Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5272 and GFF5273 are separated by 139 nucleotides GFF5273 and GFF5274 are separated by 13 nucleotides GFF5274 and GFF5275 are separated by 17 nucleotides
GFF5272 - Various polyols ABC transporter, substrate-binding protein, at 140,174 to 141,484
GFF5272
GFF5273 - Various polyols ABC transporter, permease protein 1, at 141,624 to 142,481
GFF5273
GFF5274 - Various polyols ABC transporter, permease protein 2, at 142,495 to 143,331
GFF5274
GFF5275 - Various polyols ABC transporter, ATP-binding protein, at 143,349 to 144,389
GFF5275
Position (kb) 141
142
143 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 140.702 kb on + strand, within GFF5272 at 140.702 kb on + strand, within GFF5272 at 140.703 kb on - strand, within GFF5272 at 140.847 kb on - strand, within GFF5272 at 140.849 kb on + strand, within GFF5272 at 140.850 kb on - strand, within GFF5272 at 140.850 kb on - strand, within GFF5272 at 141.149 kb on + strand, within GFF5272 at 141.149 kb on + strand, within GFF5272 at 141.149 kb on + strand, within GFF5272 at 141.149 kb on + strand, within GFF5272 at 141.149 kb on + strand, within GFF5272 at 141.149 kb on + strand, within GFF5272 at 141.149 kb on + strand, within GFF5272 at 141.149 kb on + strand, within GFF5272 at 141.150 kb on - strand, within GFF5272 at 141.150 kb on - strand, within GFF5272 at 141.150 kb on - strand, within GFF5272 at 141.150 kb on - strand, within GFF5272 at 141.150 kb on - strand, within GFF5272 at 141.215 kb on + strand, within GFF5272 at 141.215 kb on + strand, within GFF5272 at 141.215 kb on + strand, within GFF5272 at 141.215 kb on + strand, within GFF5272 at 141.216 kb on - strand, within GFF5272 at 141.216 kb on - strand, within GFF5272 at 141.216 kb on - strand, within GFF5272 at 141.317 kb on + strand, within GFF5272 at 141.317 kb on + strand, within GFF5272 at 141.318 kb on - strand, within GFF5272 at 141.473 kb on + strand at 141.476 kb on + strand at 141.476 kb on + strand at 141.477 kb on - strand at 141.477 kb on - strand at 141.477 kb on - strand at 141.482 kb on + strand at 141.482 kb on + strand at 141.482 kb on + strand at 141.483 kb on - strand at 141.483 kb on - strand at 141.483 kb on - strand at 141.483 kb on - strand at 141.711 kb on + strand, within GFF5273 at 141.712 kb on - strand, within GFF5273 at 141.729 kb on + strand, within GFF5273 at 141.729 kb on + strand, within GFF5273 at 141.729 kb on + strand, within GFF5273 at 141.730 kb on - strand, within GFF5273 at 141.730 kb on - strand, within GFF5273 at 141.730 kb on - strand, within GFF5273 at 141.730 kb on - strand, within GFF5273 at 141.730 kb on - strand, within GFF5273 at 141.783 kb on + strand, within GFF5273 at 141.783 kb on + strand, within GFF5273 at 141.784 kb on - strand, within GFF5273 at 142.005 kb on + strand, within GFF5273 at 142.005 kb on + strand, within GFF5273 at 142.006 kb on - strand, within GFF5273 at 142.006 kb on - strand, within GFF5273 at 142.215 kb on + strand, within GFF5273 at 142.215 kb on + strand, within GFF5273 at 142.350 kb on + strand, within GFF5273 at 142.350 kb on + strand, within GFF5273 at 142.350 kb on + strand, within GFF5273 at 142.350 kb on + strand, within GFF5273 at 142.350 kb on + strand, within GFF5273 at 142.350 kb on + strand, within GFF5273 at 142.350 kb on + strand, within GFF5273 at 142.350 kb on + strand, within GFF5273 at 142.350 kb on + strand, within GFF5273 at 142.351 kb on - strand, within GFF5273 at 142.351 kb on - strand, within GFF5273 at 142.351 kb on - strand, within GFF5273 at 142.351 kb on - strand, within GFF5273 at 142.351 kb on - strand, within GFF5273 at 142.351 kb on - strand, within GFF5273 at 142.351 kb on - strand, within GFF5273 at 142.351 kb on - strand, within GFF5273 at 142.351 kb on - strand, within GFF5273 at 142.351 kb on - strand, within GFF5273 at 142.702 kb on + strand, within GFF5274 at 142.711 kb on + strand, within GFF5274 at 142.711 kb on + strand, within GFF5274 at 142.712 kb on - strand, within GFF5274 at 142.784 kb on - strand, within GFF5274 at 142.882 kb on + strand, within GFF5274 at 142.882 kb on + strand, within GFF5274 at 142.882 kb on + strand, within GFF5274 at 142.882 kb on + strand, within GFF5274 at 142.978 kb on + strand, within GFF5274 at 142.978 kb on + strand, within GFF5274 at 142.978 kb on + strand, within GFF5274 at 142.979 kb on - strand, within GFF5274 at 142.979 kb on - strand, within GFF5274 at 142.987 kb on + strand, within GFF5274 at 142.987 kb on + strand, within GFF5274 at 142.988 kb on - strand, within GFF5274 at 142.988 kb on - strand, within GFF5274 at 143.198 kb on - strand, within GFF5274 at 143.198 kb on - strand, within GFF5274 at 143.198 kb on - strand, within GFF5274 at 143.297 kb on + strand at 143.297 kb on + strand at 143.297 kb on + strand at 143.297 kb on + strand at 143.297 kb on + strand at 143.298 kb on - strand at 143.355 kb on + strand at 143.355 kb on + strand at 143.355 kb on + strand at 143.356 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 140,702 + GFF5272 0.40 -1.0 140,702 + GFF5272 0.40 -0.9 140,703 - GFF5272 0.40 +0.8 140,847 - GFF5272 0.51 +0.1 140,849 + GFF5272 0.51 -0.4 140,850 - GFF5272 0.52 -0.6 140,850 - GFF5272 0.52 -0.0 141,149 + GFF5272 0.74 -0.3 141,149 + GFF5272 0.74 -1.6 141,149 + GFF5272 0.74 -1.7 141,149 + GFF5272 0.74 +1.8 141,149 + GFF5272 0.74 -0.1 141,149 + GFF5272 0.74 +0.4 141,149 + GFF5272 0.74 -0.9 141,149 + GFF5272 0.74 -0.0 141,150 - GFF5272 0.74 -0.7 141,150 - GFF5272 0.74 -1.1 141,150 - GFF5272 0.74 -0.0 141,150 - GFF5272 0.74 -0.4 141,150 - GFF5272 0.74 -0.4 141,215 + GFF5272 0.79 -1.6 141,215 + GFF5272 0.79 -2.8 141,215 + GFF5272 0.79 -0.5 141,215 + GFF5272 0.79 +0.7 141,216 - GFF5272 0.79 -0.4 141,216 - GFF5272 0.79 -0.2 141,216 - GFF5272 0.79 -0.7 141,317 + GFF5272 0.87 +0.6 141,317 + GFF5272 0.87 -0.7 141,318 - GFF5272 0.87 -0.4 141,473 + -0.3 141,476 + -1.5 141,476 + -0.1 141,477 - +0.4 141,477 - -0.3 141,477 - +1.6 141,482 + +1.6 141,482 + +1.2 141,482 + -0.5 141,483 - +0.1 141,483 - +0.6 141,483 - -0.4 141,483 - -0.7 141,711 + GFF5273 0.10 -0.7 141,712 - GFF5273 0.10 +0.2 141,729 + GFF5273 0.12 -0.4 141,729 + GFF5273 0.12 +1.0 141,729 + GFF5273 0.12 -0.6 141,730 - GFF5273 0.12 -0.5 141,730 - GFF5273 0.12 +0.4 141,730 - GFF5273 0.12 +1.0 141,730 - GFF5273 0.12 -0.1 141,730 - GFF5273 0.12 +1.8 141,783 + GFF5273 0.19 -0.0 141,783 + GFF5273 0.19 +0.8 141,784 - GFF5273 0.19 +0.3 142,005 + GFF5273 0.44 +0.4 142,005 + GFF5273 0.44 -1.0 142,006 - GFF5273 0.45 -0.4 142,006 - GFF5273 0.45 -0.7 142,215 + GFF5273 0.69 -0.4 142,215 + GFF5273 0.69 +0.7 142,350 + GFF5273 0.85 -0.7 142,350 + GFF5273 0.85 +0.9 142,350 + GFF5273 0.85 +0.3 142,350 + GFF5273 0.85 -1.0 142,350 + GFF5273 0.85 -0.7 142,350 + GFF5273 0.85 -1.3 142,350 + GFF5273 0.85 -0.5 142,350 + GFF5273 0.85 +3.4 142,350 + GFF5273 0.85 +1.4 142,351 - GFF5273 0.85 +1.2 142,351 - GFF5273 0.85 +0.3 142,351 - GFF5273 0.85 -0.1 142,351 - GFF5273 0.85 -0.6 142,351 - GFF5273 0.85 +0.3 142,351 - GFF5273 0.85 -0.4 142,351 - GFF5273 0.85 -0.4 142,351 - GFF5273 0.85 +0.1 142,351 - GFF5273 0.85 -0.5 142,351 - GFF5273 0.85 -0.2 142,702 + GFF5274 0.25 -0.5 142,711 + GFF5274 0.26 -0.4 142,711 + GFF5274 0.26 -0.2 142,712 - GFF5274 0.26 +0.5 142,784 - GFF5274 0.35 +0.7 142,882 + GFF5274 0.46 -0.7 142,882 + GFF5274 0.46 -0.4 142,882 + GFF5274 0.46 -1.8 142,882 + GFF5274 0.46 -0.0 142,978 + GFF5274 0.58 -1.1 142,978 + GFF5274 0.58 -1.2 142,978 + GFF5274 0.58 +0.3 142,979 - GFF5274 0.58 +0.1 142,979 - GFF5274 0.58 -1.2 142,987 + GFF5274 0.59 -0.2 142,987 + GFF5274 0.59 -0.7 142,988 - GFF5274 0.59 -0.5 142,988 - GFF5274 0.59 -0.9 143,198 - GFF5274 0.84 -0.5 143,198 - GFF5274 0.84 -0.5 143,198 - GFF5274 0.84 -1.0 143,297 + -0.4 143,297 + -0.6 143,297 + +1.0 143,297 + -0.3 143,297 + +0.1 143,298 - -0.3 143,355 + -0.9 143,355 + -0.9 143,355 + -1.3 143,356 - +0.3
Or see this region's nucleotide sequence