 kb on + strand, within GFF5295at 169.098 kb on - strand, within GFF5295at 169.157 kb on + strand, within GFF5295at 169.158 kb on - strand, within GFF5295at 169.158 kb on - strand, within GFF5295at 169.289 kb on + strand, within GFF5295at 169.289 kb on + strand, within GFF5295at 169.289 kb on + strand, within GFF5295at 169.289 kb on + strand, within GFF5295at 169.289 kb on + strand, within GFF5295at 169.289 kb on + strand, within GFF5295at 169.290 kb on - strand, within GFF5295at 169.290 kb on - strand, within GFF5295at 169.290 kb on - strand, within GFF5295at 169.290 kb on - strand, within GFF5295at 169.290 kb on - strand, within GFF5295at 169.316 kb on + strand, within GFF5295at 169.317 kb on - strand, within GFF5295at 169.325 kb on + strand, within GFF5295at 169.325 kb on + strand, within GFF5295at 169.325 kb on + strand, within GFF5295at 169.326 kb on - strand, within GFF5295at 169.326 kb on - strand, within GFF5295at 169.418 kb on + strand, within GFF5295at 169.418 kb on + strand, within GFF5295at 169.419 kb on - strand, within GFF5295at 169.511 kb on + strand, within GFF5295at 169.512 kb on - strand, within GFF5295at 169.601 kb on + strand, within GFF5295at 169.601 kb on + strand, within GFF5295at 169.601 kb on + strand, within GFF5295at 169.601 kb on + strand, within GFF5295at 169.602 kb on - strand, within GFF5295at 169.670 kb on + strand, within GFF5295at 169.671 kb on - strand, within GFF5295at 169.671 kb on - strand, within GFF5295at 169.724 kb on + strand, within GFF5295at 169.724 kb on + strand, within GFF5295at 169.829 kb on + strandat 169.865 kb on + strandat 169.866 kb on - strandat 169.866 kb on - strandat 169.937 kb on + strandat 169.937 kb on + strandat 169.938 kb on - strandat 170.366 kb on + strand, within GFF5296at 170.366 kb on + strand, within GFF5296at 170.366 kb on + strand, within GFF5296at 170.366 kb on + strand, within GFF5296at 170.366 kb on + strand, within GFF5296at 170.366 kb on + strand, within GFF5296at 170.366 kb on + strand, within GFF5296at 170.366 kb on + strand, within GFF5296at 170.366 kb on + strand, within GFF5296at 170.366 kb on + strand, within GFF5296at 170.366 kb on + strand, within GFF5296at 170.366 kb on + strand, within GFF5296at 170.366 kb on + strand, within GFF5296at 170.367 kb on - strand, within GFF5296at 170.367 kb on - strand, within GFF5296at 170.367 kb on - strand, within GFF5296at 170.367 kb on - strand, within GFF5296at 170.367 kb on - strand, within GFF5296at 170.367 kb on - strand, within GFF5296at 170.477 kb on + strand, within GFF5296at 170.646 