Strain Fitness in Variovorax sp. SCN45 around GFF4934

Experiment: Community=Locust bean gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4932 and GFF4933 overlap by 11 nucleotidesGFF4933 and GFF4934 overlap by 8 nucleotidesGFF4934 and GFF4935 overlap by 4 nucleotides GFF4932 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 25,918 to 26,727 GFF4932 GFF4933 - Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2), at 26,717 to 27,565 GFF4933 GFF4934 - ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines), at 27,558 to 28,454 GFF4934 GFF4935 - ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines), at 28,451 to 29,473 GFF4935 Position (kb) 27 28 29Strain fitness (log2 ratio) -2 -1 0 1 2at 26.657 kb on + strandat 26.657 kb on + strandat 26.657 kb on + strandat 26.657 kb on + strandat 26.826 kb on + strand, within GFF4933at 26.826 kb on + strand, within GFF4933at 26.827 kb on - strand, within GFF4933at 26.827 kb on - strand, within GFF4933at 26.887 kb on - strand, within GFF4933at 27.121 kb on - strand, within GFF4933at 27.121 kb on - strand, within GFF4933at 27.361 kb on - strand, within GFF4933at 27.528 kb on + strandat 27.579 kb on + strandat 27.579 kb on + strandat 27.579 kb on + strandat 27.580 kb on - strandat 27.580 kb on - strandat 27.580 kb on - strandat 27.676 kb on + strand, within GFF4934at 27.676 kb on + strand, within GFF4934at 27.676 kb on + strand, within GFF4934at 27.676 kb on + strand, within GFF4934at 27.676 kb on + strand, within GFF4934at 27.676 kb on + strand, within GFF4934at 27.676 kb on + strand, within GFF4934at 27.676 kb on + strand, within GFF4934at 27.676 kb on + strand, within GFF4934at 27.676 kb on + strand, within GFF4934at 27.677 kb on - strand, within GFF4934at 27.677 kb on - strand, within GFF4934at 27.677 kb on - strand, within GFF4934at 28.084 kb on + strand, within GFF4934at 28.085 kb on - strand, within GFF4934at 28.171 kb on + strand, within GFF4934at 28.172 kb on - strand, within GFF4934at 28.587 kb on + strand, within GFF4935at 28.588 kb on - strand, within GFF4935at 28.588 kb on - strand, within GFF4935at 28.588 kb on - strand, within GFF4935at 28.588 kb on - strand, within GFF4935at 28.588 kb on - strand, within GFF4935at 28.588 kb on - strand, within GFF4935at 28.588 kb on - strand, within GFF4935at 28.588 kb on - strand, within GFF4935at 28.588 kb on - strand, within GFF4935at 28.653 kb on + strand, within GFF4935at 28.653 kb on + strand, within GFF4935at 28.653 kb on + strand, within GFF4935at 28.654 kb on - strand, within GFF4935at 28.758 kb on + strand, within GFF4935at 28.758 kb on + strand, within GFF4935at 28.758 kb on + strand, within GFF4935at 28.759 kb on - strand, within GFF4935at 28.759 kb on - strand, within GFF4935at 28.759 kb on - strand, within GFF4935at 28.759 kb on - strand, within GFF4935at 28.759 kb on - strand, within GFF4935at 28.759 kb on - strand, within GFF4935at 28.759 kb on - strand, within GFF4935at 28.759 kb on - strand, within GFF4935at 28.759 kb on - strand, within GFF4935at 28.809 kb on + strand, within GFF4935at 28.809 kb on + strand, within GFF4935at 28.809 kb on + strand, within GFF4935at 28.809 kb on + strand, within GFF4935at 28.809 kb on + strand, within GFF4935at 28.810 kb on - strand, within GFF4935at 28.810 kb on - strand, within GFF4935at 28.810 kb on - strand, within GFF4935at 28.810 kb on - strand, within GFF4935at 28.825 kb on - strand, within GFF4935at 28.825 kb on - strand, within GFF4935at 28.825 kb on - strand, within GFF4935at 28.825 kb on - strand, within GFF4935at 28.825 kb on - strand, within GFF4935at 28.938 kb on + strand, within GFF4935at 28.938 kb on + strand, within GFF4935at 28.944 kb on + strand, within GFF4935at 28.944 kb on + strand, within GFF4935at 28.944 kb on + strand, within GFF4935at 28.944 kb on + strand, within GFF4935at 28.944 kb on + strand, within GFF4935at 28.944 kb on + strand, within GFF4935at 28.944 kb on + strand, within GFF4935at 28.944 kb on + strand, within GFF4935at 28.945 kb on - strand, within GFF4935at 28.945 kb on - strand, within GFF4935at 28.945 kb on - strand, within GFF4935at 28.945 kb on - strand, within GFF4935at 28.945 kb on - strand, within GFF4935at 28.945 kb on - strand, within GFF4935at 28.992 kb on + strand, within GFF4935at 28.993 kb on - strand, within GFF4935at 28.993 kb on - strand, within GFF4935at 28.993 kb on - strand, within GFF4935at 28.993 kb on - strand, within GFF4935at 28.993 kb on - strand, within GFF4935at 29.041 kb on - strand, within GFF4935at 29.178 kb on + strand, within GFF4935at 29.256 kb on + strand, within GFF4935at 29.257 kb on - strand, within GFF4935at 29.316 kb on + strand, within GFF4935

