Strain Fitness in Variovorax sp. SCN45 around GFF5158

Experiment: Community=Locust bean gum; Passage=1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=1
10,479	+		GFF5157	0.46	-0.4
10,479	+		GFF5157	0.46	-0.1
10,479	+		GFF5157	0.46	+0.8
10,480	-		GFF5157	0.46	-0.2
10,480	-		GFF5157	0.46	-0.4
10,480	-		GFF5157	0.46	-1.9
10,480	-		GFF5157	0.46	+0.6
10,480	-		GFF5157	0.46	+1.6
10,539	+		GFF5157	0.49	+1.2
10,540	-		GFF5157	0.50	-0.0
10,540	-		GFF5157	0.50	+0.1
10,540	-		GFF5157	0.50	-0.8
10,540	-		GFF5157	0.50	-0.7
10,540	-		GFF5157	0.50	-1.2
10,540	-		GFF5157	0.50	-0.6
10,540	-		GFF5157	0.50	-1.7
10,614	+		GFF5157	0.54	-0.7
10,615	-		GFF5157	0.54	-0.3
10,620	+		GFF5157	0.54	-0.4
10,620	+		GFF5157	0.54	-0.4
10,620	+		GFF5157	0.54	-1.9
10,621	-		GFF5157	0.54	-0.5
10,621	-		GFF5157	0.54	-0.9
10,621	-		GFF5157	0.54	+0.6
10,698	+		GFF5157	0.58	-1.0
10,699	-		GFF5157	0.58	-2.1
10,699	-		GFF5157	0.58	+0.0
10,746	+		GFF5157	0.61	-0.3
10,747	-		GFF5157	0.61	-0.6
10,747	-		GFF5157	0.61	-0.7
10,747	-		GFF5157	0.61	-0.7
10,789	-		GFF5157	0.63	-0.4
10,872	+		GFF5157	0.67	-0.4
10,872	+		GFF5157	0.67	-0.1
10,872	+		GFF5157	0.67	-0.5
10,872	+		GFF5157	0.67	-0.6
10,872	+		GFF5157	0.67	-0.8
10,873	-		GFF5157	0.67	-1.0
10,873	-		GFF5157	0.67	+0.3
10,873	-		GFF5157	0.67	-0.2
10,873	-		GFF5157	0.67	-0.7
10,873	-		GFF5157	0.67	-0.7
10,873	-		GFF5157	0.67	-0.3
10,873	-		GFF5157	0.67	-0.2
10,962	+		GFF5157	0.72	+0.2
10,962	+		GFF5157	0.72	-2.4
10,963	-		GFF5157	0.72	-1.4
10,963	-		GFF5157	0.72	-0.4
10,963	-		GFF5157	0.72	+0.1
10,963	-		GFF5157	0.72	-0.8
11,115	+		GFF5157	0.80	+1.6
11,115	+		GFF5157	0.80	-0.7
11,115	+		GFF5157	0.80	-0.3
11,116	-		GFF5157	0.80	+3.2
11,116	-		GFF5157	0.80	+0.4
11,116	-		GFF5157	0.80	-1.6
11,202	+		GFF5157	0.85	-0.8
11,202	+		GFF5157	0.85	+0.2
11,202	+		GFF5157	0.85	-0.7
11,202	+		GFF5157	0.85	-0.7
11,202	+		GFF5157	0.85	-0.5
11,202	+		GFF5157	0.85	-0.0
11,202	+		GFF5157	0.85	-0.8
11,202	+		GFF5157	0.85	-0.8
11,203	-		GFF5157	0.85	-0.0
11,203	-		GFF5157	0.85	-1.0
11,203	-		GFF5157	0.85	-1.0
11,203	-		GFF5157	0.85	-1.0
11,203	-		GFF5157	0.85	+1.0
11,355	+				-0.0
11,355	+				+0.0
11,355	+				+0.1
11,355	+				-0.2
11,355	+				-2.0
11,356	-				-1.6
11,356	-				-0.6
11,567	+		GFF5158	0.11	+0.6
11,567	+		GFF5158	0.11	-1.6
11,567	+		GFF5158	0.11	-0.0
11,568	-		GFF5158	0.11	-2.7
11,568	-		GFF5158	0.11	-2.6
12,201	+		GFF5158	0.88	-0.2
12,201	+		GFF5158	0.88	-3.4
12,202	-		GFF5158	0.88	-0.6
12,202	-		GFF5158	0.88	-1.7
12,202	-		GFF5158	0.88	-1.6
12,202	-		GFF5158	0.88	-2.4
12,292	+				-0.5
12,292	+				+0.6
12,292	+				-1.2
12,292	+				-0.3
12,292	+				-1.6
12,292	+				+0.3
12,293	-				-0.0