kb on - strand, within GFF5296at 170.646 kb on - strand, within GFF5296at 170.646 kb on - strand, within GFF5296at 170.646 kb on - strand, within GFF5296at 170.654 kb on + strand, within GFF5296at 170.655 kb on - strand, within GFF5296at 170.655 kb on - strand, within GFF5296at 170.684 kb on + strand, within GFF5296at 170.685 kb on - strand, within GFF5296at 170.930 kb on + strand, within GFF5296at 170.931 kb on - strand, within GFF5296at 170.931 kb on - strand, within GFF5296

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1
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166,951 + GFF5294 0.56 -0.6
166,951 + GFF5294 0.56 -0.5
166,952 - GFF5294 0.56 -0.3
166,952 - GFF5294 0.56 -1.3
166,952 - GFF5294 0.56 -1.8
166,952 - GFF5294 0.56 -0.6
167,263 + GFF5294 0.76 -0.6
167,263 + GFF5294 0.76 -1.4
167,263 + GFF5294 0.76 -0.2
167,263 + GFF5294 0.76 +2.3
167,263 + GFF5294 0.76 -0.4
167,263 + GFF5294 0.76 -0.7
167,264 - GFF5294 0.76 -0.2
167,264 - GFF5294 0.76 +0.3
167,264 - GFF5294 0.76 +0.8
167,264 - GFF5294 0.76 +0.0
167,264 - GFF5294 0.76 -2.0
167,264 - GFF5294 0.76 -0.2
167,362 + GFF5294 0.82 -0.7
167,362 + GFF5294 0.82 -0.2
167,362 + GFF5294 0.82 -0.5
167,362 + GFF5294 0.82 -0.9
167,362 + GFF5294 0.82 -0.7
167,362 + GFF5294 0.82 +1.6
167,362 + GFF5294 0.82 +0.0
167,363 - GFF5294 0.82 -0.2
167,363 - GFF5294 0.82 -1.3
167,363 - GFF5294 0.82 -1.4
167,363 - GFF5294 0.82 +1.6
167,363 - GFF5294 0.82 +1.1
167,363 - GFF5294 0.82 -0.2
167,363 - GFF5294 0.82 -1.7
167,691 + +1.0
167,888 + -0.0
167,888 + +0.0
167,888 + -0.4
167,888 + -1.0
167,889 - +0.5
167,889 - -0.3
167,889 - -0.7
167,889 - -0.1
167,889 - +0.3
167,923 + +2.0
167,923 + -0.4
167,924 - -0.5
167,924 - +0.0
167,924 - +1.2
168,128 + GFF5295 0.14 -0.4
168,128 + GFF5295 0.14 -0.4
168,128 + GFF5295 0.14 -1.2
168,128 + GFF5295 0.14 +0.6
168,128 + GFF5295 0.14 -0.6
168,128 + GFF5295 0.14 -0.3
168,129 - GFF5295 0.14 +1.3
168,129 - GFF5295 0.14 -0.9
168,129 - GFF5295 0.14 +0.8
168,213 - GFF5295 0.18 +0.2
168,213 - GFF5295 0.18 +2.3
168,233 + GFF5295 0.19 +1.2
168,233 + GFF5295 0.19 -0.4
168,233 + GFF5295 0.19 -0.8
168,233 + GFF5295 0.19 -1.4
168,234 - GFF5295 0.19 -0.0
168,234 - GFF5295 0.19 +0.4
168,248 + GFF5295 0.20 -0.5
168,249 - GFF5295 0.20 +0.0
168,249 - GFF5295 0.20 -2.2
168,249 - GFF5295 0.20 +0.4
168,249 - GFF5295 0.20 +1.4
168,249 - GFF5295 0.20 -1.1
168,276 - GFF5295 0.21 +0.1
168,479 + GFF5295 0.31 -0.0
168,479 + GFF5295 0.31 -0.6
168,480 - GFF5295 0.31 -0.5
168,524 + GFF5295 0.33 +0.1
168,524 + GFF5295 0.33 +1.6
168,524 + GFF5295 0.33 +0.2