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1
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26,657 + -0.5
26,657 + +0.8
26,657 + +0.1
26,657 + -0.4
26,826 + GFF4933 0.13 -0.2
26,826 + GFF4933 0.13 +0.1
26,827 - GFF4933 0.13 +0.6
26,827 - GFF4933 0.13 +1.4
26,887 - GFF4933 0.20 +1.2
27,121 - GFF4933 0.48 +0.8
27,121 - GFF4933 0.48 -0.1
27,361 - GFF4933 0.76 -0.7
27,528 + -0.0
27,579 + +0.2
27,579 + +1.3
27,579 + -0.1
27,580 - -0.0
27,580 - +1.2
27,580 - -1.4
27,676 + GFF4934 0.13 +0.8
27,676 + GFF4934 0.13 +0.3
27,676 + GFF4934 0.13 -0.1
27,676 + GFF4934 0.13 -0.9
27,676 + GFF4934 0.13 +0.3
27,676 + GFF4934 0.13 +0.6
27,676 + GFF4934 0.13 +0.7
27,676 + GFF4934 0.13 -0.1
27,676 + GFF4934 0.13 +1.1
27,676 + GFF4934 0.13 -0.2
27,677 - GFF4934 0.13 -0.9
27,677 - GFF4934 0.13 -1.2
27,677 - GFF4934 0.13 +1.1
28,084 + GFF4934 0.59 -0.7
28,085 - GFF4934 0.59 +0.1
28,171 + GFF4934 0.68 -0.2
28,172 - GFF4934 0.68 +0.3
28,587 + GFF4935 0.13 -0.5
28,588 - GFF4935 0.13 -0.2
28,588 - GFF4935 0.13 +0.8
28,588 - GFF4935 0.13 -0.3
28,588 - GFF4935 0.13 +0.2
28,588 - GFF4935 0.13 -0.9
28,588 - GFF4935 0.13 -0.9
28,588 - GFF4935 0.13 +0.8
28,588 - GFF4935 0.13 +0.6
28,588 - GFF4935 0.13 -0.4
28,653 + GFF4935 0.20 -1.1
28,653 + GFF4935 0.20 +0.6
28,653 + GFF4935 0.20 +2.4
28,654 - GFF4935 0.20 +1.1
28,758 + GFF4935 0.30 -0.0
28,758 + GFF4935 0.30 +0.3
28,758 + GFF4935 0.30 -0.5
28,759 - GFF4935 0.30 +0.1
28,759 - GFF4935 0.30 -0.4
28,759 - GFF4935 0.30 -0.2
28,759 - GFF4935 0.30 -0.3
28,759 - GFF4935 0.30 -0.5
28,759 - GFF4935 0.30 -0.1
28,759 - GFF4935 0.30 -1.8
28,759 - GFF4935 0.30 -1.5
28,759 - GFF4935 0.30 +0.2
28,809 + GFF4935 0.35 -0.2
28,809 + GFF4935 0.35 +0.6
28,809 + GFF4935 0.35 +0.8
28,809 + GFF4935 0.35 +2.4
28,809 + GFF4935 0.35 -0.1
28,810 - GFF4935 0.35 +1.4
28,810 - GFF4935 0.35 -0.5
28,810 - GFF4935 0.35 +0.0
28,810 - GFF4935 0.35 +0.6
28,825 - GFF4935 0.37 -0.3
28,825 - GFF4935 0.37 -0.1
28,825 - GFF4935 0.37 -0.6
28,825 - GFF4935 0.37 +0.8
28,825 - GFF4935 0.37 -0.5
28,938 + GFF4935 0.48 -0.5
28,938 + GFF4935 0.48 +0.3
28,944 + GFF4935 0.48 -1.1
28,944 + GFF4935 0.48 -1.8
28,944 + GFF4935 0.48 +0.2
28,944 + GFF4935 0.48 +0.3
28,944 + GFF4935 0.48 -0.5
28,944 + GFF4935 0.48 -0.3
28,944 + GFF4935 0.48 -0.2
28,944 + GFF4935 0.48 -0.2
28,945 - GFF4935 0.48 -0.4
28,945 - GFF4935 0.48 -1.2
28,945 - GFF4935 0.48 +0.2
28,945 - GFF4935 0.48 +0.2
28,945 - GFF4935 0.48 +1.0
28,945 - GFF4935 0.48 -0.4
28,992 + GFF4935 0.53 +0.4
28,993 - GFF4935 0.53 +0.3
28,993 - GFF4935 0.53 +0.4
28,993 - GFF4935 0.53 -0.5
28,993 - GFF4935 0.53 -0.0
28,993 - GFF4935 0.53 -0.9
29,041 - GFF4935 0.58 -0.9
29,178 + GFF4935 0.71 +0.6
29,256 + GFF4935 0.79 -0.8
29,257 - GFF4935 0.79 -0.1
29,316 + GFF4935 0.85 -1.5

Or see this region's nucleotide sequence