168,524 + GFF5295 0.33 -0.9
168,525 - GFF5295 0.33 -0.7
168,525 - GFF5295 0.33 +0.9
168,525 - GFF5295 0.33 -0.1
168,525 - GFF5295 0.33 +0.0
168,525 - GFF5295 0.33 -0.6
168,529 - GFF5295 0.33 -0.1
168,834 - GFF5295 0.47 -0.0
168,834 - GFF5295 0.47 -0.6
168,840 - GFF5295 0.48 +0.5
168,908 + GFF5295 0.51 +0.8
168,908 + GFF5295 0.51 +0.6
169,055 + GFF5295 0.58 -0.9
169,055 + GFF5295 0.58 -0.1
169,056 - GFF5295 0.58 +0.7
169,056 - GFF5295 0.58 +0.8
169,073 + GFF5295 0.59 +0.0
169,098 - GFF5295 0.60 -0.3
169,157 + GFF5295 0.63 -0.2
169,158 - GFF5295 0.63 +1.9
169,158 - GFF5295 0.63 -0.7
169,289 + GFF5295 0.69 +0.2
169,289 + GFF5295 0.69 +0.5
169,289 + GFF5295 0.69 -0.4
169,289 + GFF5295 0.69 -1.7
169,289 + GFF5295 0.69 -0.7
169,289 + GFF5295 0.69 +0.4
169,290 - GFF5295 0.69 +0.6
169,290 - GFF5295 0.69 -0.7
169,290 - GFF5295 0.69 -0.7
169,290 - GFF5295 0.69 -1.2
169,290 - GFF5295 0.69 +0.4
169,316 + GFF5295 0.70 -0.0
169,317 - GFF5295 0.70 -0.6
169,325 + GFF5295 0.71 -0.3
169,325 + GFF5295 0.71 -0.5
169,325 + GFF5295 0.71 -1.0
169,326 - GFF5295 0.71 -0.8
169,326 - GFF5295 0.71 +0.1
169,418 + GFF5295 0.75 -0.4
169,418 + GFF5295 0.75 -0.7
169,419 - GFF5295 0.75 +1.6
169,511 + GFF5295 0.79 +0.2
169,512 - GFF5295 0.79 -0.8
169,601 + GFF5295 0.84 -0.1
169,601 + GFF5295 0.84 -0.5
169,601 + GFF5295 0.84 -0.2
169,601 + GFF5295 0.84 +0.2
169,602 - GFF5295 0.84 -0.4
169,670 + GFF5295 0.87 -0.7
169,671 - GFF5295 0.87 -0.2
169,671 - GFF5295 0.87 -0.0
169,724 + GFF5295 0.89 +0.2
169,724 + GFF5295 0.89 -0.5
169,829 + -0.1
169,865 + -0.5
169,866 - +0.2
169,866 - -0.1
169,937 + -2.1
169,937 + +0.8
169,938 - -0.4
170,366 + GFF5296 0.33 -0.5
170,366 + GFF5296 0.33 -0.0
170,366 + GFF5296 0.33 -0.7
170,366 + GFF5296 0.33 -0.2
170,366 + GFF5296 0.33 -0.6
170,366 + GFF5296 0.33 -0.7
170,366 + GFF5296 0.33 +0.7
170,366 + GFF5296 0.33 -0.0
170,366 + GFF5296 0.33 +0.6
170,366 + GFF5296 0.33 +0.0
170,366 + GFF5296 0.33 -0.9
170,366 + GFF5296 0.33 -0.1
170,366 + GFF5296 0.33 -0.0
170,367 - GFF5296 0.33 +1.0
170,367 - GFF5296 0.33 +0.3
170,367 - GFF5296 0.33 +0.2
170,367 - GFF5296 0.33 -0.1
170,367 - GFF5296 0.33 -0.7
170,367 - GFF5296 0.33 -0.0
170,477 + GFF5296 0.42 +0.6
170,646 - GFF5296 0.57 +0.9
170,646 - GFF5296 0.57 +0.8
170,646 - GFF5296 0.57 -0.7
170,646 - GFF5296 0.57 -0.3
170,654 + GFF5296 0.57 -0.7
170,655 - GFF5296 0.57 -0.5
170,655 - GFF5296 0.57 -0.2
170,684 + GFF5296 0.60 -0.1
170,685 - GFF5296 0.60 -0.7
170,930 + GFF5296 0.81 -0.9
170,931 - GFF5296 0.81 +0.5
170,931 - GFF5296 0.81 -0.6

Or see this region's nucleotide sequence